Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0865 and Dshi_0866 are separated by 137 nucleotides Dshi_0866 and Dshi_0867 overlap by 4 nucleotides Dshi_0867 and Dshi_0868 are separated by 6 nucleotides
Dshi_0865: Dshi_0865 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 879,739 to 881,922
_0865
Dshi_0866: Dshi_0866 - alpha/beta hydrolase fold (RefSeq), at 882,060 to 882,755
_0866
Dshi_0867: Dshi_0867 - amidohydrolase 2 (RefSeq), at 882,752 to 883,624
_0867
Dshi_0868: Dshi_0868 - putative peptidase (RefSeq), at 883,631 to 885,007
_0868
Position (kb) 882
883
884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 881.770 kb on + strand at 881.810 kb on - strand at 881.950 kb on + strand at 882.047 kb on - strand at 882.054 kb on - strand at 882.081 kb on + strand at 882.119 kb on + strand at 882.231 kb on + strand, within Dshi_0866 at 882.241 kb on + strand, within Dshi_0866 at 882.292 kb on - strand, within Dshi_0866 at 882.298 kb on + strand, within Dshi_0866 at 882.346 kb on - strand, within Dshi_0866 at 882.400 kb on + strand, within Dshi_0866 at 882.544 kb on + strand, within Dshi_0866 at 882.652 kb on - strand, within Dshi_0866 at 882.700 kb on - strand at 882.797 kb on + strand at 882.807 kb on - strand at 882.949 kb on + strand, within Dshi_0867 at 883.231 kb on + strand, within Dshi_0867 at 883.317 kb on + strand, within Dshi_0867 at 883.331 kb on + strand, within Dshi_0867 at 883.437 kb on + strand, within Dshi_0867 at 883.448 kb on + strand, within Dshi_0867 at 883.679 kb on + strand at 883.712 kb on + strand at 883.759 kb on + strand at 883.780 kb on + strand, within Dshi_0868 at 883.799 kb on - strand, within Dshi_0868 at 883.830 kb on - strand, within Dshi_0868 at 883.864 kb on + strand, within Dshi_0868 at 883.881 kb on + strand, within Dshi_0868 at 884.010 kb on + strand, within Dshi_0868 at 884.013 kb on - strand, within Dshi_0868 at 884.041 kb on - strand, within Dshi_0868 at 884.124 kb on - strand, within Dshi_0868 at 884.266 kb on + strand, within Dshi_0868 at 884.272 kb on - strand, within Dshi_0868 at 884.419 kb on - strand, within Dshi_0868 at 884.501 kb on - strand, within Dshi_0868 at 884.544 kb on + strand, within Dshi_0868 at 884.563 kb on - strand, within Dshi_0868
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 881,770 + -1.2 881,810 - +1.7 881,950 + +0.2 882,047 - +2.4 882,054 - -0.6 882,081 + +0.6 882,119 + -1.6 882,231 + Dshi_0866 0.25 -0.2 882,241 + Dshi_0866 0.26 -1.6 882,292 - Dshi_0866 0.33 +0.4 882,298 + Dshi_0866 0.34 -2.0 882,346 - Dshi_0866 0.41 -0.6 882,400 + Dshi_0866 0.49 -0.6 882,544 + Dshi_0866 0.70 +2.5 882,652 - Dshi_0866 0.85 +1.9 882,700 - +0.0 882,797 + -0.6 882,807 - +1.4 882,949 + Dshi_0867 0.23 -0.6 883,231 + Dshi_0867 0.55 -3.2 883,317 + Dshi_0867 0.65 -4.0 883,331 + Dshi_0867 0.66 +0.4 883,437 + Dshi_0867 0.78 -2.2 883,448 + Dshi_0867 0.80 -1.6 883,679 + -0.6 883,712 + +1.4 883,759 + +0.8 883,780 + Dshi_0868 0.11 -0.4 883,799 - Dshi_0868 0.12 -0.6 883,830 - Dshi_0868 0.14 +0.4 883,864 + Dshi_0868 0.17 -2.2 883,881 + Dshi_0868 0.18 +0.4 884,010 + Dshi_0868 0.28 -3.3 884,013 - Dshi_0868 0.28 -1.2 884,041 - Dshi_0868 0.30 -1.8 884,124 - Dshi_0868 0.36 -1.2 884,266 + Dshi_0868 0.46 -0.9 884,272 - Dshi_0868 0.47 +0.0 884,419 - Dshi_0868 0.57 -0.1 884,501 - Dshi_0868 0.63 -2.6 884,544 + Dshi_0868 0.66 -0.5 884,563 - Dshi_0868 0.68 +0.1
Or see this region's nucleotide sequence