Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0718

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0717 and Dshi_0718 are separated by 349 nucleotidesDshi_0718 and Dshi_0719 are separated by 99 nucleotidesDshi_0719 and Dshi_0720 overlap by 8 nucleotidesDshi_0720 and Dshi_0721 overlap by 4 nucleotides Dshi_0717: Dshi_0717 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 724,680 to 725,906 _0717 Dshi_0718: Dshi_0718 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 726,256 to 727,788 _0718 Dshi_0719: Dshi_0719 - hypothetical protein (RefSeq), at 727,888 to 728,286 _0719 Dshi_0720: Dshi_0720 - Endoribonuclease L-PSP (RefSeq), at 728,279 to 728,668 _0720 Dshi_0721: Dshi_0721 - hypothetical protein (RefSeq), at 728,665 to 729,036 _0721 Position (kb) 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 725.266 kb on + strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.274 kb on - strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.329 kb on + strand, within Dshi_0717at 725.341 kb on - strand, within Dshi_0717at 725.467 kb on + strand, within Dshi_0717at 725.507 kb on + strand, within Dshi_0717at 725.518 kb on - strand, within Dshi_0717at 725.597 kb on - strand, within Dshi_0717at 725.615 kb on + strand, within Dshi_0717at 725.745 kb on + strand, within Dshi_0717at 725.745 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.753 kb on - strand, within Dshi_0717at 725.848 kb on - strandat 725.863 kb on + strandat 725.871 kb on + strandat 725.908 kb on + strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.916 kb on - strandat 725.979 kb on + strandat 726.005 kb on - strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.063 kb on + strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.071 kb on - strandat 726.226 kb on - strandat 726.253 kb on - strandat 726.255 kb on + strandat 726.422 kb on - strand, within Dshi_0718at 726.459 kb on - strand, within Dshi_0718at 726.533 kb on + strand, within Dshi_0718at 726.538 kb on + strand, within Dshi_0718at 726.563 kb on + strand, within Dshi_0718at 726.691 kb on - strand, within Dshi_0718at 726.766 kb on + strand, within Dshi_0718at 726.777 kb on - strand, within Dshi_0718at 726.815 kb on + strand, within Dshi_0718at 726.825 kb on - strand, within Dshi_0718at 726.844 kb on - strand, within Dshi_0718at 726.878 kb on + strand, within Dshi_0718at 727.210 kb on - strand, within Dshi_0718at 727.230 kb on + strand, within Dshi_0718at 727.257 kb on - strand, within Dshi_0718at 727.355 kb on + strand, within Dshi_0718at 727.428 kb on + strand, within Dshi_0718at 727.428 kb on + strand, within Dshi_0718at 727.441 kb on + strand, within Dshi_0718at 727.456 kb on + strand, within Dshi_0718at 727.457 kb on - strand, within Dshi_0718at 727.467 kb on + strand, within Dshi_0718at 727.510 kb on + strand, within Dshi_0718at 727.590 kb on - strand, within Dshi_0718at 727.836 kb on - strandat 727.875 kb on - strandat 727.880 kb on - strandat 727.915 kb on + strandat 727.923 kb on + strandat 728.062 kb on + strand, within Dshi_0719at 728.226 kb on + strand, within Dshi_0719at 728.236 kb on + strand, within Dshi_0719at 728.409 kb on + strand, within Dshi_0720at 728.440 kb on + strand, within Dshi_0720at 728.562 kb on - strand, within Dshi_0720at 728.562 kb on - strand, within Dshi_0720at 728.580 kb on - strand, within Dshi_0720at 728.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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725,266 + Dshi_0717 0.48 -0.7
725,274 - Dshi_0717 0.48 +2.4
725,274 - Dshi_0717 0.48 +0.4
725,274 - Dshi_0717 0.48 +3.4
725,329 + Dshi_0717 0.53 -0.0
725,329 + Dshi_0717 0.53 -0.2
725,341 - Dshi_0717 0.54 +0.7
725,467 + Dshi_0717 0.64 -1.6
725,507 + Dshi_0717 0.67 +1.3
725,518 - Dshi_0717 0.68 -0.6
725,597 - Dshi_0717 0.75 -0.9
725,615 + Dshi_0717 0.76 -0.4
725,745 + Dshi_0717 0.87 -0.2
725,745 - Dshi_0717 0.87 -0.9
725,753 - Dshi_0717 0.87 -1.7
725,753 - Dshi_0717 0.87 +0.2
725,848 - +0.2
725,863 + +0.2
725,871 + -0.5
725,908 + -0.3
725,916 - +0.4
725,916 - +0.1
725,916 - +0.1
725,916 - +1.2
725,979 + -0.0
726,005 - +0.3
726,063 + -2.6
726,063 + -0.9
726,063 + +1.2
726,071 - -1.0
726,071 - +1.0
726,071 - -0.7
726,226 - +0.4
726,253 - +1.6
726,255 + +1.1
726,422 - Dshi_0718 0.11 +0.4
726,459 - Dshi_0718 0.13 -2.4
726,533 + Dshi_0718 0.18 -0.6
726,538 + Dshi_0718 0.18 -0.4
726,563 + Dshi_0718 0.20 -1.2
726,691 - Dshi_0718 0.28 -1.2
726,766 + Dshi_0718 0.33 +1.0
726,777 - Dshi_0718 0.34 +2.6
726,815 + Dshi_0718 0.36 -0.3
726,825 - Dshi_0718 0.37 +0.2
726,844 - Dshi_0718 0.38 -0.4
726,878 + Dshi_0718 0.41 -0.5
727,210 - Dshi_0718 0.62 +0.4
727,230 + Dshi_0718 0.64 +2.7
727,257 - Dshi_0718 0.65 -0.4
727,355 + Dshi_0718 0.72 -1.2
727,428 + Dshi_0718 0.76 -1.6
727,428 + Dshi_0718 0.76 -1.2
727,441 + Dshi_0718 0.77 -2.2
727,456 + Dshi_0718 0.78 -0.5
727,457 - Dshi_0718 0.78 -0.6
727,467 + Dshi_0718 0.79 +0.4
727,510 + Dshi_0718 0.82 -1.4
727,590 - Dshi_0718 0.87 +1.6
727,836 - +0.4
727,875 - +0.8
727,880 - -0.3
727,915 + +1.9
727,923 + -0.6
728,062 + Dshi_0719 0.44 +0.4
728,226 + Dshi_0719 0.85 +0.4
728,236 + Dshi_0719 0.87 +0.4
728,409 + Dshi_0720 0.33 +2.2
728,440 + Dshi_0720 0.41 +0.4
728,562 - Dshi_0720 0.73 -3.2
728,562 - Dshi_0720 0.73 -1.0
728,580 - Dshi_0720 0.77 -0.0
728,643 - -1.6

Or see this region's nucleotide sequence