Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3910

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
137,542	+		Dshi_3908	0.50	-0.9
137,542	+		Dshi_3908	0.50	-0.3
137,554	+		Dshi_3908	0.51	-0.0
137,588	-		Dshi_3908	0.54	+0.1
137,674	+		Dshi_3908	0.61	+0.7
137,674	+		Dshi_3908	0.61	+0.4
137,674	+		Dshi_3908	0.61	+0.4
137,686	+		Dshi_3908	0.62	+0.8
137,694	-		Dshi_3908	0.63	-0.5
137,696	-		Dshi_3908	0.63	-0.3
137,731	+		Dshi_3908	0.66	+0.4
137,731	+		Dshi_3908	0.66	-0.9
137,732	+		Dshi_3908	0.66	-0.1
137,739	-		Dshi_3908	0.67	-1.3
137,739	-		Dshi_3908	0.67	+1.1
137,739	-		Dshi_3908	0.67	-0.6
137,739	-		Dshi_3908	0.67	+0.5
137,739	-		Dshi_3908	0.67	+0.0
137,798	+		Dshi_3908	0.72	+0.1
137,840	+		Dshi_3908	0.76	+0.2
137,845	+		Dshi_3908	0.76	-0.9
137,871	-		Dshi_3908	0.78	+0.3
137,882	+		Dshi_3908	0.79	+1.4
137,895	-		Dshi_3908	0.80	+0.2
137,900	-		Dshi_3908	0.81	-1.0
137,900	-		Dshi_3908	0.81	+0.6
137,906	+		Dshi_3908	0.81	-0.1
137,921	-		Dshi_3908	0.83	-0.4
137,962	-		Dshi_3908	0.86	+0.6
137,967	-		Dshi_3908	0.87	+0.3
137,967	-		Dshi_3908	0.87	+0.5
137,979	-		Dshi_3908	0.88	+0.9
137,997	+		Dshi_3908	0.89	-1.3
138,001	-		Dshi_3908	0.89	-0.3
138,014	-				+0.6
138,048	+				+0.8
138,049	+				-1.2
138,052	-				-1.3
138,072	+				-0.7
138,075	-				+0.5
138,128	-				+1.4
138,132	+				+0.5
138,138	-				-0.1
138,154	+		Dshi_3909	0.11	-0.1
138,160	+		Dshi_3909	0.13	+0.4
138,160	+		Dshi_3909	0.13	+0.2
138,165	+		Dshi_3909	0.15	+0.3
138,189	-		Dshi_3909	0.24	-1.3
138,193	-		Dshi_3909	0.25	+1.1
138,197	-		Dshi_3909	0.27	+0.4
138,232	-		Dshi_3909	0.40	-0.2
138,253	+		Dshi_3909	0.47	-0.6
138,278	+		Dshi_3909	0.56	+1.1
138,313	-		Dshi_3909	0.69	+1.1
138,313	-		Dshi_3909	0.69	+0.6
138,315	+		Dshi_3909	0.70	-0.8
138,323	-		Dshi_3909	0.73	+0.3
138,344	-		Dshi_3909	0.81	+1.1
138,384	+				-0.1
138,392	+				-0.3
138,394	+				-0.1
138,395	+				+0.2
138,400	-				+0.8
138,402	-				+0.8
138,403	+				+0.7
138,403	+				+1.3
138,403	+				-0.1
138,403	+				-0.6
138,403	+				-0.3
138,403	+				+0.0
138,403	+				+1.1
138,403	+				-0.4
138,403	+				+0.3
138,403	+				+0.7
138,403	+				-0.5
138,403	-				+1.1
138,405	+				-0.5
138,407	+				-0.1
138,411	-				+0.4
138,411	-				-0.2
138,411	-				+0.4
138,411	-				+0.2
138,413	-				+1.3
138,413	-				+0.0
138,419	-				+0.3
138,424	-				+0.1
138,449	+				+0.5
138,449	+				+0.2
138,449	+				+1.0
138,449	+				+0.4
138,449	+				+0.3
138,457	-				+0.7
138,457	-				+0.7
138,457	-				+0.2
138,457	-				+0.1
138,484	+				+0.2
138,492	-				+0.4
138,549	-				+1.0
138,557	+				-0.0
138,587	-		Dshi_3910	0.15	-3.0
138,587	-		Dshi_3910	0.15	-1.4
138,594	-		Dshi_3910	0.17	-0.4
138,634	+		Dshi_3910	0.28	+0.4
138,660	+		Dshi_3910	0.35	+0.6
138,702	+		Dshi_3910	0.46	+0.4
138,711	+		Dshi_3910	0.48	-0.4
138,718	-		Dshi_3910	0.50	-0.0
138,719	-		Dshi_3910	0.50	+0.8
138,719	-		Dshi_3910	0.50	+1.5
138,719	-		Dshi_3910	0.50	+1.0
138,721	+		Dshi_3910	0.51	-0.5
138,721	+		Dshi_3910	0.51	+0.8
138,801	-		Dshi_3910	0.72	+0.9
138,810	-		Dshi_3910	0.74	+0.4
138,813	+		Dshi_3910	0.75	+0.8
138,855	-		Dshi_3910	0.86	+0.1
138,866	-		Dshi_3910	0.89	-0.5
138,891	+				+1.4
138,901	-				+0.6
138,903	+				+1.1
138,905	-				+0.1
138,923	-				+0.1
138,970	-				-0.2
138,970	-				+1.1
138,972	+				+1.2
138,972	+				-2.0
138,972	+				+0.3
138,972	+				+0.4
138,980	-				+1.0
138,980	-				-0.1
138,980	-				+3.2
138,980	-				-1.1
138,980	-				+1.5
138,980	-				+0.0
138,980	-				+0.7
138,980	-				+0.8
138,999	-				-0.3
139,025	+				+0.3
139,025	+				+0.8
139,033	-				+0.4
139,036	+				-0.7
139,036	+				+1.4
139,039	-				+0.1
139,051	-				+0.1
139,065	+				-0.4
139,086	+				+0.7
139,094	-				-0.1
139,120	+				+0.1
139,128	-				+0.6
139,128	-				+0.4
139,128	-				+0.6
139,136	-				-0.2
139,138	-				+0.1
139,150	-				+1.7
139,161	-				-0.5
139,234	-				+0.4
139,246	+		Dshi_3911	0.11	+0.9
139,328	-		Dshi_3911	0.16	-0.9
139,362	-		Dshi_3911	0.19	+0.5
139,372	-		Dshi_3911	0.19	+0.2
139,372	-		Dshi_3911	0.19	-0.1
139,374	-		Dshi_3911	0.19	-0.1
139,399	+		Dshi_3911	0.21	+1.0
139,441	+		Dshi_3911	0.24	+0.9
139,445	-		Dshi_3911	0.24	+0.3
139,445	-		Dshi_3911	0.24	+0.9
139,445	-		Dshi_3911	0.24	+0.3
139,451	+		Dshi_3911	0.25	+0.6
139,462	+		Dshi_3911	0.25	+1.0
139,482	+		Dshi_3911	0.27	+0.0
139,495	-		Dshi_3911	0.28	-0.3
139,555	-		Dshi_3911	0.32	-0.1
139,557	+		Dshi_3911	0.32	-0.6
139,565	-		Dshi_3911	0.32	-0.3
139,565	-		Dshi_3911	0.32	+0.5
139,604	-		Dshi_3911	0.35	+0.1
139,620	+		Dshi_3911	0.36	+1.0
139,635	-		Dshi_3911	0.37	+0.4
139,637	-		Dshi_3911	0.37	+0.6
139,652	+		Dshi_3911	0.38	+0.5
139,660	-		Dshi_3911	0.39	+0.9
139,667	+		Dshi_3911	0.39	+0.8
139,683	+		Dshi_3911	0.41	-0.5
139,701	-		Dshi_3911	0.42	-0.1
139,705	-		Dshi_3911	0.42	-0.2
139,737	-		Dshi_3911	0.44	-0.9
139,778	-		Dshi_3911	0.47	+0.0
139,863	+		Dshi_3911	0.53	-0.7
139,897	-		Dshi_3911	0.55	+0.3
139,907	+		Dshi_3911	0.56	+0.6
139,907	+		Dshi_3911	0.56	+0.3