Strain Fitness in Shewanella oneidensis MR-1 around SO3881

Experiment: M2 center

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3880 and SO3881 are separated by 110 nucleotidesSO3881 and SO3882 are separated by 52 nucleotides SO3880: SO3880 - ISSod13, transposase (NCBI ptt file), at 4,027,300 to 4,028,340 SO3880 SO3881: SO3881 - hypothetical protein (NCBI ptt file), at 4,028,451 to 4,028,708 SO3881 SO3882: SO3882 - ISSod4, transposase (NCBI ptt file), at 4,028,761 to 4,029,963 SO3882 Position (kb) 4028 4029Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4028.464 kb on - strandat 4028.501 kb on - strand, within SO3881at 4028.552 kb on + strand, within SO3881at 4028.573 kb on - strand, within SO3881at 4028.601 kb on + strand, within SO3881at 4028.609 kb on - strand, within SO3881at 4028.619 kb on - strand, within SO3881at 4028.643 kb on - strand, within SO3881at 4028.682 kb on + strand, within SO3881at 4028.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M2 center
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4,028,464 - +3.5
4,028,501 - SO3881 0.19 +1.3
4,028,552 + SO3881 0.39 -0.8
4,028,573 - SO3881 0.47 -1.0
4,028,601 + SO3881 0.58 +0.6
4,028,609 - SO3881 0.61 -2.2
4,028,619 - SO3881 0.65 -0.8
4,028,643 - SO3881 0.74 +2.0
4,028,682 + SO3881 0.90 -0.6
4,028,718 - +0.1

Or see this region's nucleotide sequence