Strain Fitness in Shewanella oneidensis MR-1 around SO4097

Experiment: M2 center

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmaf and mreD are separated by 2 nucleotidesmreD and mreC overlap by 1 nucleotidesmreC and mreB are separated by 44 nucleotides SO4095: maf - maf protein (NCBI ptt file), at 4,253,941 to 4,254,525 maf SO4096: mreD - rod shape-determining protein MreD (NCBI ptt file), at 4,254,528 to 4,255,016 mreD SO4097: mreC - rod shape-determining protein MreC (NCBI ptt file), at 4,255,016 to 4,256,083 mreC SO4098: mreB - rod shape-determining protein MreB (NCBI ptt file), at 4,256,128 to 4,257,177 mreB Position (kb) 4255 4256 4257Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4254.027 kb on + strand, within mafat 4254.184 kb on + strand, within mafat 4254.184 kb on + strand, within mafat 4254.192 kb on - strand, within mafat 4254.192 kb on - strand, within mafat 4254.192 kb on - strand, within mafat 4254.192 kb on - strand, within mafat 4254.195 kb on + strand, within mafat 4254.405 kb on + strand, within mafat 4254.405 kb on + strand, within mafat 4254.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M2 center
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4,254,027 + maf SO4095 0.15 -2.2
4,254,184 + maf SO4095 0.42 -1.7
4,254,184 + maf SO4095 0.42 -0.5
4,254,192 - maf SO4095 0.43 -2.8
4,254,192 - maf SO4095 0.43 -1.3
4,254,192 - maf SO4095 0.43 +0.7
4,254,192 - maf SO4095 0.43 -1.7
4,254,195 + maf SO4095 0.43 -3.4
4,254,405 + maf SO4095 0.79 -1.4
4,254,405 + maf SO4095 0.79 +3.0
4,254,544 - +0.5

Or see this region's nucleotide sequence