Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3926 and Dshi_3927 are separated by 62 nucleotides Dshi_3927 and Dshi_3928 are separated by 166 nucleotides
Dshi_3926: Dshi_3926 - hypothetical protein (RefSeq), at 149,344 to 150,306
_3926
Dshi_3927: Dshi_3927 - hypothetical protein (RefSeq), at 150,369 to 150,764
_3927
Dshi_3928: Dshi_3928 - homocysteine S-methyltransferase (RefSeq), at 150,931 to 151,857
_3928
Position (kb) 150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.382 kb on - strand at 149.461 kb on + strand, within Dshi_3926 at 149.510 kb on + strand, within Dshi_3926 at 149.723 kb on + strand, within Dshi_3926 at 149.732 kb on - strand, within Dshi_3926 at 149.787 kb on - strand, within Dshi_3926 at 149.836 kb on - strand, within Dshi_3926 at 149.838 kb on + strand, within Dshi_3926 at 149.879 kb on + strand, within Dshi_3926 at 149.922 kb on - strand, within Dshi_3926 at 149.963 kb on + strand, within Dshi_3926 at 150.304 kb on + strand at 150.365 kb on - strand at 150.449 kb on - strand, within Dshi_3927 at 150.630 kb on - strand, within Dshi_3927 at 150.638 kb on + strand, within Dshi_3927 at 150.662 kb on + strand, within Dshi_3927 at 150.881 kb on + strand at 150.894 kb on - strand at 150.951 kb on - strand at 151.048 kb on + strand, within Dshi_3928 at 151.098 kb on - strand, within Dshi_3928 at 151.126 kb on - strand, within Dshi_3928 at 151.303 kb on - strand, within Dshi_3928 at 151.427 kb on - strand, within Dshi_3928 at 151.428 kb on - strand, within Dshi_3928 at 151.489 kb on + strand, within Dshi_3928 at 151.521 kb on + strand, within Dshi_3928 at 151.641 kb on - strand, within Dshi_3928 at 151.710 kb on + strand, within Dshi_3928 at 151.715 kb on + strand, within Dshi_3928 at 151.718 kb on - strand, within Dshi_3928 at 151.723 kb on - strand, within Dshi_3928
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 149,382 - +1.2 149,461 + Dshi_3926 0.12 -1.9 149,510 + Dshi_3926 0.17 +0.4 149,723 + Dshi_3926 0.39 -0.1 149,732 - Dshi_3926 0.40 -0.1 149,787 - Dshi_3926 0.46 +1.0 149,836 - Dshi_3926 0.51 +0.4 149,838 + Dshi_3926 0.51 +0.2 149,879 + Dshi_3926 0.56 -0.4 149,922 - Dshi_3926 0.60 -0.4 149,963 + Dshi_3926 0.64 -0.3 150,304 + -3.3 150,365 - +1.9 150,449 - Dshi_3927 0.20 -3.4 150,630 - Dshi_3927 0.66 +0.0 150,638 + Dshi_3927 0.68 +1.4 150,662 + Dshi_3927 0.74 -0.9 150,881 + +0.4 150,894 - -1.6 150,951 - +0.4 151,048 + Dshi_3928 0.13 -2.9 151,098 - Dshi_3928 0.18 +0.4 151,126 - Dshi_3928 0.21 +0.4 151,303 - Dshi_3928 0.40 +0.4 151,427 - Dshi_3928 0.54 -0.6 151,428 - Dshi_3928 0.54 -0.3 151,489 + Dshi_3928 0.60 -1.1 151,521 + Dshi_3928 0.64 -0.4 151,641 - Dshi_3928 0.77 +0.2 151,710 + Dshi_3928 0.84 +2.0 151,715 + Dshi_3928 0.85 +0.1 151,718 - Dshi_3928 0.85 -2.6 151,723 - Dshi_3928 0.85 +0.5
Or see this region's nucleotide sequence