Experiment: M5 outer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0346 and SO0347 are separated by 502 nucleotides SO0347 and SO0348 are separated by 40 nucleotides
SO0346: SO0346 - transcriptional regulator. GntR family (NCBI ptt file), at 352,532 to 353,248
SO0346
SO0347: SO0347 - acyltransferase family protein (NCBI ptt file), at 353,751 to 354,659
SO0347
SO0348: SO0348 - acyltransferase family protein (NCBI ptt file), at 354,700 to 355,602
SO0348
Position (kb) 353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 352.810 kb on - strand, within SO0346 at 352.870 kb on + strand, within SO0346 at 352.964 kb on - strand, within SO0346 at 352.968 kb on + strand, within SO0346 at 353.059 kb on + strand, within SO0346 at 353.165 kb on - strand, within SO0346 at 353.197 kb on - strand at 353.198 kb on + strand at 353.240 kb on - strand at 353.260 kb on - strand at 353.283 kb on - strand at 353.334 kb on - strand at 353.529 kb on + strand at 353.718 kb on + strand at 353.719 kb on - strand at 353.910 kb on + strand, within SO0347 at 354.004 kb on - strand, within SO0347 at 354.076 kb on + strand, within SO0347 at 354.084 kb on - strand, within SO0347 at 354.084 kb on - strand, within SO0347 at 354.084 kb on - strand, within SO0347 at 354.152 kb on - strand, within SO0347 at 354.218 kb on - strand, within SO0347 at 354.282 kb on + strand, within SO0347 at 354.290 kb on - strand, within SO0347 at 354.290 kb on - strand, within SO0347 at 354.373 kb on + strand, within SO0347 at 354.381 kb on - strand, within SO0347 at 354.429 kb on - strand, within SO0347 at 354.527 kb on - strand, within SO0347 at 354.537 kb on + strand, within SO0347 at 354.545 kb on - strand, within SO0347 at 354.545 kb on - strand, within SO0347 at 354.613 kb on + strand at 354.631 kb on - strand at 354.644 kb on + strand at 354.646 kb on + strand at 354.653 kb on - strand at 354.673 kb on - strand at 354.769 kb on + strand at 354.868 kb on - strand, within SO0348 at 354.868 kb on - strand, within SO0348 at 354.868 kb on - strand, within SO0348 at 355.045 kb on - strand, within SO0348 at 355.082 kb on + strand, within SO0348 at 355.102 kb on - strand, within SO0348 at 355.102 kb on - strand, within SO0348 at 355.109 kb on - strand, within SO0348 at 355.219 kb on + strand, within SO0348 at 355.313 kb on + strand, within SO0348 at 355.313 kb on + strand, within SO0348 at 355.321 kb on - strand, within SO0348 at 355.321 kb on - strand, within SO0348 at 355.338 kb on + strand, within SO0348 at 355.346 kb on - strand, within SO0348 at 355.360 kb on + strand, within SO0348 at 355.370 kb on + strand, within SO0348 at 355.394 kb on + strand, within SO0348 at 355.394 kb on + strand, within SO0348 at 355.414 kb on - strand, within SO0348 at 355.424 kb on - strand, within SO0348 at 355.529 kb on + strand at 355.529 kb on + strand at 355.529 kb on + strand at 355.529 kb on + strand at 355.532 kb on - strand at 355.537 kb on - strand at 355.537 kb on - strand at 355.632 kb on + strand at 355.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M5 outer remove 352,810 - SO0346 0.39 +0.7 352,870 + SO0346 0.47 -1.1 352,964 - SO0346 0.60 +1.1 352,968 + SO0346 0.61 -0.5 353,059 + SO0346 0.74 -2.3 353,165 - SO0346 0.88 -2.0 353,197 - +0.9 353,198 + -0.3 353,240 - +0.8 353,260 - -0.0 353,283 - +1.5 353,334 - +1.2 353,529 + -0.4 353,718 + -0.7 353,719 - -2.8 353,910 + SO0347 0.17 -1.0 354,004 - SO0347 0.28 -0.2 354,076 + SO0347 0.36 -0.4 354,084 - SO0347 0.37 +0.2 354,084 - SO0347 0.37 +0.4 354,084 - SO0347 0.37 +0.4 354,152 - SO0347 0.44 -0.5 354,218 - SO0347 0.51 -0.0 354,282 + SO0347 0.58 +2.2 354,290 - SO0347 0.59 -1.6 354,290 - SO0347 0.59 -0.1 354,373 + SO0347 0.68 -1.8 354,381 - SO0347 0.69 -1.9 354,429 - SO0347 0.75 -1.4 354,527 - SO0347 0.85 +1.1 354,537 + SO0347 0.86 -1.6 354,545 - SO0347 0.87 -2.2 354,545 - SO0347 0.87 -0.8 354,613 + +0.5 354,631 - -0.6 354,644 + -1.2 354,646 + -0.9 354,653 - -1.0 354,673 - -0.8 354,769 + +2.4 354,868 - SO0348 0.19 -0.7 354,868 - SO0348 0.19 -0.1 354,868 - SO0348 0.19 -1.6 355,045 - SO0348 0.38 -1.7 355,082 + SO0348 0.42 -0.9 355,102 - SO0348 0.45 -1.4 355,102 - SO0348 0.45 -1.7 355,109 - SO0348 0.45 +0.6 355,219 + SO0348 0.57 -1.3 355,313 + SO0348 0.68 +0.2 355,313 + SO0348 0.68 -1.0 355,321 - SO0348 0.69 +0.4 355,321 - SO0348 0.69 -2.0 355,338 + SO0348 0.71 -1.1 355,346 - SO0348 0.72 -2.9 355,360 + SO0348 0.73 -1.4 355,370 + SO0348 0.74 -0.3 355,394 + SO0348 0.77 -1.4 355,394 + SO0348 0.77 +1.2 355,414 - SO0348 0.79 -1.4 355,424 - SO0348 0.80 -1.1 355,529 + -0.5 355,529 + -0.7 355,529 + +1.2 355,529 + -1.4 355,532 - +0.8 355,537 - -1.7 355,537 - -0.8 355,632 + -1.7 355,640 - -0.5
Or see this region's nucleotide sequence