Strain Fitness in Shewanella oneidensis MR-1 around SO2546

Experiment: M2 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M2 center
2,679,366	-		SO2545	0.23	-0.4
2,679,366	-		SO2545	0.23	-2.2
2,679,368	+		SO2545	0.23	+0.5
2,679,376	-		SO2545	0.23	+2.4
2,679,405	+		SO2545	0.26	-0.7
2,679,410	+		SO2545	0.26	+0.5
2,679,418	+		SO2545	0.27	-1.3
2,679,421	-		SO2545	0.27	-2.0
2,679,424	-		SO2545	0.27	+1.7
2,679,424	-		SO2545	0.27	+1.0
2,679,424	-		SO2545	0.27	-0.0
2,679,424	-		SO2545	0.27	+0.2
2,679,426	-		SO2545	0.27	+0.1
2,679,509	+		SO2545	0.34	-1.4
2,679,517	-		SO2545	0.34	+1.8
2,679,519	+		SO2545	0.35	+0.7
2,679,519	+		SO2545	0.35	-1.7
2,679,539	+		SO2545	0.36	-0.1
2,679,539	-		SO2545	0.36	-0.2
2,679,541	+		SO2545	0.36	+1.2
2,679,541	+		SO2545	0.36	+0.7
2,679,541	+		SO2545	0.36	-0.1
2,679,541	+		SO2545	0.36	+0.4
2,679,552	-		SO2545	0.37	+0.4
2,679,552	-		SO2545	0.37	-0.6
2,679,576	+		SO2545	0.39	-1.0
2,679,584	-		SO2545	0.40	-1.6
2,679,592	+		SO2545	0.40	-0.2
2,679,592	+		SO2545	0.40	+1.7
2,679,599	+		SO2545	0.41	-1.5
2,679,600	-		SO2545	0.41	+0.8
2,679,600	-		SO2545	0.41	-0.1
2,679,606	-		SO2545	0.41	+0.6
2,679,607	-		SO2545	0.41	-1.7
2,679,638	-		SO2545	0.44	-0.5
2,679,659	+		SO2545	0.45	+0.0
2,679,681	+		SO2545	0.47	-0.2
2,679,688	-		SO2545	0.48	-0.1
2,679,689	-		SO2545	0.48	+0.7
2,679,689	-		SO2545	0.48	+1.5
2,679,689	-		SO2545	0.48	-0.1
2,679,689	-		SO2545	0.48	+0.9
2,679,693	+		SO2545	0.48	-0.4
2,679,696	-		SO2545	0.48	+0.6
2,679,701	-		SO2545	0.49	-0.1
2,679,739	+		SO2545	0.52	-2.3
2,679,817	+		SO2545	0.58	-0.3
2,679,817	+		SO2545	0.58	+0.4
2,679,817	+		SO2545	0.58	+1.1
2,679,823	+		SO2545	0.58	+0.1
2,679,825	-		SO2545	0.58	-1.1
2,679,827	+		SO2545	0.58	+1.5
2,679,832	+		SO2545	0.59	+2.2
2,679,837	+		SO2545	0.59	-0.0
2,679,837	+		SO2545	0.59	+0.3
2,679,837	+		SO2545	0.59	-0.8
2,679,845	-		SO2545	0.60	+0.6
2,679,845	-		SO2545	0.60	+0.7
2,679,845	-		SO2545	0.60	+1.1
2,679,845	-		SO2545	0.60	-1.1
2,679,845	-		SO2545	0.60	-1.8
2,679,845	-		SO2545	0.60	+0.8
2,679,882	-		SO2545	0.63	-0.6
2,679,882	-		SO2545	0.63	+2.6
2,679,907	+		SO2545	0.65	-0.1
2,679,907	+		SO2545	0.65	-0.2
2,679,907	+		SO2545	0.65	+1.2
2,679,907	+		SO2545	0.65	+1.9
2,679,907	+		SO2545	0.65	-0.3
2,679,907	+		SO2545	0.65	+0.1
2,679,907	+		SO2545	0.65	+1.1
2,679,907	+		SO2545	0.65	+0.2
2,679,907	+		SO2545	0.65	-0.8
2,679,907	+		SO2545	0.65	+1.0
2,679,907	+		SO2545	0.65	-1.2
2,679,907	+		SO2545	0.65	+1.9
2,679,907	+		SO2545	0.65	+0.7
2,679,907	+		SO2545	0.65	-0.0
2,679,907	+		SO2545	0.65	-0.7
2,679,907	+		SO2545	0.65	+1.1
2,679,907	+		SO2545	0.65	-1.1
2,679,907	+		SO2545	0.65	+0.8
2,679,907	+		SO2545	0.65	-0.4
2,679,907	+		SO2545	0.65	-0.5
2,679,907	+		SO2545	0.65	+0.1
2,679,907	+		SO2545	0.65	+0.9
2,679,907	+		SO2545	0.65	+0.5
2,679,907	+		SO2545	0.65	-0.5
2,679,907	+		SO2545	0.65	+0.4
2,679,907	+		SO2545	0.65	+0.4
2,679,907	+		SO2545	0.65	+0.6
2,679,907	+		SO2545	0.65	-1.4
2,679,907	+		SO2545	0.65	-2.6
2,679,907	+		SO2545	0.65	-1.5
2,679,907	+		SO2545	0.65	-0.4
2,679,907	+		SO2545	0.65	+0.7
2,679,907	+		SO2545	0.65	-0.5
2,679,907	+		SO2545	0.65	-0.8
2,679,907	+		SO2545	0.65	-2.0
2,679,907	+		SO2545	0.65	-0.8
2,679,907	+		SO2545	0.65	-0.1
2,679,907	+		SO2545	0.65	-0.7
2,679,907	+		SO2545	0.65	+1.9
2,679,907	+		SO2545	0.65	-0.4
2,679,907	+		SO2545	0.65	+0.5
2,679,907	+		SO2545	0.65	-0.1
2,679,907	+		SO2545	0.65	-0.4
2,679,907	+		SO2545	0.65	+1.0
2,679,907	+		SO2545	0.65	+1.2
2,679,907	+		SO2545	0.65	+1.0
2,679,907	+		SO2545	0.65	-0.1
2,679,914	-		SO2545	0.65	-0.8
2,679,915	-		SO2545	0.65	+0.2
2,679,915	-		SO2545	0.65	+0.5
2,679,915	-		SO2545	0.65	+0.4
2,679,915	-		SO2545	0.65	+0.7
2,679,915	-		SO2545	0.65	+0.8
2,679,915	-		SO2545	0.65	-1.5
2,679,915	-		SO2545	0.65	+1.2
2,679,915	-		SO2545	0.65	+0.9
2,679,915	-		SO2545	0.65	-1.7
2,679,915	-		SO2545	0.65	-0.9
2,679,915	-		SO2545	0.65	+0.1
2,679,915	-		SO2545	0.65	-0.6
2,679,915	-		SO2545	0.65	-0.4
2,679,915	-		SO2545	0.65	-1.5
2,679,915	-		SO2545	0.65	-0.6
2,679,915	-		SO2545	0.65	-0.5
2,679,915	-		SO2545	0.65	+0.7
2,679,915	-		SO2545	0.65	+0.7
2,679,915	-		SO2545	0.65	-1.0
2,679,915	-		SO2545	0.65	+1.9
2,679,915	-		SO2545	0.65	+0.2
2,679,915	-		SO2545	0.65	-1.7
2,679,915	-		SO2545	0.65	-1.0
2,679,915	-		SO2545	0.65	+1.3
2,679,915	-		SO2545	0.65	-0.3
2,679,915	-		SO2545	0.65	+0.8
2,679,915	-		SO2545	0.65	-1.9
2,679,915	-		SO2545	0.65	+0.1
2,679,915	-		SO2545	0.65	+0.2
2,679,915	-		SO2545	0.65	+0.2
2,679,915	-		SO2545	0.65	-1.9
2,679,915	-		SO2545	0.65	-0.6
2,679,915	-		SO2545	0.65	+0.0
2,679,915	-		SO2545	0.65	+0.2
2,679,915	-		SO2545	0.65	+0.0
2,679,915	-		SO2545	0.65	+0.7
2,679,915	-		SO2545	0.65	+1.7
2,679,915	-		SO2545	0.65	-0.2
2,679,915	-		SO2545	0.65	+0.3
2,679,915	-		SO2545	0.65	-0.5
2,679,915	-		SO2545	0.65	+1.4
2,679,915	-		SO2545	0.65	+0.5
2,679,915	-		SO2545	0.65	+0.5
2,679,915	-		SO2545	0.65	-0.7
2,679,915	-		SO2545	0.65	+1.4
2,679,915	-		SO2545	0.65	-1.8
2,679,915	-		SO2545	0.65	-1.5
2,679,915	-		SO2545	0.65	-0.1
2,679,915	-		SO2545	0.65	+0.2
2,679,915	-		SO2545	0.65	+0.3
2,679,915	-		SO2545	0.65	+0.3
2,679,915	-		SO2545	0.65	+2.4
2,679,915	-		SO2545	0.65	+0.5
2,679,915	-		SO2545	0.65	-0.6
2,679,915	-		SO2545	0.65	-1.1
2,679,915	-		SO2545	0.65	+1.3
2,679,915	-		SO2545	0.65	+0.8
2,679,915	-		SO2545	0.65	-1.2
2,679,915	-		SO2545	0.65	+1.6
2,679,915	-		SO2545	0.65	-0.2
2,679,915	-		SO2545	0.65	+0.1
2,679,915	-		SO2545	0.65	-2.4
2,679,915	-		SO2545	0.65	-0.3
2,679,915	-		SO2545	0.65	+0.7
2,679,915	-		SO2545	0.65	-1.8
2,679,922	+		SO2545	0.66	+0.3
2,679,922	+		SO2545	0.66	-0.1
2,679,926	+		SO2545	0.66	+0.8
2,679,944	-		SO2545	0.68	-1.6
2,679,975	+		SO2545	0.70	-0.6
2,679,978	+		SO2545	0.70	+0.5
2,679,984	-		SO2545	0.71	-0.4
2,679,986	-		SO2545	0.71	-1.7
2,680,001	-		SO2545	0.72	+0.9
2,680,007	+		SO2545	0.72	-0.1
2,680,007	+		SO2545	0.72	-0.5
2,680,007	+		SO2545	0.72	+0.3
2,680,023	+		SO2545	0.74	+0.3
2,680,025	+		SO2545	0.74	+1.7
2,680,025	+		SO2545	0.74	-2.2
2,680,033	-		SO2545	0.74	-0.6
2,680,069	+		SO2545	0.77	+0.8
2,680,080	+		SO2545	0.78	+0.9
2,680,085	+		SO2545	0.78	+0.1
2,680,088	-		SO2545	0.79	+2.0
2,680,110	+		SO2545	0.80	-0.1
2,680,118	-		SO2545	0.81	+0.5
2,680,118	-		SO2545	0.81	-0.4
2,680,122	-		SO2545	0.81	-0.7
2,680,127	-		SO2545	0.82	-0.4
2,680,155	+		SO2545	0.84	+0.4
2,680,177	-		SO2545	0.86	+0.6
2,680,229	+		SO2545	0.90	-0.1
2,680,229	+		SO2545	0.90	-1.9
2,680,229	+		SO2545	0.90	-1.8
2,680,235	+				-0.6
2,680,242	-				-1.5
2,680,252	-				+0.0
2,680,267	-				+0.6
2,680,277	-				+0.1
2,680,309	+				-1.8
2,680,313	-				-0.4
2,680,317	-				+0.3
2,680,317	-				-0.3
2,680,326	-				-0.6
2,680,347	+				-0.3
2,680,347	+				-0.5
2,680,354	-				+1.9
2,680,355	-				-1.9
2,680,389	+				-1.1
2,680,397	+				+0.6
2,680,397	-				+1.8
2,680,404	+				-2.0
2,680,404	+				+0.6
2,680,406	-				+0.6
2,680,406	-				+0.4
2,680,452	-		SO2546	0.15	-1.3
2,680,460	+		SO2546	0.17	+0.5
2,680,479	+		SO2546	0.20	-0.1
2,680,486	+		SO2546	0.21	-0.1
2,680,486	-		SO2546	0.21	+0.3
2,680,487	-		SO2546	0.21	+0.7
2,680,487	-		SO2546	0.21	+2.2
2,680,511	+		SO2546	0.25	-0.5
2,680,517	+		SO2546	0.27	+1.0
2,680,522	+		SO2546	0.27	+0.5
2,680,527	+		SO2546	0.28	+1.3
2,680,527	+		SO2546	0.28	-2.3
2,680,527	+		SO2546	0.28	+1.3
2,680,527	+		SO2546	0.28	+0.5
2,680,527	+		SO2546	0.28	+0.7
2,680,527	+		SO2546	0.28	+1.0
2,680,527	+		SO2546	0.28	-0.1
2,680,527	+		SO2546	0.28	-0.2
2,680,527	+		SO2546	0.28	+0.4
2,680,527	+		SO2546	0.28	+0.1
2,680,527	+		SO2546	0.28	+0.8
2,680,527	+		SO2546	0.28	+0.4
2,680,530	-		SO2546	0.29	-1.8
2,680,530	-		SO2546	0.29	-1.5
2,680,530	-		SO2546	0.29	+1.3
2,680,530	-		SO2546	0.29	+1.7
2,680,530	-		SO2546	0.29	+1.8
2,680,533	-		SO2546	0.29	+0.4
2,680,535	-		SO2546	0.30	+0.3
2,680,535	-		SO2546	0.30	-0.3
2,680,535	-		SO2546	0.30	-0.1
2,680,535	-		SO2546	0.30	-0.1
2,680,535	-		SO2546	0.30	+1.0
2,680,535	-		SO2546	0.30	-0.3
2,680,535	-		SO2546	0.30	+0.9
2,680,535	-		SO2546	0.30	-0.7
2,680,535	-		SO2546	0.30	-0.1
2,680,535	-		SO2546	0.30	-0.4
2,680,535	-		SO2546	0.30	-0.2
2,680,541	-		SO2546	0.31	+0.5
2,680,646	-		SO2546	0.49	+0.7
2,680,652	-		SO2546	0.50	+0.2
2,680,652	-		SO2546	0.50	-0.5
2,680,682	+		SO2546	0.55	+0.3
2,680,682	+		SO2546	0.55	-0.2
2,680,684	+		SO2546	0.56	+0.1
2,680,692	-		SO2546	0.57	+0.1
2,680,697	-		SO2546	0.58	-0.3
2,680,702	-		SO2546	0.59	-1.5
2,680,711	-		SO2546	0.60	+1.6
2,680,712	-				+1.7
2,680,712	-		SO2546	0.61	+1.2
2,680,728	-		SO2546	0.63	+1.7
2,680,729	-		SO2546	0.64	+0.9
2,680,739	-		SO2546	0.65	-0.9
2,680,739	-		SO2546	0.65	+1.2
2,680,739	-		SO2546	0.65	-0.3
2,680,740	+		SO2546	0.65	+1.9
2,680,769	-		SO2546	0.71	-1.4
2,680,795	+		SO2546	0.75	+0.4
2,680,795	+		SO2546	0.75	+0.2
2,680,795	+		SO2546	0.75	-0.8
2,680,798	-		SO2546	0.76	-1.1
2,680,798	-		SO2546	0.76	-0.0
2,680,803	-		SO2546	0.76	-0.8
2,680,803	-		SO2546	0.76	-2.1
2,680,808	-		SO2546	0.77	+0.3
2,680,809	+		SO2546	0.77	+2.5
2,680,818	+		SO2546	0.79	-0.6
2,680,826	+		SO2546	0.80	+0.0
2,680,896	+				-0.1
2,680,899	-				-0.1
2,680,908	+				+0.5
2,680,909	-				+0.4
2,680,913	+				+1.1
2,680,913	+				-1.1
2,680,913	+				-0.8
2,680,913	+				-0.8
2,680,913	+				+0.8
2,680,913	+				+0.8
2,680,913	+				-0.2
2,680,913	+				-1.1
2,680,913	+				+2.3
2,680,913	+				+1.3
2,680,913	+				+0.1
2,680,913	+				-1.1
2,680,921	-				+0.7
2,680,921	-				+1.0
2,680,942	+				+2.8
2,680,945	-				-0.5
2,680,962	+				-0.6
2,680,962	+				-0.4
2,680,962	+				+0.8
2,680,964	+				+0.6
2,680,970	-				+1.1
2,680,970	-				-0.3
2,680,970	-				+0.3
2,680,972	-		SO2547	0.10	+0.9
2,680,979	+		SO2547	0.12	+1.0
2,681,008	+		SO2547	0.20	+0.5
2,681,047	+		SO2547	0.31	-2.7
2,681,065	-		SO2547	0.36	+1.9
2,681,105	-		SO2547	0.47	+0.6
2,681,107	+		SO2547	0.47	+0.1
2,681,107	+		SO2547	0.47	+0.5
2,681,107	+		SO2547	0.47	+2.7
2,681,107	+		SO2547	0.47	-0.3
2,681,107	+		SO2547	0.47	+0.7
2,681,107	+		SO2547	0.47	+0.2
2,681,107	+		SO2547	0.47	+0.2
2,681,115	-		SO2547	0.49	+1.5
2,681,115	-		SO2547	0.49	+1.5
2,681,115	-		SO2547	0.49	+0.2
2,681,115	-		SO2547	0.49	-1.1
2,681,115	-		SO2547	0.49	+0.3
2,681,115	-		SO2547	0.49	+1.1
2,681,115	-		SO2547	0.49	-0.4
2,681,115	-		SO2547	0.49	-0.4
2,681,115	-		SO2547	0.49	-0.1
2,681,115	-		SO2547	0.49	+0.4
2,681,115	-		SO2547	0.49	-0.6
2,681,115	-		SO2547	0.49	-1.0
2,681,122	-		SO2547	0.51	+1.1
2,681,139	-		SO2547	0.56	+0.7
2,681,213	-		SO2547	0.76	+0.7
2,681,218	-		SO2547	0.78	+0.3
2,681,228	-		SO2547	0.80	+1.1
2,681,251	-		SO2547	0.87	-0.7
2,681,433	+				+0.5
2,681,552	+				+1.1
2,681,633	+				-0.9
2,681,704	+				-1.7
2,681,704	+				-0.5
2,681,704	+				-1.5
2,681,712	-				-0.9
2,681,764	+				-1.0
2,681,814	-				-0.5
2,681,861	+				-0.3
2,681,861	+				+0.5
2,681,869	-				+0.1