Experiment: M2 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trxC and fkbP-1 are separated by 174 nucleotides fkbP-1 and SO0454 overlap by 4 nucleotides SO0454 and SO0455 are separated by 42 nucleotides SO0455 and SO0456 are separated by 102 nucleotides
SO0452: trxC - thioredoxin 2 (NCBI ptt file), at 478,910 to 479,332
trxC
SO0453: fkbP-1 - peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file), at 479,507 to 479,842
fkbP-1
SO0454: SO0454 - conserved hypothetical protein (NCBI ptt file), at 479,839 to 480,261
SO0454
SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337
SO0455
SO0456: SO0456 - immunogenic-related protein (NCBI ptt file), at 482,440 to 483,396
SO0456
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 479.304 kb on + strand at 479.396 kb on + strand at 479.415 kb on - strand at 479.462 kb on - strand at 479.569 kb on + strand, within fkbP-1 at 479.610 kb on - strand, within fkbP-1 at 479.614 kb on + strand, within fkbP-1 at 479.622 kb on - strand, within fkbP-1 at 479.668 kb on - strand, within fkbP-1 at 479.687 kb on + strand, within fkbP-1 at 479.729 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.749 kb on + strand, within fkbP-1 at 479.883 kb on - strand, within SO0454 at 479.888 kb on + strand, within SO0454 at 479.921 kb on - strand, within SO0454 at 479.931 kb on + strand, within SO0454 at 479.941 kb on - strand, within SO0454 at 479.981 kb on - strand, within SO0454 at 480.011 kb on + strand, within SO0454 at 480.120 kb on - strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.137 kb on + strand, within SO0454 at 480.226 kb on + strand at 480.309 kb on - strand at 480.347 kb on - strand at 480.364 kb on + strand at 480.367 kb on - strand at 480.372 kb on - strand at 480.518 kb on + strand, within SO0455 at 480.526 kb on - strand, within SO0455 at 480.810 kb on + strand, within SO0455 at 480.871 kb on + strand, within SO0455 at 480.903 kb on + strand, within SO0455 at 480.911 kb on - strand, within SO0455 at 480.968 kb on - strand, within SO0455 at 481.015 kb on - strand, within SO0455 at 481.148 kb on - strand, within SO0455 at 481.227 kb on + strand, within SO0455 at 481.235 kb on - strand, within SO0455 at 481.244 kb on + strand, within SO0455 at 481.252 kb on - strand, within SO0455 at 481.554 kb on - strand, within SO0455 at 481.643 kb on - strand, within SO0455 at 481.644 kb on + strand, within SO0455 at 481.701 kb on + strand, within SO0455 at 481.777 kb on - strand, within SO0455 at 481.800 kb on - strand, within SO0455 at 481.822 kb on + strand, within SO0455 at 481.828 kb on - strand, within SO0455 at 481.953 kb on + strand, within SO0455 at 481.990 kb on + strand, within SO0455 at 481.998 kb on - strand, within SO0455 at 482.105 kb on + strand, within SO0455 at 482.119 kb on + strand, within SO0455 at 482.119 kb on + strand, within SO0455 at 482.120 kb on + strand, within SO0455 at 482.127 kb on - strand, within SO0455 at 482.143 kb on - strand at 482.203 kb on + strand at 482.273 kb on + strand at 482.273 kb on + strand at 482.281 kb on - strand at 482.303 kb on - strand at 482.330 kb on - strand at 482.352 kb on + strand at 482.352 kb on + strand at 482.352 kb on + strand at 482.357 kb on + strand at 482.360 kb on - strand at 482.360 kb on - strand at 482.385 kb on - strand at 482.393 kb on + strand at 482.398 kb on + strand at 482.400 kb on - strand at 482.401 kb on - strand at 482.424 kb on + strand at 482.424 kb on + strand at 482.424 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.437 kb on + strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.445 kb on - strand at 482.482 kb on - strand at 482.528 kb on + strand at 482.540 kb on + strand, within SO0456 at 482.596 kb on + strand, within SO0456 at 482.766 kb on + strand, within SO0456 at 482.800 kb on + strand, within SO0456 at 482.800 kb on + strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.808 kb on - strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on + strand, within SO0456 at 482.815 kb on - strand, within SO0456 at 482.823 kb on - strand, within SO0456 at 482.882 kb on + strand, within SO0456 at 482.915 kb on + strand, within SO0456 at 483.007 kb on + strand, within SO0456 at 483.139 kb on + strand, within SO0456 at 483.139 kb on + strand, within SO0456 at 483.141 kb on - strand, within SO0456 at 483.142 kb on - strand, within SO0456 at 483.201 kb on - strand, within SO0456 at 483.224 kb on + strand, within SO0456 at 483.269 kb on + strand, within SO0456 at 483.276 kb on + strand, within SO0456
Per-strain Table
Position Strand Gene LocusTag Fraction M2 center remove 479,304 + -0.9 479,396 + +1.3 479,415 - -0.1 479,462 - -0.5 479,569 + fkbP-1 SO0453 0.18 -0.1 479,610 - fkbP-1 SO0453 0.31 +0.0 479,614 + fkbP-1 SO0453 0.32 -1.4 479,622 - fkbP-1 SO0453 0.34 +0.9 479,668 - fkbP-1 SO0453 0.48 +1.3 479,687 + fkbP-1 SO0453 0.54 +0.4 479,729 + fkbP-1 SO0453 0.66 -1.5 479,744 + fkbP-1 SO0453 0.71 +0.4 479,744 + fkbP-1 SO0453 0.71 -0.4 479,749 + fkbP-1 SO0453 0.72 -0.4 479,883 - SO0454 0.10 +2.0 479,888 + SO0454 0.12 +0.6 479,921 - SO0454 0.19 +1.2 479,931 + SO0454 0.22 +1.6 479,941 - SO0454 0.24 -2.2 479,981 - SO0454 0.34 +0.7 480,011 + SO0454 0.41 -1.9 480,120 - SO0454 0.66 -0.1 480,130 + SO0454 0.69 -0.6 480,130 + SO0454 0.69 -1.1 480,130 + SO0454 0.69 +0.1 480,130 + SO0454 0.69 -1.1 480,137 + SO0454 0.70 +0.7 480,226 + +1.7 480,309 - -0.2 480,347 - +0.9 480,364 + -0.8 480,367 - +0.7 480,372 - -0.4 480,518 + SO0455 0.11 +0.5 480,526 - SO0455 0.11 +1.5 480,810 + SO0455 0.25 +0.6 480,871 + SO0455 0.28 +0.5 480,903 + SO0455 0.29 -1.0 480,911 - SO0455 0.30 -0.3 480,968 - SO0455 0.33 +1.0 481,015 - SO0455 0.35 -1.7 481,148 - SO0455 0.41 -2.0 481,227 + SO0455 0.45 +1.2 481,235 - SO0455 0.46 +0.2 481,244 + SO0455 0.46 -0.8 481,252 - SO0455 0.47 +0.7 481,554 - SO0455 0.61 +1.5 481,643 - SO0455 0.66 -2.2 481,644 + SO0455 0.66 -0.0 481,701 + SO0455 0.69 -0.6 481,777 - SO0455 0.72 -1.8 481,800 - SO0455 0.74 +2.4 481,822 + SO0455 0.75 -0.9 481,828 - SO0455 0.75 +0.6 481,953 + SO0455 0.81 +2.1 481,990 + SO0455 0.83 +0.4 481,998 - SO0455 0.83 -1.2 482,105 + SO0455 0.89 +1.4 482,119 + SO0455 0.89 -0.9 482,119 + SO0455 0.89 -0.1 482,120 + SO0455 0.89 +0.1 482,127 - SO0455 0.90 -2.4 482,143 - +0.5 482,203 + +0.4 482,273 + -0.9 482,273 + +1.2 482,281 - +0.7 482,303 - +0.8 482,330 - +1.3 482,352 + -1.2 482,352 + -1.9 482,352 + -0.8 482,357 + -0.7 482,360 - +1.9 482,360 - -0.4 482,385 - +0.7 482,393 + -1.3 482,398 + -1.0 482,400 - +0.0 482,401 - -0.4 482,424 + +0.5 482,424 + -0.6 482,424 + +0.3 482,437 + -0.1 482,437 + -0.2 482,437 + +0.4 482,437 + -0.1 482,437 + -0.2 482,437 + +0.1 482,437 + -1.0 482,437 + +1.3 482,445 - -2.2 482,445 - -0.3 482,445 - -1.9 482,445 - -1.7 482,445 - -0.7 482,445 - +0.2 482,445 - +1.6 482,482 - -1.9 482,528 + -0.1 482,540 + SO0456 0.10 -1.3 482,596 + SO0456 0.16 +0.0 482,766 + SO0456 0.34 -1.2 482,800 + SO0456 0.38 +0.6 482,800 + SO0456 0.38 +1.1 482,808 - SO0456 0.38 +0.0 482,808 - SO0456 0.38 -0.7 482,808 - SO0456 0.38 -1.1 482,808 - SO0456 0.38 -2.4 482,808 - SO0456 0.38 +0.9 482,808 - SO0456 0.38 -1.9 482,808 - SO0456 0.38 -0.5 482,815 + SO0456 0.39 +0.4 482,815 + SO0456 0.39 -2.2 482,815 + SO0456 0.39 -1.1 482,815 + SO0456 0.39 -2.0 482,815 - SO0456 0.39 +1.1 482,823 - SO0456 0.40 +1.8 482,882 + SO0456 0.46 -0.5 482,915 + SO0456 0.50 +0.4 483,007 + SO0456 0.59 +0.6 483,139 + SO0456 0.73 +1.3 483,139 + SO0456 0.73 -0.1 483,141 - SO0456 0.73 +0.4 483,142 - SO0456 0.73 -0.1 483,201 - SO0456 0.80 -2.6 483,224 + SO0456 0.82 +0.5 483,269 + SO0456 0.87 +0.4 483,276 + SO0456 0.87 +0.4
Or see this region's nucleotide sequence