Strain Fitness in Shewanella oneidensis MR-1 around SOA0108

Experiment: M2 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M2 center
87,778	+				+1.9
87,784	+				+1.3
87,785	+				+1.2
87,800	+				+0.9
87,800	+				-1.2
87,800	+				-0.6
87,800	+				+0.4
87,808	-				-1.8
87,808	-				-0.6
87,810	+				+1.6
87,818	-				+0.6
87,818	-				+0.5
87,851	+				+1.4
87,876	+				-0.5
87,876	+				+1.1
87,884	-				-1.1
87,884	-				+1.6
87,884	-				+0.6
87,884	-				-0.4
87,896	+				+3.0
87,896	+				+2.0
87,896	+				+1.2
87,896	+				+0.6
87,904	-				-0.0
87,904	-				-0.1
87,904	-				+0.6
87,904	-				+0.3
87,904	-				+1.0
87,904	-				-0.9
87,908	+				-2.4
87,916	+				-1.0
87,921	+				+1.1
87,923	+				+1.7
87,923	+				-1.9
87,928	+				+1.6
87,929	+				+0.1
87,929	+				-0.0
87,929	-				+0.2
87,931	+				+1.5
87,931	-				+1.1
87,936	-				+1.3
87,936	-				-0.3
87,937	+				+2.5
87,937	-				-0.4
87,937	-				+1.6
87,937	-				+1.1
87,944	+				+1.8
87,944	+				-0.2
87,944	+				-0.3
87,944	+				+0.4
87,944	+				+1.8
87,944	+				+1.4
87,944	+				+0.6
87,944	+				+1.8
87,944	+				+0.9
87,944	+				+0.5
87,944	+				-0.1
87,944	+				+2.4
87,944	+				-1.9
87,944	+				+1.8
87,944	+				+1.4
87,944	+				+0.3
87,944	+				+2.7
87,944	+				+1.9
87,944	+				+0.7
87,944	+				-3.2
87,944	+				+1.2
87,944	+				+1.5
87,944	+				+2.8
87,945	-				-4.6
87,947	+				+0.5
87,952	-				+1.6
87,952	-				-0.4
87,952	-				+2.5
87,952	-				-0.2
87,952	-				+0.1
87,952	-				+0.1
87,952	-				-0.5
87,952	-				+0.6
87,952	-				-2.2
87,952	-				+1.8
87,952	-				-0.7
87,952	-				-1.6
87,952	-				-0.0
87,956	-				-1.2
87,975	+				+1.7
87,983	+				+2.2
87,984	+				+2.9
87,984	+				+2.9
87,984	+				+1.7
87,984	+				+1.2
87,984	+				+2.5
87,989	+				+3.0
87,992	-				+0.8
87,992	-				+0.8
87,992	-				-0.6
87,992	-				-0.5
87,992	-				-0.7
87,992	-				+1.1
87,992	-				-0.1
87,992	-				+1.0
87,992	-				-0.3
87,992	-				+0.6
87,994	+				+3.1
87,994	+				+2.0
87,996	-				+0.3
87,999	+				+0.6
88,002	-				-0.5
88,002	-				-3.0
88,002	-				+0.1
88,002	-				-0.7
88,004	+				+2.5
88,007	+				+2.3
88,007	-				-0.5
88,010	-				-2.4
88,012	-				+2.1
88,017	-				-2.2
88,018	-				-3.3
88,021	-				+0.1
88,029	+				+3.9
88,029	+				+2.5
88,036	+				+2.8
88,037	+				-1.0
88,037	+				+0.4
88,037	+				+2.7
88,037	+				+2.5
88,039	-				-2.4
88,044	-				+0.1
88,045	-				+0.3
88,047	+				+0.9
88,047	+				+2.8
88,047	+				+2.9
88,055	-				+0.5
88,055	-				-2.0
88,055	-				-0.2
88,055	-				-0.0
88,069	+				+2.9
88,069	+				+1.1
88,077	-				+0.2
88,077	-				-2.7
88,077	-				+0.2
88,077	-				+0.1
88,103	+				+1.5
88,111	+				+3.2
88,111	+				+5.7
88,111	+				-1.2
88,111	+				+3.1
88,111	+				+2.6
88,111	+				+3.3
88,111	-				+0.6
88,111	-				-0.4
88,119	-				+2.1
88,133	+				+1.8
88,144	+				+2.9
88,161	+				+2.7
88,161	+				+0.8
88,161	+				+3.6
88,162	+				+2.1
88,162	+				+2.2
88,162	+				+2.8
88,162	+				+2.7
88,162	+				-0.3
88,162	+				+2.5
88,168	+				+2.8
88,169	-				+0.4
88,169	-				-0.2
88,170	-				-0.3
88,170	-				+0.9
88,171	+				+1.6
88,171	+				+3.3
88,176	+				+2.9
88,176	+				+2.1
88,176	+				+2.4
88,176	+				+2.5
88,176	+				+2.2
88,176	-				-1.6
88,179	-				+3.7
88,179	-				-1.2
88,179	-				-0.7
88,179	-				-0.3
88,179	-				+1.1
88,179	-				-0.5
88,179	-				-0.1
88,179	-				-1.3
88,181	+				+1.9
88,181	+				+3.3
88,181	+				+2.9
88,181	+				+1.7
88,181	+				+3.0
88,181	+				+3.3
88,181	+				-1.2
88,181	+				+1.3
88,181	+				+2.5
88,181	+				+3.4
88,181	+				-2.2
88,181	+				+0.8
88,181	+				+3.9
88,181	+				+4.1
88,181	+				+4.0
88,181	+				+2.8
88,181	+				+4.7
88,181	+				+2.0
88,181	+				+3.0
88,181	+				+3.2
88,181	+				+3.5
88,181	+				+3.5
88,181	+				+2.8
88,181	+				+2.0
88,181	+				+3.0
88,181	+				-1.4
88,181	+				+2.8
88,181	+				+3.5
88,181	+				+2.5
88,181	+				+2.8
88,181	+				-0.3
88,181	+				+3.3
88,181	+				+2.4
88,181	+				+3.3
88,181	+				+2.3
88,181	+				-2.2
88,181	+				+2.2
88,181	+				+3.1
88,181	+				-2.7
88,181	+				+4.7
88,181	+				+2.8
88,181	+				+2.6
88,181	+				+3.5
88,181	+				-1.9
88,181	+				+3.3
88,181	+				+2.3
88,181	+				+3.5
88,181	+				+2.1
88,181	+				+3.5
88,181	+				+4.5
88,181	+				+2.2
88,181	+				+2.7
88,181	+				+4.3
88,188	-				+0.4
88,189	+				+1.7
88,189	-				-0.9
88,189	-				+0.4
88,189	-				+0.2
88,189	-				-0.2
88,189	-				-1.8
88,189	-				+1.5
88,189	-				-2.2
88,189	-				-0.7
88,189	-				-0.3
88,189	-				-0.1
88,189	-				+0.4
88,189	-				-2.0
88,189	-				+0.1
88,189	-				-0.2
88,189	-				+0.9
88,189	-				-0.6
88,189	-				-0.9
88,189	-				+0.1
88,189	-				-2.8
88,189	-				-1.7
88,189	-				+0.1
88,189	-				+0.3
88,189	-				-1.4
88,189	-				-0.1
88,189	-				+0.5
88,189	-				-0.1
88,189	-				+1.2
88,189	-				-0.6
88,189	-				-0.6
88,189	-				+1.3
88,189	-				-1.4
88,189	-				-0.4
88,189	-				+1.4
88,189	-				-1.0
88,189	-				+1.4
88,189	-				-0.4
88,189	-				-0.4
88,189	-				+0.6
88,189	-				+1.7
88,189	-				-0.3
88,189	-				-1.6
88,189	-				-0.1
88,189	-				-0.2
88,189	-				+0.2
88,189	-				+1.2
88,189	-				-0.9
88,189	-				+0.0
88,189	-				-0.4
88,189	-				-0.8
88,189	-				+0.9
88,189	-				-1.9
88,189	-				-1.2
88,189	-				-2.3
88,189	-				-0.2
88,189	-				-2.2
88,189	-				+0.3
88,189	-				+0.9
88,189	-				+0.6
88,189	-				+2.0
88,189	-				-0.4
88,198	-				-1.6
88,201	+				+1.3
88,209	-				+0.7
88,291	-				+0.4
88,303	+				+3.0
88,311	-				-0.2
88,318	+				+5.5
88,318	+				+6.4
88,318	+				+5.8
88,318	+				+4.4
88,326	-				+5.4
88,326	-				+8.3
88,326	-				+8.5
88,328	+				+2.8
88,340	+				+4.3
88,348	-				-1.7
88,350	+				+1.4
88,350	+				+2.3
88,350	+				+2.2
88,350	+				+2.8
88,350	+				+1.5
88,350	+				+4.2
88,350	+				+4.1
88,350	+				+1.7
88,350	+				+3.5
88,357	+				+5.4
88,358	-				-1.8
88,358	-				-1.2
88,358	-				-0.3
88,358	-				-2.3
88,358	-				-1.5
88,358	-				-0.3
88,358	-				-0.9
88,358	-				+1.0
88,358	-				-0.1
88,358	-				-1.1
88,358	-				-3.2
88,358	-				-0.2
88,358	-				+0.1
88,358	-				+0.0
88,358	-				+0.0
88,358	-				-2.9
88,358	-				-0.5
88,358	-				-0.3
88,358	-				-2.5
88,358	-				+1.6
88,358	-				+0.9
88,358	-				-2.6
88,358	-				-1.4
88,365	-				-3.4
88,403	+				-1.4
88,408	+				-2.2
88,411	+				-2.0
88,411	+				+2.0
88,414	+				+2.8
88,422	+				+1.8
88,422	-				-2.8
88,422	-				-0.9
88,422	-				-1.2
88,422	-				-0.1
88,424	+				+1.0
88,429	-				+0.6
88,429	-				-2.2
88,429	-				+2.5
88,430	-				-1.1
88,432	+				+2.4
88,432	-				-1.9
88,432	-				+1.5
88,440	-				+1.3
88,442	+				+5.3
88,442	+				+2.5
88,449	-				+1.4
88,465	-				-0.7
88,466	-				+1.1
88,466	-				-0.8
88,481	+				+3.3
88,481	+				+2.8
88,481	+				+2.7
88,483	+				+2.6
88,483	+				+2.1
88,483	+				+1.5
88,483	+				+1.5
88,483	+				-0.1
88,483	+				+3.4
88,483	+				+4.2
88,489	-				+0.9
88,491	-				+1.2
88,491	-				+0.7
88,491	-				-0.0
88,491	-				+0.7
88,491	-				+0.0
88,491	-				+0.3
88,491	-				-1.2
88,491	-				-2.3
88,491	-				-1.0
88,492	+				+1.9
88,492	+				+3.7
88,492	+				+5.8
88,492	+				+2.2
88,492	+				+4.1
88,492	+				+4.3
88,492	+				+3.7
88,492	+				+4.4
88,492	+				+2.5
88,492	+				+3.1
88,492	+				+1.5
88,499	+				+3.8
88,499	+				+3.5
88,500	+				+2.6
88,500	+				+3.5
88,500	+				+3.1
88,500	-				+0.5
88,500	-				-1.5
88,500	-				-2.0
88,500	-				-0.7
88,502	+				-2.8
88,502	+				+5.0
88,502	+				+3.7
88,502	+				+2.5
88,502	+				+3.1
88,502	+				+2.2
88,502	+				+3.0
88,502	+				+2.0
88,502	+				+3.0
88,502	+				-0.0
88,502	+				-3.9
88,502	+				+3.4
88,502	+				+4.0
88,502	+				+4.4
88,502	+				-4.1
88,502	+				-0.9
88,502	+				+1.0
88,502	+				+2.1
88,502	+				+3.3
88,502	+				+3.5
88,502	+				+2.4
88,502	+				+4.2
88,502	+				+4.5
88,502	+				+4.2
88,502	+				+2.3
88,502	+				+4.3
88,502	+				+3.5
88,502	+				+3.6
88,502	+				+3.2
88,502	+				+1.0
88,502	+				+3.3
88,502	+				+2.8
88,502	+				+5.1
88,502	+				+3.1
88,502	+				+2.9
88,502	+				+2.4
88,502	+				+4.2
88,502	+				+3.7
88,502	+				+4.2
88,502	+				+1.9
88,502	+				+1.6
88,502	+				+2.5
88,502	+				+3.1
88,502	+				+3.3
88,502	+				+3.4
88,502	+				+2.7
88,502	+				+2.1
88,502	+				+4.1
88,502	+				+5.1
88,502	+				+2.5
88,502	+				+3.2
88,502	+				+1.7
88,502	+				+3.5
88,502	+				+3.5
88,502	+				-1.2
88,502	+				+2.6
88,502	+				+4.2
88,502	+				+0.5
88,502	+				+2.8
88,502	+				+4.8
88,502	+				+2.9
88,502	+				+4.9
88,502	+				+4.6
88,504	+				+2.1
88,504	+				+2.7
88,504	+				+1.8
88,504	+				+1.1
88,504	+				+3.9
88,504	+				+2.7
88,504	+				+2.4
88,504	+				+2.5
88,504	+				+2.5
88,504	+				+3.1
88,504	+				+3.5
88,504	+				+3.4
88,504	+				+2.8
88,504	+				+1.9
88,507	-				-0.4
88,508	-				+1.1
88,508	-				-1.7
88,508	-				-2.0
88,508	-				+0.2
88,508	-				-0.8
88,508	-				-1.9
88,508	-				+0.1
88,508	-				+0.6
88,510	-				-0.2
88,510	-				-1.2
88,510	-				+0.2
88,510	-				-2.1
88,510	-				+0.3
88,510	-				-0.0
88,510	-				-2.3
88,510	-				-2.3
88,510	-				-0.9
88,510	-				-3.3
88,510	-				-1.5
88,510	-				+0.1
88,510	-				-0.1
88,510	-				+0.1
88,510	-				-0.8
88,510	-				+1.2
88,510	-				-3.1
88,510	-				+1.7
88,510	-				-1.5
88,510	-				-1.2
88,510	-				-1.8
88,510	-				-0.6
88,510	-				-1.9
88,510	-				-2.2
88,510	-				+1.1
88,510	-				+0.3
88,510	-				+1.3
88,510	-				-1.5
88,510	-				-1.7
88,510	-				-2.4
88,510	-				+0.9
88,510	-				-0.2
88,510	-				+0.0
88,510	-				+0.0
88,510	-				-2.6
88,510	-				+0.3
88,510	-				-2.5
88,510	-				-4.1
88,510	-				+1.0
88,510	-				+0.2
88,510	-				+1.0
88,510	-				+0.2
88,510	-				+0.7
88,510	-				-1.4
88,510	-				+1.9
88,510	-				+0.3
88,510	-				-3.1
88,510	-				-1.2
88,510	-				+0.2
88,510	-				-0.3
88,510	-				-1.7
88,510	-				-0.5
88,510	-				+0.6
88,510	-				-3.2
88,510	-				-0.8
88,510	-				-0.9
88,510	-				+0.6
88,510	-				-0.1
88,510	-				-2.3
88,510	-				-1.7
88,510	-				-2.9
88,510	-				-0.1
88,510	-				-0.3
88,510	-				-1.7
88,510	-				+0.9
88,510	-				+0.1
88,510	-				+0.5
88,510	-				+0.4
88,510	-				+1.9
88,510	-				+0.1
88,510	-				+0.5
88,510	-				+0.4
88,510	-				+1.1
88,510	-				-2.8
88,510	-				-0.3
88,510	-				-2.9
88,510	-				-1.8
88,510	-				-1.7
88,510	-				+0.0
88,510	-				+1.6
88,510	-				-1.6
88,510	-				+1.3
88,510	-				-0.7
88,510	-				+1.1
88,510	-				+0.1
88,510	-				-1.0
88,510	-				-1.9
88,511	+				+3.5
88,511	+				+3.1
88,511	+				+2.7
88,511	+				+3.8
88,511	+				+2.7
88,511	+				+1.4
88,511	-				+0.5
88,511	-				-0.1
88,511	-				-2.9
88,511	-				-0.8
88,511	-				+0.4
88,511	-				+0.7
88,511	-				-0.0
88,511	-				+0.4
88,511	-				-2.8
88,511	-				-1.7
88,512	-				+0.1
88,512	-				-0.7
88,512	-				-1.5
88,512	-				-1.9
88,512	-				-0.1
88,512	-				-0.6
88,512	-				-2.7
88,512	-				-2.6
88,519	-				-2.8
88,519	-				-2.6
88,519	-				-0.3
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88,519	-				+1.3
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88,519	-				+0.5
88,519	-				+1.1
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88,519	-				-3.3
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88,519	-				-1.6
88,519	-				+1.6
88,519	-				-1.6
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88,521	+				+3.9
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88,522	+				+3.9
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88,824	+		SOA0108	0.16	+3.1
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88,824	+		SOA0108	0.16	+3.1
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88,829	+		SOA0108	0.17	+3.0
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88,832	-		SOA0108	0.18	-3.2
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88,837	-		SOA0108	0.19	-2.7
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88,839	-		SOA0108	0.20	+1.3
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88,839	-		SOA0108	0.20	+1.0
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88,839	-		SOA0108	0.20	-0.3
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88,910	+		SOA0108	0.38	+5.3
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88,916	-		SOA0108	0.40	-2.2
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88,918	-		SOA0108	0.40	+2.3
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88,921	-		SOA0108	0.41	+1.1
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88,931	+		SOA0108	0.44	+4.1
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88,939	-		SOA0108	0.46	-2.6
88,939	-		SOA0108	0.46	+0.1
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88,942	+		SOA0108	0.47	+3.1
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88,980	+		SOA0108	0.56	+6.0
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88,980	+		SOA0108	0.56	+5.8
88,980	+		SOA0108	0.56	+5.3
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88,988	-		SOA0108	0.58	+0.1
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88,988	-		SOA0108	0.58	-1.1
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89,005	-		SOA0108	0.63	-0.3
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89,018	-		SOA0108	0.66	+1.1
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89,018	-		SOA0108	0.66	-2.3
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89,021	+		SOA0108	0.67	+3.4
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89,021	+		SOA0108	0.67	+6.6
89,021	+		SOA0108	0.67	+4.1
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89,021	+		SOA0108	0.67	+3.3
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89,021	+		SOA0108	0.67	+2.5
89,021	+		SOA0108	0.67	+7.6
89,021	+		SOA0108	0.67	+4.2
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89,029	-		SOA0108	0.69	-0.8
89,029	-		SOA0108	0.69	-2.0
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89,029	-		SOA0108	0.69	-1.2
89,029	-		SOA0108	0.69	-1.1
89,029	-		SOA0108	0.69	+1.2
89,029	-		SOA0108	0.69	-1.6
89,029	-		SOA0108	0.69	-1.8
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89,034	+		SOA0108	0.70	+6.0
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89,036	+		SOA0108	0.71	+3.9
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89,059	+		SOA0108	0.77	+5.2
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89,100	-		SOA0108	0.87	+1.1
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89,101	-		SOA0108	0.88	-1.7
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89,114	+				+4.0
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89,114	+				+2.6
89,114	+				+5.5
89,114	+				+3.3
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89,114	+				+4.6
89,114	+				+7.6
89,114	+				+4.1
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89,121	+				-2.3
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89,122	+				+3.8
89,122	+				+4.8
89,122	+				+5.1
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89,122	-				+0.5
89,122	-				-1.3
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89,122	-				-4.0
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89,122	-				+0.9
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89,130	-				+1.8
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89,133	+				+5.3
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89,348	-		SOA0109	0.24	-1.4
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89,441	+		SOA0109	0.37	-3.0
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89,441	+		SOA0109	0.37	-0.3
89,441	+		SOA0109	0.37	-1.1
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89,441	+		SOA0109	0.37	-3.0
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89,441	+		SOA0109	0.37	-2.3
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89,516	-		SOA0109	0.47	+2.1
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89,518	-		SOA0109	0.48	-3.3
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89,542	+		SOA0109	0.51	-1.3
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89,550	-		SOA0109	0.52	+0.1
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89,587	+		SOA0109	0.57	-1.9
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89,587	+		SOA0109	0.57	-4.0
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89,595	-		SOA0109	0.58	+0.1
89,595	-		SOA0109	0.58	-0.4
89,595	-		SOA0109	0.58	+1.3
89,595	-		SOA0109	0.58	-0.8
89,595	-		SOA0109	0.58	-0.7
89,595	-		SOA0109	0.58	-1.3
89,599	+		SOA0109	0.59	-1.4
89,599	+		SOA0109	0.59	-1.3
89,607	-		SOA0109	0.60	-1.7
89,612	+		SOA0109	0.60	-2.1
89,674	-		SOA0109	0.69	-0.8
89,746	+		SOA0109	0.79	-1.5
89,756	+		SOA0109	0.80	-3.5
89,756	+		SOA0109	0.80	-1.7
89,756	+		SOA0109	0.80	-0.8
89,756	+		SOA0109	0.80	-1.3
89,756	-		SOA0109	0.80	-2.4
89,764	-		SOA0109	0.81	-1.8
89,764	-		SOA0109	0.81	-1.1
89,814	+		SOA0109	0.88	-2.2
89,814	+		SOA0109	0.88	+0.6
89,814	+		SOA0109	0.88	-1.0
89,814	+		SOA0109	0.88	-2.2
89,814	+		SOA0109	0.88	-1.1
89,814	+		SOA0109	0.88	-2.7
89,814	+		SOA0109	0.88	-0.5
89,831	-				-3.8
89,855	+				+0.2
89,857	+				-3.0
89,857	+				-1.2
89,865	-				-0.8
89,865	-				-1.0
89,865	-				+1.1
89,865	-				-1.7
89,865	-				+0.3
89,867	+				-0.8
89,872	+				-0.8
89,872	+				-1.0
89,875	-				-0.8
89,875	-				+0.2
89,875	-				-0.2
89,877	+				-3.2
89,878	-				+0.7
89,880	-				-2.0
89,881	+				-1.0
89,881	+				-4.0
89,881	+				-4.4
89,881	+				-1.1
89,881	+				-1.5
89,881	+				-2.2
89,881	+				-2.1
89,881	+				-0.2
89,881	+				-0.3
89,881	+				+1.3
89,881	+				-1.4
89,881	+				-1.7
89,881	+				-2.9
89,881	+				+0.2
89,881	+				-1.8
89,881	+				-3.6
89,881	+				-1.0
89,885	-				-1.4
89,889	-				-2.0
89,889	-				+1.0
89,889	-				-0.0
89,889	-				-1.0
89,889	-				+0.6
89,889	-				-1.9
89,889	-				-2.2
89,889	-				+0.1
89,889	-				+0.6
89,889	-				-0.5
89,889	-				-1.8
89,889	-				+1.6
89,889	-				-1.1
89,889	-				-0.1
89,911	+				-2.4
89,911	+				-1.8
89,911	+				-0.7
89,911	+				-0.8
89,911	+				+1.0
89,911	+				+0.4
89,919	-				-3.8
89,919	-				-2.6
89,919	-				-3.8
89,926	+				-1.3
89,931	+				-0.5
89,934	-				-1.0
89,934	-				-1.7
89,938	+				-1.4
89,938	+				-1.0
89,946	-				-0.4
89,946	-				+0.1
89,946	-				-1.7
89,949	+				-3.2
89,951	-				+1.6
89,973	+				-1.2
89,984	-				-2.0
90,017	-				-0.7
90,099	+				+1.1
90,101	+				-2.9
90,107	-				+1.9
90,127	+				-1.7