Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0437 and Dshi_0438 overlap by 4 nucleotides Dshi_0438 and Dshi_0439 overlap by 10 nucleotides Dshi_0439 and Dshi_0440 overlap by 4 nucleotides Dshi_0440 and Dshi_0441 are separated by 4 nucleotides Dshi_0441 and Dshi_0442 overlap by 11 nucleotides
Dshi_0437: Dshi_0437 - F0F1-ATPase subunit, putative (RefSeq), at 428,909 to 429,196
_0437
Dshi_0438: Dshi_0438 - hypothetical protein (RefSeq), at 429,193 to 429,498
_0438
Dshi_0439: Dshi_0439 - ATP synthase F0, A subunit (RefSeq), at 429,489 to 430,178
_0439
Dshi_0440: Dshi_0440 - ATP synthase F0, C subunit (RefSeq), at 430,175 to 430,465
_0440
Dshi_0441: Dshi_0441 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 430,470 to 431,237
_0441
Dshi_0442: Dshi_0442 - ATP synthase F1, alpha subunit (RefSeq), at 431,227 to 432,756
_0442
Position (kb) 430
431 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 429.183 kb on - strand at 429.273 kb on + strand, within Dshi_0438 at 429.281 kb on - strand, within Dshi_0438 at 429.330 kb on + strand, within Dshi_0438 at 429.332 kb on + strand, within Dshi_0438 at 429.342 kb on + strand, within Dshi_0438 at 429.411 kb on - strand, within Dshi_0438 at 429.492 kb on + strand at 429.533 kb on - strand at 429.587 kb on - strand, within Dshi_0439 at 429.607 kb on + strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.615 kb on - strand, within Dshi_0439 at 429.652 kb on + strand, within Dshi_0439 at 429.749 kb on + strand, within Dshi_0439 at 429.760 kb on + strand, within Dshi_0439 at 429.775 kb on + strand, within Dshi_0439 at 429.778 kb on - strand, within Dshi_0439 at 429.787 kb on + strand, within Dshi_0439 at 429.810 kb on + strand, within Dshi_0439 at 429.882 kb on - strand, within Dshi_0439 at 429.904 kb on + strand, within Dshi_0439 at 430.025 kb on + strand, within Dshi_0439 at 430.064 kb on - strand, within Dshi_0439 at 430.228 kb on - strand, within Dshi_0440 at 430.256 kb on - strand, within Dshi_0440 at 430.358 kb on + strand, within Dshi_0440 at 430.460 kb on + strand at 430.460 kb on + strand at 430.468 kb on - strand at 430.483 kb on + strand at 430.552 kb on + strand, within Dshi_0441 at 430.560 kb on - strand, within Dshi_0441 at 430.573 kb on + strand, within Dshi_0441 at 430.610 kb on + strand, within Dshi_0441 at 430.668 kb on + strand, within Dshi_0441 at 430.673 kb on + strand, within Dshi_0441 at 431.089 kb on - strand, within Dshi_0441 at 431.110 kb on - strand, within Dshi_0441 at 431.143 kb on + strand, within Dshi_0441 at 431.159 kb on - strand, within Dshi_0441 at 431.190 kb on - strand at 431.230 kb on + strand at 431.300 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 429,183 - -0.4 429,273 + Dshi_0438 0.26 -1.1 429,281 - Dshi_0438 0.29 -2.4 429,330 + Dshi_0438 0.45 -1.0 429,332 + Dshi_0438 0.45 -0.4 429,342 + Dshi_0438 0.49 -1.2 429,411 - Dshi_0438 0.71 -0.4 429,492 + -2.1 429,533 - +0.5 429,587 - Dshi_0439 0.14 -2.1 429,607 + Dshi_0439 0.17 +0.9 429,615 - Dshi_0439 0.18 -0.6 429,615 - Dshi_0439 0.18 -3.5 429,615 - Dshi_0439 0.18 -1.8 429,615 - Dshi_0439 0.18 -0.8 429,652 + Dshi_0439 0.24 -1.6 429,749 + Dshi_0439 0.38 -0.8 429,760 + Dshi_0439 0.39 +0.8 429,775 + Dshi_0439 0.41 -0.8 429,778 - Dshi_0439 0.42 -1.3 429,787 + Dshi_0439 0.43 -1.7 429,810 + Dshi_0439 0.47 -0.5 429,882 - Dshi_0439 0.57 +0.6 429,904 + Dshi_0439 0.60 -1.1 430,025 + Dshi_0439 0.78 +0.2 430,064 - Dshi_0439 0.83 -0.8 430,228 - Dshi_0440 0.18 +0.2 430,256 - Dshi_0440 0.28 +1.5 430,358 + Dshi_0440 0.63 +0.2 430,460 + +0.2 430,460 + +0.2 430,468 - -2.1 430,483 + +2.4 430,552 + Dshi_0441 0.11 -1.4 430,560 - Dshi_0441 0.12 -0.8 430,573 + Dshi_0441 0.13 +1.2 430,610 + Dshi_0441 0.18 -0.8 430,668 + Dshi_0441 0.26 +1.2 430,673 + Dshi_0441 0.26 -1.1 431,089 - Dshi_0441 0.81 +0.2 431,110 - Dshi_0441 0.83 -0.8 431,143 + Dshi_0441 0.88 +0.2 431,159 - Dshi_0441 0.90 -2.1 431,190 - -0.0 431,230 + -0.3 431,300 + -3.8
Or see this region's nucleotide sequence