Strain Fitness in Shewanella oneidensis MR-1 around SO4225

Experiment: M2 center

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurE and ftsI overlap by 1 nucleotidesftsI and ftsL are separated by 13 nucleotidesftsL and SO4227 are separated by 11 nucleotides SO4224: murE - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (NCBI ptt file), at 4,399,230 to 4,400,705 murE SO4225: ftsI - peptidoglycan synthetase FtsI (NCBI ptt file), at 4,400,705 to 4,402,456 ftsI SO4226: ftsL - cell division protein FtsL (NCBI ptt file), at 4,402,470 to 4,402,784 ftsL SO4227: SO4227 - conserved hypothetical protein TIGR00006 (NCBI ptt file), at 4,402,796 to 4,403,737 SO4227 Position (kb) 4400 4401 4402 4403Strain fitness (log2 ratio) -2 -1 0 1at 4400.710 kb on - strandat 4402.828 kb on - strandat 4402.828 kb on - strandat 4402.948 kb on - strand, within SO4227

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Per-strain Table

Position Strand Gene LocusTag Fraction M2 center
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4,400,710 - -2.7
4,402,828 - -1.1
4,402,828 - -1.9
4,402,948 - SO4227 0.16 -2.6

Or see this region's nucleotide sequence