Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2097

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2096 and Dshi_2097 are separated by 18 nucleotidesDshi_2097 and Dshi_2098 are separated by 119 nucleotides Dshi_2096: Dshi_2096 - cobyric acid synthase CobQ (RefSeq), at 2,219,140 to 2,220,600 _2096 Dshi_2097: Dshi_2097 - hypothetical protein (RefSeq), at 2,220,619 to 2,221,347 _2097 Dshi_2098: Dshi_2098 - type I secretion outer membrane protein, TolC family (RefSeq), at 2,221,467 to 2,222,837 _2098 Position (kb) 2220 2221 2222Strain fitness (log2 ratio) -2 -1 0 1at 2220.576 kb on + strandat 2220.576 kb on + strandat 2220.636 kb on + strandat 2220.670 kb on + strandat 2220.877 kb on - strand, within Dshi_2097at 2220.877 kb on - strand, within Dshi_2097at 2220.878 kb on + strand, within Dshi_2097at 2221.026 kb on + strand, within Dshi_2097at 2221.034 kb on - strand, within Dshi_2097at 2221.036 kb on - strand, within Dshi_2097at 2221.130 kb on + strand, within Dshi_2097

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,220,576 + -0.9
2,220,576 + -2.7
2,220,636 + -1.0
2,220,670 + -1.4
2,220,877 - Dshi_2097 0.35 -1.5
2,220,877 - Dshi_2097 0.35 -2.0
2,220,878 + Dshi_2097 0.36 -1.3
2,221,026 + Dshi_2097 0.56 -2.0
2,221,034 - Dshi_2097 0.57 +1.0
2,221,036 - Dshi_2097 0.57 +1.3
2,221,130 + Dshi_2097 0.70 -0.6

Or see this region's nucleotide sequence