Strain Fitness in Shewanella oneidensis MR-1 around SO1197

Experiment: M2 center

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO1195 and rrmJ are separated by 90 nucleotidesrrmJ and ftsH are separated by 53 nucleotidesftsH and folP are separated by 159 nucleotides SO1195: SO1195 - conserved hypothetical protein TIGR00253 (NCBI ptt file), at 1,238,792 to 1,239,091 SO1195 SO1196: rrmJ - ribosomal RNA large subunit methyltransferase J (NCBI ptt file), at 1,239,182 to 1,239,811 rrmJ SO1197: ftsH - cell division protein FtsH (NCBI ptt file), at 1,239,865 to 1,241,814 ftsH SO1198: folP - dihydropteroate synthase (NCBI ptt file), at 1,241,974 to 1,242,807 folP Position (kb) 1239 1240 1241 1242Strain fitness (log2 ratio) -3 -2 -1 0 1at 1238.976 kb on + strand, within SO1195at 1239.139 kb on - strandat 1239.139 kb on - strandat 1239.141 kb on + strandat 1239.343 kb on - strand, within rrmJat 1239.660 kb on + strand, within rrmJat 1239.771 kb on + strandat 1241.781 kb on + strandat 1241.954 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M2 center
remove
1,238,976 + SO1195 0.61 -1.4
1,239,139 - -1.2
1,239,139 - -0.4
1,239,141 + -1.3
1,239,343 - rrmJ SO1196 0.26 -0.9
1,239,660 + rrmJ SO1196 0.76 -0.7
1,239,771 + -2.8
1,241,781 + -2.4
1,241,954 + +0.6

Or see this region's nucleotide sequence