Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2086

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
2,205,891	+		Dshi_2085	0.44	-1.1
2,205,945	+		Dshi_2085	0.51	-2.3
2,205,953	-		Dshi_2085	0.53	+2.9
2,206,020	+		Dshi_2085	0.61	-0.5
2,206,028	+		Dshi_2085	0.63	+0.5
2,206,048	+		Dshi_2085	0.65	-1.7
2,206,050	-		Dshi_2085	0.65	+0.0
2,206,062	+		Dshi_2085	0.67	+0.3
2,206,080	-		Dshi_2085	0.69	+0.6
2,206,118	+		Dshi_2085	0.75	-0.7
2,206,125	+		Dshi_2085	0.75	+0.3
2,206,126	-		Dshi_2085	0.76	-1.3
2,206,133	+		Dshi_2085	0.77	+0.3
2,206,133	-		Dshi_2085	0.77	+0.2
2,206,145	+		Dshi_2085	0.78	-2.5
2,206,168	-		Dshi_2085	0.81	+0.1
2,206,223	-		Dshi_2085	0.89	-2.7
2,206,251	+				+0.0
2,206,262	+				-2.9
2,206,293	+				+0.5
2,206,293	+				+2.3
2,206,316	+				-0.0
2,206,328	+				-0.4
2,206,336	-				+0.3
2,206,341	+				+1.0
2,206,341	+				+1.1
2,206,346	-				-0.3
2,206,349	-				-2.3
2,206,349	-				+0.3
2,206,349	-				-2.5
2,206,363	+				+0.3
2,206,366	+				-1.5
2,206,366	+				+0.5
2,206,374	-				+1.9
2,206,374	-				+0.5
2,206,416	+				-3.3
2,206,416	+				+0.2
2,206,441	-				-1.3
2,206,490	+				-0.7
2,206,500	+				+0.9
2,206,500	+				+0.2
2,206,500	-				+0.3
2,206,501	+				+2.0
2,206,501	+				+0.3
2,206,501	+				+0.3
2,206,501	+				-0.1
2,206,501	+				+1.3
2,206,501	+				-1.5
2,206,501	+				-1.3
2,206,509	-				+0.3
2,206,509	-				-0.4
2,206,509	-				+0.2
2,206,509	-				+1.5
2,206,520	-				-1.1
2,206,525	-				-1.0
2,206,525	-				+0.3
2,206,535	-				-2.9
2,206,535	-				-0.7
2,206,543	+				-1.5
2,206,550	+				-0.1
2,206,550	+				+0.3
2,206,550	+				-0.7
2,206,550	-				+0.6
2,206,551	-				+0.3
2,206,555	+				-1.3
2,206,558	-				+0.5
2,206,558	-				-2.3
2,206,560	+				+0.6
2,206,563	-				+0.1
2,206,565	+				-1.5
2,206,566	-				-0.3
2,206,569	+				-1.5
2,206,570	+				-1.3
2,206,573	-				+1.8
2,206,573	-				-2.0
2,206,574	+				-2.9
2,206,577	-				-2.3
2,206,579	+				+0.1
2,206,582	-				+0.1
2,206,582	-				+1.3
2,206,584	+				-0.6
2,206,592	-				-1.5
2,206,592	-				+1.4
2,206,597	-				-1.3
2,206,602	-				-1.3
2,206,637	+				-1.4
2,206,638	+				+0.2
2,206,645	-				+1.6
2,206,646	-				-0.3
2,206,648	+				+0.4
2,206,648	+				-1.5
2,206,648	+				-1.7
2,206,648	+				+1.3
2,206,648	+				+0.5
2,206,648	+				-1.3
2,206,648	+				+1.2
2,206,648	+				-0.3
2,206,656	-				-0.6
2,206,656	-				-0.7
2,206,656	-				+2.9
2,206,656	-				+1.7
2,206,656	-				+1.2
2,206,659	+				-0.7
2,206,665	+				-1.0
2,206,666	+				+0.6
2,206,666	+				-2.5
2,206,673	-				-1.7
2,206,673	-				+0.3
2,206,674	-				+0.3
2,206,678	-				-2.3
2,206,678	-				+2.6
2,206,695	+				-2.0
2,206,695	+				-0.2
2,206,695	+				-1.3
2,206,703	-				+0.3
2,206,716	+				+0.3
2,206,737	+				-1.2
2,206,745	+				+2.5
2,206,745	+				-0.8
2,206,745	+				-1.3
2,206,747	+				+1.1
2,206,747	+				-1.3
2,206,747	+				+0.3
2,206,753	-				+0.3
2,206,753	-				-0.7
2,206,755	-				-1.0
2,206,755	-				-0.8
2,206,794	-				+0.7
2,206,796	+				+0.9
2,206,796	+				-0.3
2,206,796	+				-3.5
2,206,814	-				+0.3
2,206,819	-				+1.0
2,206,819	-				+0.2
2,206,822	-				-1.3
2,206,824	-				+1.0
2,206,824	-				+0.3
2,206,824	-				-0.0
2,206,826	+				-1.3
2,206,850	-				-1.0
2,206,854	-				-0.5
2,206,865	+				-0.1
2,206,865	+				+0.9
2,206,867	+				+1.6
2,206,868	-				+1.8
2,206,873	-				-2.0
2,206,873	-				-2.9
2,206,873	-				-0.4
2,206,873	-				-1.1
2,206,873	-				-0.7
2,206,873	-				-0.7
2,206,873	-				-1.4
2,206,875	-				+3.1
2,206,878	+				-1.6
2,206,878	+				+2.0
2,206,878	+				+0.3
2,206,878	+				-2.7
2,206,878	+				-0.1
2,206,878	+				-1.1
2,206,878	+				-1.2
2,206,878	+				-0.6
2,206,878	+				-4.1
2,206,878	+				+0.3
2,206,878	+				+2.8
2,206,878	+				+1.9
2,206,878	+				+1.6
2,206,878	+				-0.5
2,206,881	+				-0.1
2,206,881	+				+0.3
2,206,881	+				-1.7
2,206,881	+				-2.0
2,206,881	+				-2.0
2,206,883	+				-0.5
2,206,886	-				+0.3
2,206,886	-				-1.7
2,206,886	-				-0.5
2,206,886	-				+0.9
2,206,886	-				+0.3
2,206,886	-				-0.2
2,206,886	-				-0.3
2,206,886	-				+0.8
2,206,886	-				-1.7
2,206,886	-				-1.0
2,206,886	-				+3.5
2,206,886	-				+0.5
2,206,886	-				+0.4
2,206,886	-				+0.3
2,206,886	-				+0.1
2,206,886	-				-0.7
2,206,889	-				-2.0
2,206,889	-				+0.3
2,206,889	-				+0.3
2,206,891	-				-0.7
2,206,900	-				+3.9
2,206,908	-				+0.9
2,206,910	+				-0.8
2,206,912	-				+1.1
2,206,915	+				-0.0
2,206,916	+				-0.7
2,206,923	-				-0.4
2,206,923	-				-1.3
2,206,923	-				+1.3
2,206,923	-				-2.0
2,206,925	+				-0.1
2,206,932	+				+0.7
2,206,932	+				-0.1
2,206,932	+				+1.2
2,206,938	+				+1.0
2,206,939	+				-0.6
2,206,940	-				-0.3
2,206,940	-				+0.3
2,206,951	-				+1.5
2,206,956	-				+0.8
2,206,961	-				+4.2
2,206,966	-				-0.2
2,206,966	-				+2.9
2,206,966	-				-1.3
2,206,995	-				+1.6
2,206,995	-				-2.1
2,206,995	-				-0.3
2,207,017	+				-0.7
2,207,025	-				-1.2
2,207,036	+				+0.3
2,207,042	-				+0.3
2,207,049	-				+0.2
2,207,056	-				-0.0
2,207,169	-		Dshi_2086	0.13	+2.3
2,207,190	+		Dshi_2086	0.13	-0.7
2,207,191	+		Dshi_2086	0.13	+0.3
2,207,196	+		Dshi_2086	0.14	+0.7
2,207,205	-		Dshi_2086	0.14	-1.0
2,207,217	+		Dshi_2086	0.15	-0.6
2,207,219	-		Dshi_2086	0.15	-0.3
2,207,233	-		Dshi_2086	0.15	-1.5
2,207,310	+		Dshi_2086	0.19	+0.3
2,207,365	+		Dshi_2086	0.21	-3.2
2,207,387	-		Dshi_2086	0.22	-0.0
2,207,479	+		Dshi_2086	0.26	-0.7
2,207,489	+		Dshi_2086	0.26	-0.5
2,207,573	+		Dshi_2086	0.30	-3.0
2,207,657	-		Dshi_2086	0.34	-1.4
2,207,731	+		Dshi_2086	0.37	-1.7
2,207,731	+		Dshi_2086	0.37	+0.9
2,207,739	-		Dshi_2086	0.37	-0.1
2,207,759	+		Dshi_2086	0.38	-0.0
2,207,818	+		Dshi_2086	0.41	+0.7
2,207,830	-		Dshi_2086	0.41	-1.2
2,207,923	+		Dshi_2086	0.45	-0.1
2,207,933	+		Dshi_2086	0.46	+0.7
2,207,941	-		Dshi_2086	0.46	-2.4
2,207,941	-		Dshi_2086	0.46	-1.5
2,207,959	+		Dshi_2086	0.47	+0.3
2,207,967	-		Dshi_2086	0.47	+0.2
2,208,016	+		Dshi_2086	0.49	-0.4
2,208,024	+		Dshi_2086	0.50	+1.9
2,208,101	+		Dshi_2086	0.53	-1.9
2,208,115	+		Dshi_2086	0.54	+0.4
2,208,139	-		Dshi_2086	0.55	-0.3
2,208,144	+		Dshi_2086	0.55	+2.3
2,208,152	+		Dshi_2086	0.55	-0.8
2,208,166	+		Dshi_2086	0.56	-0.3
2,208,189	+		Dshi_2086	0.57	+0.3
2,208,234	+		Dshi_2086	0.59	+0.3
2,208,290	-		Dshi_2086	0.61	-1.7
2,208,303	-		Dshi_2086	0.62	-2.3
2,208,367	+		Dshi_2086	0.65	-0.7
2,208,369	+		Dshi_2086	0.65	+1.9
2,208,404	+		Dshi_2086	0.66	-1.3
2,208,468	-		Dshi_2086	0.69	-0.7
2,208,485	-		Dshi_2086	0.70	-0.3
2,208,512	-		Dshi_2086	0.71	-0.7
2,208,517	-		Dshi_2086	0.71	-0.5
2,208,563	+		Dshi_2086	0.73	+0.3
2,208,574	-		Dshi_2086	0.74	-1.3
2,208,644	-		Dshi_2086	0.77	+1.7
2,208,705	+		Dshi_2086	0.79	-0.3
2,208,705	-		Dshi_2086	0.79	-0.5
2,208,804	+		Dshi_2086	0.84	-0.4
2,208,872	-		Dshi_2086	0.87	+1.5
2,208,893	-		Dshi_2086	0.88	+0.7
2,208,916	-		Dshi_2086	0.89	+1.6
2,208,994	-				+0.1
2,209,018	-				+1.3
2,209,044	+				-2.0
2,209,046	-				+0.1
2,209,074	-				-0.3
2,209,074	-				-2.3
2,209,109	+				-0.1
2,209,143	-				-2.0
2,209,186	+				+0.3
2,209,214	-				+0.0
2,209,224	+				+1.3
2,209,224	+				+0.3
2,209,232	-				+2.3
2,209,237	-				+1.3