Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2858 and Dshi_2859 overlap by 4 nucleotides Dshi_2859 and Dshi_2860 overlap by 4 nucleotides Dshi_2860 and Dshi_2861 are separated by 92 nucleotides Dshi_2861 and Dshi_2862 are separated by 29 nucleotides
Dshi_2858: Dshi_2858 - purine nucleoside phosphorylase (RefSeq), at 3,016,895 to 3,017,599
_2858
Dshi_2859: Dshi_2859 - hypothetical protein (RefSeq), at 3,017,596 to 3,018,039
_2859
Dshi_2860: Dshi_2860 - hypothetical protein (RefSeq), at 3,018,036 to 3,018,221
_2860
Dshi_2861: Dshi_2861 - succinate dehydrogenase and fumarate reductase iron-sulfur protein (RefSeq), at 3,018,314 to 3,019,093
_2861
Dshi_2862: Dshi_2862 - hypothetical protein (RefSeq), at 3,019,123 to 3,019,902
_2862
Position (kb) 3018
3019 Strain fitness (log2 ratio) -2
-1
0
1 at 3017.113 kb on - strand, within Dshi_2858 at 3017.144 kb on + strand, within Dshi_2858 at 3017.358 kb on - strand, within Dshi_2858 at 3017.530 kb on + strand at 3017.589 kb on - strand at 3017.644 kb on - strand, within Dshi_2859 at 3017.758 kb on - strand, within Dshi_2859 at 3018.308 kb on - strand at 3019.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,017,113 - Dshi_2858 0.31 -2.5 3,017,144 + Dshi_2858 0.35 -1.0 3,017,358 - Dshi_2858 0.66 -1.1 3,017,530 + -0.5 3,017,589 - -0.4 3,017,644 - Dshi_2859 0.11 -1.1 3,017,758 - Dshi_2859 0.36 -1.5 3,018,308 - -1.2 3,019,175 + -0.1
Or see this region's nucleotide sequence