Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3641

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3638 and Dshi_3639 overlap by 4 nucleotidesDshi_3639 and Dshi_3640 overlap by 8 nucleotidesDshi_3640 and Dshi_3641 overlap by 11 nucleotidesDshi_3641 and Dshi_3642 overlap by 4 nucleotidesDshi_3642 and Dshi_3643 overlap by 11 nucleotides Dshi_3638: Dshi_3638 - Lytic transglycosylase catalytic (RefSeq), at 39,177 to 39,797 _3638 Dshi_3639: Dshi_3639 - Conjugal transfer protein TrbC (RefSeq), at 39,794 to 40,087 _3639 Dshi_3640: Dshi_3640 - type IV secretory pathway VirB3 family protein (RefSeq), at 40,080 to 40,358 _3640 Dshi_3641: Dshi_3641 - CagE TrbE VirB component of type IV transporter system (RefSeq), at 40,348 to 42,723 _3641 Dshi_3642: Dshi_3642 - hypothetical protein (RefSeq), at 42,720 to 42,887 _3642 Dshi_3643: Dshi_3643 - Lytic transglycosylase catalytic (RefSeq), at 42,877 to 44,031 _3643 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 39.360 kb on + strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.360 kb on + strand, within Dshi_3638at 39.368 kb on - strand, within Dshi_3638at 39.373 kb on - strand, within Dshi_3638at 39.373 kb on - strand, within Dshi_3638at 39.380 kb on + strand, within Dshi_3638at 39.386 kb on - strand, within Dshi_3638at 39.395 kb on + strand, within Dshi_3638at 39.402 kb on + strand, within Dshi_3638at 39.402 kb on + strand, within Dshi_3638at 39.407 kb on + strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.410 kb on - strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.426 kb on + strand, within Dshi_3638at 39.430 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.434 kb on - strand, within Dshi_3638at 39.444 kb on - strand, within Dshi_3638at 39.460 kb on + strand, within Dshi_3638at 39.473 kb on - strand, within Dshi_3638at 39.494 kb on - strand, within Dshi_3638at 39.507 kb on - strand, within Dshi_3638at 39.521 kb on - strand, within Dshi_3638at 39.554 kb on + strand, within Dshi_3638at 39.556 kb on - strand, within Dshi_3638at 39.556 kb on - strand, within Dshi_3638at 39.585 kb on - strand, within Dshi_3638at 39.600 kb on - strand, within Dshi_3638at 39.602 kb on - strand, within Dshi_3638at 39.668 kb on - strand, within Dshi_3638at 39.682 kb on + strand, within Dshi_3638at 39.697 kb on - strand, within Dshi_3638at 39.715 kb on + strand, within Dshi_3638at 39.716 kb on - strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.735 kb on + strand, within Dshi_3638at 39.742 kb on + strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.743 kb on - strandat 39.748 kb on - strandat 39.779 kb on - strandat 39.811 kb on + strandat 39.848 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.858 kb on + strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.866 kb on - strand, within Dshi_3639at 39.870 kb on + strand, within Dshi_3639at 39.882 kb on + strand, within Dshi_3639at 39.887 kb on + strand, within Dshi_3639at 39.887 kb on + strand, within Dshi_3639at 39.930 kb on + strand, within Dshi_3639at 39.941 kb on + strand, within Dshi_3639at 39.971 kb on + strand, within Dshi_3639at 39.993 kb on + strand, within Dshi_3639at 40.030 kb on - strand, within Dshi_3639at 40.030 kb on - strand, within Dshi_3639at 40.229 kb on + strand, within Dshi_3640at 40.229 kb on + strand, within Dshi_3640at 40.229 kb on + strand, within Dshi_3640at 40.229 kb on + strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.237 kb on - strand, within Dshi_3640at 40.288 kb on + strand, within Dshi_3640at 40.296 kb on - strand, within Dshi_3640at 40.335 kb on + strandat 40.345 kb on + strandat 40.345 kb on + strandat 40.346 kb on - strandat 40.353 kb on - strandat 40.353 kb on - strandat 40.353 kb on - strandat 40.353 kb on - strandat 40.399 kb on - strandat 40.448 kb on - strandat 40.471 kb on + strandat 40.492 kb on + strandat 40.516 kb on + strandat 40.532 kb on + strandat 40.551 kb on + strandat 40.598 kb on - strand, within Dshi_3641at 40.617 kb on + strand, within Dshi_3641at 40.634 kb on - strand, within Dshi_3641at 40.634 kb on - strand, within Dshi_3641at 40.648 kb on - strand, within Dshi_3641at 40.655 kb on + strand, within Dshi_3641at 40.690 kb on - strand, within Dshi_3641at 40.690 kb on - strand, within Dshi_3641at 40.690 kb on - strand, within Dshi_3641at 40.700 kb on - strand, within Dshi_3641at 40.758 kb on - strand, within Dshi_3641at 40.812 kb on + strand, within Dshi_3641at 40.978 kb on + strand, within Dshi_3641at 40.983 kb on + strand, within Dshi_3641at 41.019 kb on - strand, within Dshi_3641at 41.042 kb on + strand, within Dshi_3641at 41.085 kb on + strand, within Dshi_3641at 41.169 kb on - strand, within Dshi_3641at 41.174 kb on + strand, within Dshi_3641at 41.178 kb on - strand, within Dshi_3641at 41.182 kb on - strand, within Dshi_3641at 41.204 kb on - strand, within Dshi_3641at 41.280 kb on - strand, within Dshi_3641at 41.281 kb on - strand, within Dshi_3641at 41.315 kb on + strand, within Dshi_3641at 41.456 kb on + strand, within Dshi_3641at 41.464 kb on - strand, within Dshi_3641at 41.617 kb on - strand, within Dshi_3641at 41.678 kb on + strand, within Dshi_3641at 41.686 kb on - strand, within Dshi_3641at 41.686 kb on - strand, within Dshi_3641at 41.686 kb on - strand, within Dshi_3641at 41.688 kb on + strand, within Dshi_3641at 41.691 kb on - strand, within Dshi_3641at 41.699 kb on + strand, within Dshi_3641at 41.858 kb on - strand, within Dshi_3641at 41.881 kb on - strand, within Dshi_3641at 41.926 kb on + strand, within Dshi_3641at 41.928 kb on + strand, within Dshi_3641at 41.928 kb on + strand, within Dshi_3641at 41.936 kb on - strand, within Dshi_3641at 41.936 kb on - strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.954 kb on + strand, within Dshi_3641at 41.955 kb on - strand, within Dshi_3641at 41.959 kb on + strand, within Dshi_3641at 41.964 kb on + strand, within Dshi_3641at 41.967 kb on - strand, within Dshi_3641at 42.014 kb on - strand, within Dshi_3641at 42.019 kb on - strand, within Dshi_3641at 42.019 kb on - strand, within Dshi_3641at 42.229 kb on + strand, within Dshi_3641at 42.574 kb on - strandat 42.599 kb on - strandat 42.749 kb on + strand, within Dshi_3642at 42.764 kb on - strand, within Dshi_3642at 42.784 kb on - strand, within Dshi_3642at 42.830 kb on - strand, within Dshi_3642at 42.889 kb on - strandat 42.889 kb on - strandat 42.901 kb on - strandat 42.906 kb on - strandat 42.911 kb on + strandat 42.940 kb on + strandat 42.941 kb on - strandat 42.942 kb on - strandat 43.000 kb on + strand, within Dshi_3643at 43.032 kb on - strand, within Dshi_3643at 43.087 kb on - strand, within Dshi_3643at 43.099 kb on + strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.118 kb on - strand, within Dshi_3643at 43.125 kb on - strand, within Dshi_3643at 43.189 kb on + strand, within Dshi_3643at 43.228 kb on + strand, within Dshi_3643at 43.326 kb on + strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.356 kb on - strand, within Dshi_3643at 43.412 kb on + strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.471 kb on - strand, within Dshi_3643at 43.481 kb on + strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.535 kb on - strand, within Dshi_3643at 43.575 kb on - strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.639 kb on + strand, within Dshi_3643at 43.644 kb on + strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.646 kb on - strand, within Dshi_3643at 43.648 kb on + strand, within Dshi_3643at 43.657 kb on - strand, within Dshi_3643at 43.672 kb on - strand, within Dshi_3643at 43.688 kb on + strand, within Dshi_3643

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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39,360 + Dshi_3638 0.29 -0.2
39,360 + Dshi_3638 0.29 -0.2
39,360 + Dshi_3638 0.29 -1.6
39,368 - Dshi_3638 0.31 +0.0
39,373 - Dshi_3638 0.32 -2.1
39,373 - Dshi_3638 0.32 -0.5
39,380 + Dshi_3638 0.33 +0.9
39,386 - Dshi_3638 0.34 -0.0
39,395 + Dshi_3638 0.35 +0.6
39,402 + Dshi_3638 0.36 -0.4
39,402 + Dshi_3638 0.36 -0.4
39,407 + Dshi_3638 0.37 -1.1
39,410 - Dshi_3638 0.38 -1.1
39,410 - Dshi_3638 0.38 -0.6
39,410 - Dshi_3638 0.38 +0.0
39,426 + Dshi_3638 0.40 -0.4
39,426 + Dshi_3638 0.40 +0.2
39,426 + Dshi_3638 0.40 +0.1
39,430 - Dshi_3638 0.41 +0.4
39,434 - Dshi_3638 0.41 -0.2
39,434 - Dshi_3638 0.41 +0.2
39,434 - Dshi_3638 0.41 -0.1
39,434 - Dshi_3638 0.41 -0.4
39,434 - Dshi_3638 0.41 -2.1
39,434 - Dshi_3638 0.41 +0.1
39,434 - Dshi_3638 0.41 -1.2
39,434 - Dshi_3638 0.41 -0.2
39,434 - Dshi_3638 0.41 +0.4
39,444 - Dshi_3638 0.43 -0.7
39,460 + Dshi_3638 0.46 -0.3
39,473 - Dshi_3638 0.48 -1.2
39,494 - Dshi_3638 0.51 -2.1
39,507 - Dshi_3638 0.53 -0.8
39,521 - Dshi_3638 0.55 +0.9
39,554 + Dshi_3638 0.61 -0.3
39,556 - Dshi_3638 0.61 -1.3
39,556 - Dshi_3638 0.61 +0.1
39,585 - Dshi_3638 0.66 +0.5
39,600 - Dshi_3638 0.68 +0.0
39,602 - Dshi_3638 0.68 -0.7
39,668 - Dshi_3638 0.79 +0.3
39,682 + Dshi_3638 0.81 +0.3
39,697 - Dshi_3638 0.84 -0.4
39,715 + Dshi_3638 0.87 +0.6
39,716 - Dshi_3638 0.87 -1.1
39,735 + Dshi_3638 0.90 +0.2
39,735 + Dshi_3638 0.90 +1.5
39,735 + Dshi_3638 0.90 +0.7
39,742 + +0.3
39,743 - +0.1
39,743 - +0.3
39,743 - +0.4
39,743 - -0.7
39,743 - +0.5
39,748 - +1.2
39,779 - -0.5
39,811 + -0.8
39,848 + Dshi_3639 0.18 -0.1
39,858 + Dshi_3639 0.22 -0.6
39,858 + Dshi_3639 0.22 -0.7
39,858 + Dshi_3639 0.22 -0.0
39,866 - Dshi_3639 0.24 -0.7
39,866 - Dshi_3639 0.24 +0.4
39,866 - Dshi_3639 0.24 -2.0
39,866 - Dshi_3639 0.24 -0.1
39,866 - Dshi_3639 0.24 -0.5
39,870 + Dshi_3639 0.26 -0.5
39,882 + Dshi_3639 0.30 +0.0
39,887 + Dshi_3639 0.32 -0.8
39,887 + Dshi_3639 0.32 +0.2
39,930 + Dshi_3639 0.46 -0.5
39,941 + Dshi_3639 0.50 -0.7
39,971 + Dshi_3639 0.60 +0.6
39,993 + Dshi_3639 0.68 -1.6
40,030 - Dshi_3639 0.80 -0.5
40,030 - Dshi_3639 0.80 -0.3
40,229 + Dshi_3640 0.53 -1.9
40,229 + Dshi_3640 0.53 -0.5
40,229 + Dshi_3640 0.53 +0.9
40,229 + Dshi_3640 0.53 -0.7
40,237 - Dshi_3640 0.56 +0.3
40,237 - Dshi_3640 0.56 -0.8
40,237 - Dshi_3640 0.56 +0.3
40,237 - Dshi_3640 0.56 -0.5
40,288 + Dshi_3640 0.75 -0.7
40,296 - Dshi_3640 0.77 -1.5
40,335 + +0.6
40,345 + +0.8
40,345 + +0.4
40,346 - -0.2
40,353 - -0.4
40,353 - -0.5
40,353 - -1.3
40,353 - +0.4
40,399 - -0.3
40,448 - -0.6
40,471 + -0.1
40,492 + -1.0
40,516 + -4.3
40,532 + -2.0
40,551 + -0.4
40,598 - Dshi_3641 0.11 -0.1
40,617 + Dshi_3641 0.11 +0.1
40,634 - Dshi_3641 0.12 -0.7
40,634 - Dshi_3641 0.12 -1.0
40,648 - Dshi_3641 0.13 -2.9
40,655 + Dshi_3641 0.13 -0.7
40,690 - Dshi_3641 0.14 -0.2
40,690 - Dshi_3641 0.14 +0.1
40,690 - Dshi_3641 0.14 -0.2
40,700 - Dshi_3641 0.15 +0.1
40,758 - Dshi_3641 0.17 -0.2
40,812 + Dshi_3641 0.20 +0.4
40,978 + Dshi_3641 0.27 -0.4
40,983 + Dshi_3641 0.27 -1.0
41,019 - Dshi_3641 0.28 -0.1
41,042 + Dshi_3641 0.29 -0.1
41,085 + Dshi_3641 0.31 +0.7
41,169 - Dshi_3641 0.35 +0.4
41,174 + Dshi_3641 0.35 -0.8
41,178 - Dshi_3641 0.35 +1.4
41,182 - Dshi_3641 0.35 +0.3
41,204 - Dshi_3641 0.36 +1.4
41,280 - Dshi_3641 0.39 +0.3
41,281 - Dshi_3641 0.39 +1.0
41,315 + Dshi_3641 0.41 +0.9
41,456 + Dshi_3641 0.47 +0.2
41,464 - Dshi_3641 0.47 -0.7
41,617 - Dshi_3641 0.53 +0.2
41,678 + Dshi_3641 0.56 +0.2
41,686 - Dshi_3641 0.56 +0.3
41,686 - Dshi_3641 0.56 +0.3
41,686 - Dshi_3641 0.56 -0.8
41,688 + Dshi_3641 0.56 +0.1
41,691 - Dshi_3641 0.57 +0.0
41,699 + Dshi_3641 0.57 -0.2
41,858 - Dshi_3641 0.64 +0.1
41,881 - Dshi_3641 0.65 +0.5
41,926 + Dshi_3641 0.66 -0.3
41,928 + Dshi_3641 0.66 +0.3
41,928 + Dshi_3641 0.66 -0.7
41,936 - Dshi_3641 0.67 +0.1
41,936 - Dshi_3641 0.67 +0.4
41,954 + Dshi_3641 0.68 +0.5
41,954 + Dshi_3641 0.68 +1.2
41,954 + Dshi_3641 0.68 -0.5
41,955 - Dshi_3641 0.68 -0.5
41,959 + Dshi_3641 0.68 -1.3
41,964 + Dshi_3641 0.68 +0.4
41,967 - Dshi_3641 0.68 -0.2
42,014 - Dshi_3641 0.70 +0.1
42,019 - Dshi_3641 0.70 +0.3
42,019 - Dshi_3641 0.70 +0.4
42,229 + Dshi_3641 0.79 -0.5
42,574 - -0.9
42,599 - -0.3
42,749 + Dshi_3642 0.17 -0.3
42,764 - Dshi_3642 0.26 +1.8
42,784 - Dshi_3642 0.38 -0.2
42,830 - Dshi_3642 0.65 +0.6
42,889 - +0.1
42,889 - -0.9
42,901 - -0.5
42,906 - -0.5
42,911 + +2.5
42,940 + +0.9
42,941 - +0.9
42,942 - +0.2
43,000 + Dshi_3643 0.11 +0.3
43,032 - Dshi_3643 0.13 +0.7
43,087 - Dshi_3643 0.18 -0.2
43,099 + Dshi_3643 0.19 -1.4
43,107 - Dshi_3643 0.20 +0.8
43,107 - Dshi_3643 0.20 -0.3
43,107 - Dshi_3643 0.20 -0.1
43,118 - Dshi_3643 0.21 +0.6
43,125 - Dshi_3643 0.21 -0.9
43,189 + Dshi_3643 0.27 +0.3
43,228 + Dshi_3643 0.30 -1.3
43,326 + Dshi_3643 0.39 +0.3
43,331 - Dshi_3643 0.39 -0.6
43,331 - Dshi_3643 0.39 -0.4
43,341 - Dshi_3643 0.40 -1.7
43,341 - Dshi_3643 0.40 -1.5
43,356 - Dshi_3643 0.41 +0.2
43,412 + Dshi_3643 0.46 -1.4
43,420 - Dshi_3643 0.47 +0.0
43,420 - Dshi_3643 0.47 +0.1
43,436 - Dshi_3643 0.48 -0.8
43,436 - Dshi_3643 0.48 -0.4
43,436 - Dshi_3643 0.48 -1.6
43,471 - Dshi_3643 0.51 -0.8
43,481 + Dshi_3643 0.52 -1.1
43,489 - Dshi_3643 0.53 -0.6
43,489 - Dshi_3643 0.53 -0.7
43,535 - Dshi_3643 0.57 -0.7
43,575 - Dshi_3643 0.60 +0.3
43,627 + Dshi_3643 0.65 -1.5
43,627 + Dshi_3643 0.65 +0.4
43,639 + Dshi_3643 0.66 +0.7
43,644 + Dshi_3643 0.66 +0.0
43,645 - Dshi_3643 0.66 -0.7
43,645 - Dshi_3643 0.66 -0.5
43,645 - Dshi_3643 0.66 +0.9
43,646 - Dshi_3643 0.67 +1.1
43,648 + Dshi_3643 0.67 +0.3
43,657 - Dshi_3643 0.68 +0.1
43,672 - Dshi_3643 0.69 +0.1
43,688 + Dshi_3643 0.70 +0.0

Or see this region's nucleotide sequence