Strain Fitness in Shewanella oneidensis MR-1 around SO0326

Experiment: M5 outer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0324 and SO0325 are separated by 104 nucleotidesSO0325 and SO0326 are separated by 251 nucleotidesSO0326 and SO0329 are separated by 329 nucleotidesSO0329 and SO0330 are separated by 21 nucleotides SO0324: SO0324 - conserved hypothetical protein (NCBI ptt file), at 330,108 to 330,509 SO0324 SO0325: SO0325 - dsrE-related protein (NCBI ptt file), at 330,614 to 330,973 SO0325 SO0326: SO0326 - hypothetical protein (NCBI ptt file), at 331,225 to 332,148 SO0326 SO0329: SO0329 - hypothetical protein (NCBI ptt file), at 332,478 to 332,699 SO0329 SO0330: SO0330 - conserved hypothetical protein (NCBI ptt file), at 332,721 to 334,175 SO0330 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 330.237 kb on + strand, within SO0324at 330.302 kb on - strand, within SO0324at 330.393 kb on + strand, within SO0324at 330.452 kb on + strand, within SO0324at 330.487 kb on - strandat 330.492 kb on - strandat 330.524 kb on - strandat 330.556 kb on + strandat 330.556 kb on + strandat 330.556 kb on + strandat 330.643 kb on - strandat 330.652 kb on + strand, within SO0325at 330.694 kb on + strand, within SO0325at 330.694 kb on + strand, within SO0325at 330.707 kb on + strand, within SO0325at 330.712 kb on - strand, within SO0325at 330.900 kb on - strand, within SO0325at 330.912 kb on + strand, within SO0325at 330.947 kb on - strandat 331.155 kb on - strandat 331.196 kb on - strandat 331.287 kb on + strandat 331.355 kb on - strand, within SO0326at 331.356 kb on - strand, within SO0326at 331.371 kb on + strand, within SO0326at 331.384 kb on - strand, within SO0326at 331.415 kb on + strand, within SO0326at 331.451 kb on + strand, within SO0326at 331.451 kb on + strand, within SO0326at 331.459 kb on - strand, within SO0326at 331.472 kb on + strand, within SO0326at 331.473 kb on + strand, within SO0326at 331.644 kb on + strand, within SO0326at 331.751 kb on - strand, within SO0326at 331.777 kb on - strand, within SO0326at 331.777 kb on - strand, within SO0326at 331.835 kb on - strand, within SO0326at 331.839 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.893 kb on + strand, within SO0326at 331.976 kb on - strand, within SO0326at 332.021 kb on + strand, within SO0326at 332.192 kb on + strandat 332.210 kb on - strandat 332.219 kb on - strandat 332.219 kb on - strandat 332.260 kb on + strandat 332.260 kb on + strandat 332.260 kb on + strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.292 kb on - strandat 332.311 kb on - strandat 332.352 kb on - strandat 332.375 kb on + strandat 332.383 kb on - strandat 332.383 kb on - strandat 332.383 kb on - strandat 332.404 kb on - strandat 332.418 kb on + strandat 332.421 kb on - strandat 332.426 kb on - strandat 332.426 kb on - strandat 332.477 kb on - strandat 332.477 kb on - strandat 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.540 kb on + strand, within SO0329at 332.540 kb on - strand, within SO0329at 332.553 kb on + strand, within SO0329at 332.562 kb on - strand, within SO0329at 332.568 kb on + strand, within SO0329at 332.618 kb on - strand, within SO0329at 332.634 kb on - strand, within SO0329at 332.665 kb on + strand, within SO0329at 332.673 kb on - strand, within SO0329at 332.677 kb on + strandat 332.702 kb on - strandat 332.734 kb on - strandat 332.916 kb on - strand, within SO0330at 332.916 kb on - strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.950 kb on - strand, within SO0330at 332.982 kb on - strand, within SO0330at 332.999 kb on + strand, within SO0330at 332.999 kb on + strand, within SO0330at 333.007 kb on - strand, within SO0330at 333.031 kb on - strand, within SO0330at 333.090 kb on - strand, within SO0330at 333.122 kb on + strand, within SO0330at 333.142 kb on + strand, within SO0330

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Per-strain Table

Position Strand Gene LocusTag Fraction M5 outer
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330,237 + SO0324 0.32 -0.2
330,302 - SO0324 0.48 -0.5
330,393 + SO0324 0.71 +0.8
330,452 + SO0324 0.86 +1.2
330,487 - +0.8
330,492 - -0.1
330,524 - -1.4
330,556 + +1.1
330,556 + -1.3
330,556 + -0.1
330,643 - -2.2
330,652 + SO0325 0.11 +1.2
330,694 + SO0325 0.22 -1.0
330,694 + SO0325 0.22 +1.0
330,707 + SO0325 0.26 -0.3
330,712 - SO0325 0.27 -1.3
330,900 - SO0325 0.79 -0.0
330,912 + SO0325 0.83 -0.6
330,947 - -0.6
331,155 - +1.6
331,196 - +0.6
331,287 + +0.9
331,355 - SO0326 0.14 +0.0
331,356 - SO0326 0.14 -0.7
331,371 + SO0326 0.16 -0.8
331,384 - SO0326 0.17 +1.5
331,415 + SO0326 0.21 -0.5
331,451 + SO0326 0.24 +0.3
331,451 + SO0326 0.24 -0.3
331,459 - SO0326 0.25 -1.7
331,472 + SO0326 0.27 -1.0
331,473 + SO0326 0.27 -0.7
331,644 + SO0326 0.45 +0.9
331,751 - SO0326 0.57 -0.6
331,777 - SO0326 0.60 -0.5
331,777 - SO0326 0.60 -1.1
331,835 - SO0326 0.66 -1.3
331,839 + SO0326 0.66 -0.9
331,859 + SO0326 0.69 -1.0
331,859 + SO0326 0.69 -2.4
331,859 + SO0326 0.69 +1.2
331,859 + SO0326 0.69 -0.3
331,859 + SO0326 0.69 -1.2
331,859 + SO0326 0.69 -0.1
331,859 + SO0326 0.69 +0.9
331,893 + SO0326 0.72 +1.2
331,976 - SO0326 0.81 -0.1
332,021 + SO0326 0.86 +1.6
332,192 + +0.5
332,210 - -2.3
332,219 - +1.4
332,219 - +0.6
332,260 + +0.2
332,260 + +1.1
332,260 + +2.6
332,268 - -0.9
332,268 - +0.6
332,268 - -0.4
332,268 - -0.4
332,292 - -1.1
332,311 - -0.4
332,352 - +1.9
332,375 + -0.9
332,383 - -0.5
332,383 - -0.5
332,383 - +0.9
332,404 - +0.7
332,418 + +2.7
332,421 - +1.5
332,426 - +1.3
332,426 - -0.7
332,477 - -1.9
332,477 - +1.4
332,530 + SO0329 0.23 +0.6
332,530 + SO0329 0.23 +1.3
332,530 + SO0329 0.23 +1.2
332,530 + SO0329 0.23 +2.1
332,538 - SO0329 0.27 +0.2
332,538 - SO0329 0.27 -2.1
332,538 - SO0329 0.27 -1.3
332,538 - SO0329 0.27 +0.9
332,540 + SO0329 0.28 +0.3
332,540 - SO0329 0.28 -0.8
332,553 + SO0329 0.34 -0.5
332,562 - SO0329 0.38 -0.4
332,568 + SO0329 0.41 +0.9
332,618 - SO0329 0.63 +1.2
332,634 - SO0329 0.70 +0.2
332,665 + SO0329 0.84 +0.2
332,673 - SO0329 0.88 +1.0
332,677 + -0.2
332,702 - -2.2
332,734 - -0.3
332,916 - SO0330 0.13 -0.3
332,916 - SO0330 0.13 +0.6
332,918 + SO0330 0.14 -1.3
332,918 + SO0330 0.14 +0.6
332,918 + SO0330 0.14 -1.0
332,918 + SO0330 0.14 -0.2
332,918 + SO0330 0.14 -1.4
332,926 - SO0330 0.14 -0.3
332,926 - SO0330 0.14 -0.3
332,926 - SO0330 0.14 +1.2
332,926 - SO0330 0.14 -1.4
332,926 - SO0330 0.14 -2.2
332,926 - SO0330 0.14 -0.6
332,926 - SO0330 0.14 -1.0
332,950 - SO0330 0.16 +0.9
332,982 - SO0330 0.18 -0.1
332,999 + SO0330 0.19 +1.7
332,999 + SO0330 0.19 +2.9
333,007 - SO0330 0.20 +0.6
333,031 - SO0330 0.21 -0.3
333,090 - SO0330 0.25 +0.5
333,122 + SO0330 0.28 +0.4
333,142 + SO0330 0.29 +1.8

Or see this region's nucleotide sequence