Strain Fitness in Shewanella oneidensis MR-1 around SO0992

Experiment: M2 center

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_0991 and lysS are separated by 29 nucleotideslysS and SO0994 are separated by 111 nucleotidesSO0994 and SO0995 are separated by 199 nucleotides SO_0991: SO_0991 - no description, at 1,024,489 to 1,025,547 _0991 SO0992: lysS - lysyl-tRNA synthetase (NCBI ptt file), at 1,025,577 to 1,027,079 lysS SO0994: SO0994 - conserved hypothetical protein (NCBI ptt file), at 1,027,191 to 1,027,631 SO0994 SO0995: SO0995 - hypothetical protein (NCBI ptt file), at 1,027,831 to 1,028,025 SO0995 Position (kb) 1025 1026 1027 1028Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1027.106 kb on - strandat 1027.106 kb on - strandat 1027.234 kb on + strandat 1027.242 kb on - strand, within SO0994at 1027.246 kb on + strand, within SO0994at 1027.254 kb on - strand, within SO0994at 1027.357 kb on - strand, within SO0994at 1027.368 kb on + strand, within SO0994at 1027.376 kb on - strand, within SO0994at 1027.536 kb on - strand, within SO0994at 1027.568 kb on - strand, within SO0994at 1027.612 kb on - strandat 1027.654 kb on + strandat 1027.720 kb on - strandat 1027.802 kb on - strandat 1027.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M2 center
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1,027,106 - +1.0
1,027,106 - +3.1
1,027,234 + -1.1
1,027,242 - SO0994 0.12 +0.8
1,027,246 + SO0994 0.12 +1.2
1,027,254 - SO0994 0.14 +0.3
1,027,357 - SO0994 0.38 -1.0
1,027,368 + SO0994 0.40 -0.4
1,027,376 - SO0994 0.42 -1.8
1,027,536 - SO0994 0.78 -2.0
1,027,568 - SO0994 0.85 -0.2
1,027,612 - -0.5
1,027,654 + -0.0
1,027,720 - +0.5
1,027,802 - -0.5
1,027,831 - +0.1

Or see this region's nucleotide sequence