Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trpI and SO0530 are separated by 99 nucleotides SO0530 and arsR are separated by 491 nucleotides arsR and SO0533 are separated by 35 nucleotides
SO0529: trpI - trpba operon transcriptional activator (NCBI ptt file), at 551,820 to 552,704
trpI
SO0530: SO0530 - transporter, LysE family (NCBI ptt file), at 552,804 to 553,415
SO0530
SO0532: arsR - arsenical resistence operon repressor (NCBI ptt file), at 553,907 to 554,251
arsR
SO0533: SO0533 - arsenate reductase, putative (NCBI ptt file), at 554,287 to 554,802
SO0533
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 551.845 kb on + strand at 551.853 kb on - strand at 551.862 kb on + strand at 551.873 kb on + strand at 551.873 kb on + strand at 551.926 kb on + strand, within trpI at 552.110 kb on - strand, within trpI at 552.151 kb on - strand, within trpI at 552.151 kb on - strand, within trpI at 552.243 kb on - strand, within trpI at 552.251 kb on - strand, within trpI at 552.329 kb on - strand, within trpI at 552.350 kb on + strand, within trpI at 552.351 kb on + strand, within trpI at 552.389 kb on + strand, within trpI at 552.397 kb on - strand, within trpI at 552.397 kb on - strand, within trpI at 552.410 kb on + strand, within trpI at 552.410 kb on + strand, within trpI at 552.436 kb on - strand, within trpI at 552.461 kb on + strand, within trpI at 552.469 kb on - strand, within trpI at 552.469 kb on - strand, within trpI at 552.482 kb on - strand, within trpI at 552.483 kb on + strand, within trpI at 552.491 kb on - strand, within trpI at 552.497 kb on - strand, within trpI at 552.801 kb on + strand at 552.801 kb on + strand at 552.853 kb on - strand at 552.934 kb on + strand, within SO0530 at 553.062 kb on + strand, within SO0530 at 553.158 kb on + strand, within SO0530 at 553.205 kb on + strand, within SO0530 at 553.301 kb on - strand, within SO0530 at 553.356 kb on + strand at 553.361 kb on + strand at 553.361 kb on + strand at 553.361 kb on + strand at 553.361 kb on + strand at 553.364 kb on - strand at 553.369 kb on - strand at 553.369 kb on - strand at 553.374 kb on - strand at 553.537 kb on + strand at 553.545 kb on + strand at 553.545 kb on - strand at 553.595 kb on - strand at 553.599 kb on + strand at 553.602 kb on - strand at 553.615 kb on + strand at 553.616 kb on - strand at 553.663 kb on + strand at 553.684 kb on - strand at 553.694 kb on + strand at 553.719 kb on + strand at 553.727 kb on - strand at 553.774 kb on + strand at 553.959 kb on + strand, within arsR at 554.125 kb on + strand, within arsR at 554.125 kb on + strand, within arsR at 554.133 kb on - strand, within arsR at 554.133 kb on - strand, within arsR at 554.277 kb on + strand at 554.280 kb on - strand at 554.386 kb on - strand, within SO0533 at 554.407 kb on + strand, within SO0533
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 551,845 + -0.6 551,853 - +0.4 551,862 + -0.6 551,873 + -0.5 551,873 + -1.3 551,926 + trpI SO0529 0.12 -0.7 552,110 - trpI SO0529 0.33 -1.4 552,151 - trpI SO0529 0.37 +0.1 552,151 - trpI SO0529 0.37 +0.1 552,243 - trpI SO0529 0.48 +0.9 552,251 - trpI SO0529 0.49 +2.1 552,329 - trpI SO0529 0.58 -0.8 552,350 + trpI SO0529 0.60 +0.6 552,351 + trpI SO0529 0.60 -1.1 552,389 + trpI SO0529 0.64 -0.0 552,397 - trpI SO0529 0.65 +2.3 552,397 - trpI SO0529 0.65 -1.4 552,410 + trpI SO0529 0.67 +0.2 552,410 + trpI SO0529 0.67 +1.1 552,436 - trpI SO0529 0.70 -1.7 552,461 + trpI SO0529 0.72 +0.3 552,469 - trpI SO0529 0.73 -1.8 552,469 - trpI SO0529 0.73 -1.1 552,482 - trpI SO0529 0.75 -1.6 552,483 + trpI SO0529 0.75 -2.7 552,491 - trpI SO0529 0.76 -0.9 552,497 - trpI SO0529 0.76 -1.4 552,801 + +0.6 552,801 + -1.8 552,853 - +0.3 552,934 + SO0530 0.21 -0.7 553,062 + SO0530 0.42 -0.9 553,158 + SO0530 0.58 -0.7 553,205 + SO0530 0.66 +0.5 553,301 - SO0530 0.81 +0.8 553,356 + +1.1 553,361 + -0.8 553,361 + -0.2 553,361 + -0.7 553,361 + -1.7 553,364 - -1.5 553,369 - +0.7 553,369 - +0.7 553,374 - +0.2 553,537 + -1.6 553,545 + -1.5 553,545 - -0.3 553,595 - +0.6 553,599 + +0.9 553,602 - -1.1 553,615 + +0.4 553,616 - +0.1 553,663 + +3.1 553,684 - -1.1 553,694 + +0.6 553,719 + -0.8 553,727 - +0.8 553,774 + -0.7 553,959 + arsR SO0532 0.15 -2.1 554,125 + arsR SO0532 0.63 -1.1 554,125 + arsR SO0532 0.63 +0.8 554,133 - arsR SO0532 0.66 +0.5 554,133 - arsR SO0532 0.66 -0.5 554,277 + +0.9 554,280 - +2.1 554,386 - SO0533 0.19 +1.4 554,407 + SO0533 0.23 -0.5
Or see this region's nucleotide sequence