Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1115

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1114 and Dshi_1115 are separated by 81 nucleotidesDshi_1115 and Dshi_1116 are separated by 139 nucleotidesDshi_1116 and Dshi_1117 are separated by 81 nucleotides Dshi_1114: Dshi_1114 - tRNA(Ile)-lysidine synthetase (RefSeq), at 1,138,429 to 1,139,682 _1114 Dshi_1115: Dshi_1115 - ATP-dependent metalloprotease FtsH (RefSeq), at 1,139,764 to 1,141,680 _1115 Dshi_1116: Dshi_1116 - hypothetical protein (RefSeq), at 1,141,820 to 1,142,431 _1116 Dshi_1117: Dshi_1117 - thioesterase superfamily protein (RefSeq), at 1,142,513 to 1,142,929 _1117 Position (kb) 1139 1140 1141 1142Strain fitness (log2 ratio) -1 0 1 2at 1141.632 kb on - strandat 1141.803 kb on + strandat 1142.086 kb on - strand, within Dshi_1116at 1142.239 kb on + strand, within Dshi_1116at 1142.295 kb on - strand, within Dshi_1116at 1142.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,141,632 - -1.1
1,141,803 + -0.7
1,142,086 - Dshi_1116 0.43 +0.2
1,142,239 + Dshi_1116 0.68 +1.8
1,142,295 - Dshi_1116 0.78 -0.2
1,142,511 + +2.6

Or see this region's nucleotide sequence