Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1732 and Dshi_1733 overlap by 4 nucleotides Dshi_1733 and Dshi_1734 are separated by 251 nucleotides Dshi_1734 and Dshi_1735 are separated by 51 nucleotides
Dshi_1732: Dshi_1732 - modification methylase, HemK family (RefSeq), at 1,798,913 to 1,799,737
_1732
Dshi_1733: Dshi_1733 - peptide chain release factor 1 (RefSeq), at 1,799,734 to 1,800,789
_1733
Dshi_1734: Dshi_1734 - hypothetical protein (RefSeq), at 1,801,041 to 1,801,505
_1734
Dshi_1735: Dshi_1735 - putative agmatinase (RefSeq), at 1,801,557 to 1,802,531
_1735
Position (kb) 1799
1800
1801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1800.821 kb on + strand at 1801.125 kb on + strand, within Dshi_1734 at 1801.240 kb on - strand, within Dshi_1734 at 1801.361 kb on - strand, within Dshi_1734 at 1801.474 kb on + strand at 1801.518 kb on + strand at 1801.521 kb on - strand at 1801.521 kb on - strand at 1801.568 kb on - strand at 1801.578 kb on - strand at 1801.585 kb on - strand at 1801.755 kb on - strand, within Dshi_1735 at 1801.784 kb on + strand, within Dshi_1735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,800,821 + +0.9 1,801,125 + Dshi_1734 0.18 -1.9 1,801,240 - Dshi_1734 0.43 -1.2 1,801,361 - Dshi_1734 0.69 -0.9 1,801,474 + +0.4 1,801,518 + -0.9 1,801,521 - -0.8 1,801,521 - -1.9 1,801,568 - -1.9 1,801,578 - +1.9 1,801,585 - -2.4 1,801,755 - Dshi_1735 0.20 -0.3 1,801,784 + Dshi_1735 0.23 +1.1
Or see this region's nucleotide sequence