Strain Fitness in Shewanella oneidensis MR-1 around SOA0106

Experiment: M2 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M2 center
84,338	-		SOA0104	0.68	-0.7
84,341	-		SOA0104	0.71	-1.3
84,362	+		SOA0104	0.87	+0.3
84,372	+				-2.4
84,380	-				+0.9
84,380	-				-0.0
84,380	-				-0.3
84,380	-				-0.6
84,380	-				-0.4
84,411	-				+1.1
84,413	+				+0.6
85,212	+				-2.5
85,240	-				+3.3
85,250	+				-1.4
85,267	+				-5.2
85,338	+				-0.4
85,404	+				+4.3
85,432	+				+4.4
85,442	-				+3.0
85,509	-		SOA0106	0.11	+2.9
85,514	-		SOA0106	0.12	-0.6
85,519	-		SOA0106	0.12	+4.0
85,538	+		SOA0106	0.13	+2.9
85,553	-		SOA0106	0.14	+2.5
85,682	+		SOA0106	0.22	+3.1
85,682	+		SOA0106	0.22	+3.0
85,722	-		SOA0106	0.24	+4.2
85,741	+		SOA0106	0.25	+3.6
85,758	-		SOA0106	0.26	+4.1
85,794	+		SOA0106	0.29	+3.0
85,794	+		SOA0106	0.29	+4.2
85,795	+		SOA0106	0.29	+3.1
85,795	+		SOA0106	0.29	+4.6
85,796	+		SOA0106	0.29	+5.0
85,796	+		SOA0106	0.29	+4.3
85,796	+		SOA0106	0.29	+4.0
85,804	-		SOA0106	0.29	+1.1
85,804	-		SOA0106	0.29	+1.8
85,804	-		SOA0106	0.29	+3.2
85,804	-		SOA0106	0.29	+4.2
85,818	-		SOA0106	0.30	+2.1
85,852	+		SOA0106	0.32	+3.7
85,852	+		SOA0106	0.32	+3.5
85,852	+		SOA0106	0.32	+4.6
85,852	+		SOA0106	0.32	+0.4
85,852	+		SOA0106	0.32	+1.3
85,852	+		SOA0106	0.32	+4.5
85,852	+		SOA0106	0.32	+3.6
85,852	+		SOA0106	0.32	+4.3
85,852	+		SOA0106	0.32	+4.1
85,852	+		SOA0106	0.32	+2.5
85,852	+		SOA0106	0.32	+0.2
85,857	+		SOA0106	0.32	+2.4
85,858	-		SOA0106	0.33	+4.4
85,860	-		SOA0106	0.33	+3.0
85,860	-		SOA0106	0.33	+2.7
85,860	-		SOA0106	0.33	+4.1
85,860	-		SOA0106	0.33	+2.0
85,860	-		SOA0106	0.33	+4.8
85,860	-		SOA0106	0.33	+4.8
85,860	-		SOA0106	0.33	-1.9
85,864	+		SOA0106	0.33	+2.3
85,864	+		SOA0106	0.33	+0.9
85,864	+		SOA0106	0.33	+4.1
85,864	+		SOA0106	0.33	+3.8
85,864	+		SOA0106	0.33	+3.8
85,864	+		SOA0106	0.33	+0.6
85,864	+		SOA0106	0.33	+3.5
85,864	+		SOA0106	0.33	+3.4
85,865	-		SOA0106	0.33	+4.0
85,872	-		SOA0106	0.33	+4.9
85,872	-		SOA0106	0.33	+5.2
85,872	-		SOA0106	0.33	-2.6
85,907	+		SOA0106	0.36	+3.7
85,907	+		SOA0106	0.36	+2.2
85,907	+		SOA0106	0.36	+4.1
85,907	+		SOA0106	0.36	+3.8
85,907	+		SOA0106	0.36	+4.0
85,907	+		SOA0106	0.36	+6.9
85,907	+		SOA0106	0.36	+2.4
85,907	+		SOA0106	0.36	+3.8
85,915	-		SOA0106	0.36	+3.5
85,915	-		SOA0106	0.36	+3.7
85,915	-		SOA0106	0.36	+4.8
85,915	-		SOA0106	0.36	+2.4
85,915	-		SOA0106	0.36	+4.4
85,952	-		SOA0106	0.38	+3.5
85,980	-		SOA0106	0.40	+3.4
86,014	-		SOA0106	0.42	+2.6
86,028	-		SOA0106	0.43	+2.4
86,028	-		SOA0106	0.43	+4.3
86,040	+		SOA0106	0.44	+0.6
86,053	-		SOA0106	0.44	+3.9
86,090	+		SOA0106	0.47	+2.7
86,098	-		SOA0106	0.47	+3.9
86,109	-		SOA0106	0.48	+3.2
86,142	-		SOA0106	0.50	+5.4
86,149	+		SOA0106	0.50	+1.0
86,154	+		SOA0106	0.51	+3.5
86,162	-		SOA0106	0.51	+5.1
86,162	-		SOA0106	0.51	+4.3
86,167	+		SOA0106	0.51	+3.8
86,170	+		SOA0106	0.52	-2.0
86,170	+		SOA0106	0.52	+4.1
86,229	+		SOA0106	0.55	+1.3
86,238	+		SOA0106	0.56	+4.1
86,260	+		SOA0106	0.57	+3.1
86,272	+		SOA0106	0.58	+3.6
86,272	+		SOA0106	0.58	+3.7
86,272	+		SOA0106	0.58	+2.2
86,272	+		SOA0106	0.58	-2.1
86,272	+		SOA0106	0.58	-2.0
86,272	+		SOA0106	0.58	+4.0
86,272	+		SOA0106	0.58	+3.3
86,272	+		SOA0106	0.58	+3.2
86,272	+		SOA0106	0.58	+6.3
86,272	+		SOA0106	0.58	+3.9
86,277	-		SOA0106	0.58	-1.2
86,280	-		SOA0106	0.58	+4.5
86,280	-		SOA0106	0.58	+2.2
86,280	-		SOA0106	0.58	+2.5
86,280	-		SOA0106	0.58	+4.6
86,280	-		SOA0106	0.58	+3.0
86,338	+		SOA0106	0.62	+5.2
86,338	+		SOA0106	0.62	+2.6
86,341	-		SOA0106	0.62	+2.8
86,341	-		SOA0106	0.62	+1.0
86,346	-		SOA0106	0.62	+1.9
86,346	-		SOA0106	0.62	+2.2
86,410	+		SOA0106	0.66	+6.8
86,467	-		SOA0106	0.70	+2.6
86,469	+		SOA0106	0.70	+3.0
86,517	+		SOA0106	0.73	+4.7
86,517	+		SOA0106	0.73	+4.7
86,532	-		SOA0106	0.74	+2.4
86,539	+		SOA0106	0.74	+3.3
86,544	+		SOA0106	0.74	+4.2
86,544	+		SOA0106	0.74	+3.9
86,544	+		SOA0106	0.74	+3.8
86,545	+		SOA0106	0.74	+2.5
86,545	+		SOA0106	0.74	+3.1
86,552	+		SOA0106	0.75	+3.6
86,552	+		SOA0106	0.75	+3.3
86,552	-		SOA0106	0.75	+4.0
86,552	-		SOA0106	0.75	+2.0
86,552	-		SOA0106	0.75	+5.5
86,552	-		SOA0106	0.75	+4.8
86,553	-		SOA0106	0.75	+4.3
86,553	-		SOA0106	0.75	+3.8
86,559	-		SOA0106	0.75	+3.1
86,574	+		SOA0106	0.76	+3.6
86,574	+		SOA0106	0.76	+2.5
86,574	+		SOA0106	0.76	+4.5
86,577	-		SOA0106	0.76	+1.8
86,582	-		SOA0106	0.77	+4.0
86,582	-		SOA0106	0.77	+4.6
86,585	-		SOA0106	0.77	+5.6
86,586	+		SOA0106	0.77	+2.5
86,601	+		SOA0106	0.78	-2.9
86,601	+		SOA0106	0.78	+3.7
86,601	+		SOA0106	0.78	+4.4
86,601	+		SOA0106	0.78	+2.1
86,601	+		SOA0106	0.78	+4.1
86,601	+		SOA0106	0.78	-1.4
86,601	+		SOA0106	0.78	+2.4
86,601	+		SOA0106	0.78	+3.6
86,601	+		SOA0106	0.78	+5.0
86,601	+		SOA0106	0.78	+1.9
86,609	-		SOA0106	0.78	+2.0
86,609	-		SOA0106	0.78	+0.8
86,609	-		SOA0106	0.78	+3.9
86,609	-		SOA0106	0.78	+2.5
86,609	-		SOA0106	0.78	+4.5
86,624	-		SOA0106	0.79	-1.3
86,643	+		SOA0106	0.80	+4.6
86,643	+		SOA0106	0.80	+4.0
86,644	+		SOA0106	0.80	+3.9
86,651	-		SOA0106	0.81	+4.4
86,651	-		SOA0106	0.81	+4.1
86,652	+		SOA0106	0.81	+4.4
86,656	-		SOA0106	0.81	+4.0
86,657	+		SOA0106	0.81	+3.9
86,657	-		SOA0106	0.81	+5.3
86,662	+		SOA0106	0.82	+5.1
86,666	+		SOA0106	0.82	+4.8
86,669	-		SOA0106	0.82	+2.5
86,681	+		SOA0106	0.83	+3.4
86,681	+		SOA0106	0.83	+4.4
86,681	+		SOA0106	0.83	+2.2
86,681	+		SOA0106	0.83	+5.9
86,681	+		SOA0106	0.83	+2.9
86,689	-		SOA0106	0.83	+4.4
86,689	-		SOA0106	0.83	+4.7
86,702	-		SOA0106	0.84	+1.8
86,711	+		SOA0106	0.85	+3.0
86,711	+		SOA0106	0.85	+2.9
86,712	+		SOA0106	0.85	+0.1
86,712	+		SOA0106	0.85	+3.5
86,712	+		SOA0106	0.85	+3.0
86,712	+		SOA0106	0.85	+3.7
86,712	+		SOA0106	0.85	+4.6
86,719	-		SOA0106	0.85	+3.7
86,720	-		SOA0106	0.85	+3.7
86,720	-		SOA0106	0.85	+4.1
86,720	-		SOA0106	0.85	-1.9
86,720	-		SOA0106	0.85	+3.4
86,720	-		SOA0106	0.85	+3.6
86,722	+		SOA0106	0.85	+4.6
86,723	+		SOA0106	0.85	+5.5
86,723	-		SOA0106	0.85	+4.1
86,730	-		SOA0106	0.86	-2.8
86,731	-		SOA0106	0.86	+5.1
86,731	-		SOA0106	0.86	+3.3
86,784	+		SOA0106	0.89	+0.6
86,800	+		SOA0106	0.90	+4.2
86,800	+		SOA0106	0.90	+5.2
86,800	+		SOA0106	0.90	+1.3
86,802	+				+5.1
86,803	+				+2.8
86,805	+				+0.9
86,805	+				+4.3
86,808	-				+4.6
86,812	+				+6.3
86,812	+				+3.2
86,813	-				+1.5
86,813	-				+4.9
86,813	-				+3.5
86,820	-				+1.8
86,820	-				+5.5
86,824	+				+1.5
86,824	+				+5.1
86,824	+				+5.8
86,824	+				+3.7
86,824	+				+3.0
86,824	+				+4.1
86,824	+				+2.4
86,824	+				+4.1
86,824	+				+2.3
86,826	+				+2.6
86,832	+				+3.1
86,832	-				+5.4
86,832	-				+4.2
86,832	-				+3.4
86,832	-				+3.4
86,832	-				+4.8
86,832	-				+5.0
86,832	-				+3.8
86,834	-				+3.5
86,834	-				+4.5
86,869	+				+4.2
86,876	-				+3.1
86,879	+				+4.5
86,879	+				+4.8
86,879	+				+2.6
86,879	+				+3.8
86,879	+				+5.7
86,884	+				+3.8
86,887	-				+0.9
86,891	+				+1.1
86,892	-				+2.0
86,897	-				+5.1
86,906	-				-0.4
86,908	+				+1.4
86,908	+				-1.2
86,908	+				+3.4
86,908	+				+4.8
86,915	-				+6.8
86,916	-				+4.2
86,916	-				+4.2
86,923	+				+4.1
86,929	+				+4.0
86,929	+				+2.2
86,929	+				+4.3
86,929	+				+4.0
86,931	+				+6.6
86,931	+				+3.9
86,931	+				+4.3
86,931	+				+2.2
86,931	+				+3.7
86,931	+				+3.4
86,931	+				+3.0
86,931	+				-1.2
86,931	-				+3.0
86,937	+				+3.7
86,937	+				+4.8
86,937	+				+2.2
86,937	+				+2.1
86,937	+				+4.9
86,937	+				+4.1
86,937	-				+3.9
86,937	-				+3.9
86,939	-				+3.5
86,939	-				+4.8
86,939	-				+3.9
86,939	-				+2.5
86,939	-				+4.7
86,939	-				+3.7
86,939	-				+3.6
86,939	-				+3.4
86,939	-				+2.1
86,939	-				+1.8
86,939	-				+0.9
86,939	-				+2.1
86,945	-				+3.1
86,945	-				+0.8
86,945	-				+1.8
86,945	-				+4.5
86,945	-				+4.3
86,945	-				+0.6
86,945	-				+4.6
86,945	-				+5.0
86,945	-				+3.7
86,986	+				+2.3
86,999	-				+2.3
87,004	+				+1.4
87,006	+				+1.9
87,006	+				+1.5
87,006	+				+1.2
87,006	+				+1.4
87,006	+				+0.4
87,006	+				+0.7
87,009	+				-2.0
87,009	+				+2.7
87,012	-				-0.1
87,013	-				+1.7
87,014	-				+0.1
87,014	-				+0.1
87,014	-				+1.8
87,014	-				+3.8
87,014	-				+2.0
87,014	-				+1.9
87,015	-				+2.1
87,017	-				+1.1
87,017	-				+1.0
87,017	-				+3.8
87,019	+				+2.4
87,019	+				+2.2
87,019	+				+3.1
87,021	+				+2.4
87,027	-				+0.8
87,029	-				+1.4
87,071	+				-0.1
87,073	+				+1.1
87,073	+				+2.2
87,073	+				+1.9
87,083	+				-1.3
87,083	+				-0.8
87,083	+				+0.7
87,083	+				+0.1
87,083	+				+1.0
87,083	+				-1.8
87,083	+				+0.4
87,083	+				+0.1
87,083	+				+1.6
87,085	+				-0.5
87,086	+				-2.4
87,086	+				+0.0
87,092	+				+0.0
87,094	-				+1.6
87,097	-				-2.6
87,098	+				-0.8
87,098	+				-0.1
87,098	+				+0.9
87,098	+				+1.5
87,099	+				+0.7
87,099	-				+0.5
87,099	-				-1.4
87,117	-				+1.6
87,123	-		SO_A0107	0.11	+0.7
87,128	-		SO_A0107	0.12	-0.0
87,131	+		SO_A0107	0.13	-0.2
87,139	-		SO_A0107	0.16	+1.0
87,139	-		SO_A0107	0.16	+0.7
87,189	+		SO_A0107	0.32	-0.7
87,200	+		SO_A0107	0.35	+1.2
87,200	+		SO_A0107	0.35	-0.7
87,200	+		SO_A0107	0.35	+0.9
87,200	+		SO_A0107	0.35	-1.9
87,200	+		SO_A0107	0.35	-0.3
87,208	-		SO_A0107	0.38	-1.2
87,208	-		SO_A0107	0.38	-1.1
87,214	+		SO_A0107	0.40	-2.1
87,222	-		SO_A0107	0.42	-1.0
87,224	+		SO_A0107	0.43	-0.9
87,225	+		SO_A0107	0.43	+2.0
87,233	+		SO_A0107	0.46	+0.6
87,251	+		SO_A0107	0.52	-0.9
87,256	+		SO_A0107	0.53	+1.5
87,257	-		SO_A0107	0.54	+1.6
87,259	-		SO_A0107	0.54	+0.2
87,259	-		SO_A0107	0.54	+0.8
87,259	-		SO_A0107	0.54	-0.6
87,259	-		SO_A0107	0.54	-0.0
87,259	-		SO_A0107	0.54	-2.7
87,259	-		SO_A0107	0.54	+0.8
87,263	+		SO_A0107	0.55	-1.1
87,263	+		SO_A0107	0.55	+2.6
87,263	+		SO_A0107	0.55	+0.3
87,263	+		SO_A0107	0.55	+0.1
87,263	+		SO_A0107	0.55	+0.2
87,263	+		SO_A0107	0.55	+0.6
87,263	+		SO_A0107	0.55	-1.3
87,263	+		SO_A0107	0.55	+1.1
87,264	-		SO_A0107	0.56	-3.4
87,264	-		SO_A0107	0.56	-1.9
87,271	-		SO_A0107	0.58	+0.2
87,271	-		SO_A0107	0.58	-1.0
87,271	-		SO_A0107	0.58	-1.0
87,271	-		SO_A0107	0.58	-0.8
87,271	-		SO_A0107	0.58	+1.1
87,271	-		SO_A0107	0.58	-1.1
87,271	-		SO_A0107	0.58	-0.3
87,271	-		SO_A0107	0.58	-0.1
87,276	-		SO_A0107	0.60	+0.4
87,276	-		SO_A0107	0.60	+2.6
87,281	+		SO_A0107	0.61	-0.5
87,284	-		SO_A0107	0.62	-1.8
87,289	-		SO_A0107	0.64	+1.0
87,289	-		SO_A0107	0.64	-0.3
87,299	-		SO_A0107	0.67	-0.4
87,302	+		SO_A0107	0.68	-0.7
87,308	+		SO_A0107	0.70	-2.8
87,316	+		SO_A0107	0.72	+0.6
87,321	+		SO_A0107	0.74	-0.1
87,321	+		SO_A0107	0.74	-0.9
87,329	-		SO_A0107	0.77	-3.0
87,343	-		SO_A0107	0.81	-1.3
87,343	-		SO_A0107	0.81	+1.4
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