Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1796 and Dshi_1797 are separated by 126 nucleotides Dshi_1797 and Dshi_1798 are separated by 183 nucleotides Dshi_1798 and Dshi_1799 overlap by 4 nucleotides
Dshi_1796: Dshi_1796 - anthranilate synthase component I (RefSeq), at 1,867,111 to 1,868,640
_1796
Dshi_1797: Dshi_1797 - protein of unknown function DUF610, YibQ (RefSeq), at 1,868,767 to 1,870,593
_1797
Dshi_1798: Dshi_1798 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 1,870,777 to 1,871,382
_1798
Dshi_1799: Dshi_1799 - anthranilate phosphoribosyltransferase (RefSeq), at 1,871,379 to 1,872,398
_1799
Position (kb)
1868
1869
1870
1871 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1869.102 kb on + strand at 1869.321 kb on + strand, within Dshi_1797 at 1869.321 kb on - strand, within Dshi_1797 at 1869.347 kb on - strand, within Dshi_1797 at 1869.913 kb on - strand, within Dshi_1797 at 1870.344 kb on - strand, within Dshi_1797 at 1870.559 kb on + strand at 1870.567 kb on - strand at 1870.576 kb on + strand at 1870.582 kb on + strand at 1870.599 kb on + strand at 1870.720 kb on + strand at 1870.720 kb on + strand at 1870.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,869,102 + +0.2 1,869,321 + Dshi_1797 0.30 -1.4 1,869,321 - Dshi_1797 0.30 -2.6 1,869,347 - Dshi_1797 0.32 +0.2 1,869,913 - Dshi_1797 0.63 +0.2 1,870,344 - Dshi_1797 0.86 +0.8 1,870,559 + -4.6 1,870,567 - -1.0 1,870,576 + +0.2 1,870,582 + -1.8 1,870,599 + -1.4 1,870,720 + -1.2 1,870,720 + +0.7 1,870,728 - +0.2
Or see this region's nucleotide sequence