Experiment: M2 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0437 and SO0438 are separated by 75 nucleotides SO0438 and SO0439 overlap by 4 nucleotides SO0439 and SO0440 are separated by 97 nucleotides
SO0437: SO0437 - sensory box protein (NCBI ptt file), at 461,211 to 463,781
SO0437
SO0438: SO0438 - oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file), at 463,857 to 464,660
SO0438
SO0439: SO0439 - hypothetical protein (NCBI ptt file), at 464,657 to 464,932
SO0439
SO0440: SO0440 - conserved hypothetical protein (NCBI ptt file), at 465,030 to 468,251
SO0440
Position (kb) 463
464
465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 462.858 kb on - strand, within SO0437 at 462.888 kb on - strand, within SO0437 at 463.002 kb on + strand, within SO0437 at 463.029 kb on - strand, within SO0437 at 463.098 kb on - strand, within SO0437 at 463.171 kb on - strand, within SO0437 at 463.183 kb on + strand, within SO0437 at 463.191 kb on - strand, within SO0437 at 463.430 kb on + strand, within SO0437 at 463.475 kb on + strand, within SO0437 at 463.577 kb on + strand at 463.577 kb on + strand at 463.774 kb on + strand at 463.775 kb on - strand at 463.791 kb on + strand at 463.810 kb on + strand at 463.990 kb on + strand, within SO0438 at 463.998 kb on - strand, within SO0438 at 464.053 kb on + strand, within SO0438 at 464.149 kb on + strand, within SO0438 at 464.258 kb on + strand, within SO0438 at 464.260 kb on + strand, within SO0438 at 464.291 kb on + strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.456 kb on + strand, within SO0438 at 464.481 kb on + strand, within SO0438 at 464.511 kb on - strand, within SO0438 at 464.593 kb on + strand at 464.601 kb on - strand at 464.601 kb on - strand at 464.646 kb on + strand at 464.914 kb on + strand at 464.916 kb on + strand at 464.946 kb on + strand at 465.059 kb on - strand at 465.082 kb on - strand at 465.107 kb on + strand at 465.107 kb on + strand at 465.108 kb on + strand at 465.108 kb on + strand at 465.116 kb on - strand at 465.116 kb on - strand at 465.175 kb on + strand at 465.228 kb on - strand at 465.273 kb on - strand at 465.316 kb on - strand at 465.507 kb on + strand, within SO0440 at 465.549 kb on + strand, within SO0440 at 465.649 kb on - strand, within SO0440
Per-strain Table
Position Strand Gene LocusTag Fraction M2 center remove 462,858 - SO0437 0.64 -2.8 462,888 - SO0437 0.65 -3.8 463,002 + SO0437 0.70 -1.7 463,029 - SO0437 0.71 -2.1 463,098 - SO0437 0.73 -1.8 463,171 - SO0437 0.76 -2.2 463,183 + SO0437 0.77 +1.1 463,191 - SO0437 0.77 -1.5 463,430 + SO0437 0.86 +1.0 463,475 + SO0437 0.88 -0.7 463,577 + -3.3 463,577 + -2.2 463,774 + -0.4 463,775 - -1.9 463,791 + -1.1 463,810 + +2.3 463,990 + SO0438 0.17 +0.1 463,998 - SO0438 0.18 -0.4 464,053 + SO0438 0.24 -0.9 464,149 + SO0438 0.36 -0.4 464,258 + SO0438 0.50 -0.9 464,260 + SO0438 0.50 -0.0 464,291 + SO0438 0.54 -1.1 464,299 - SO0438 0.55 +0.8 464,299 - SO0438 0.55 -0.7 464,299 - SO0438 0.55 +0.2 464,299 - SO0438 0.55 +0.6 464,456 + SO0438 0.75 -0.4 464,481 + SO0438 0.78 +2.0 464,511 - SO0438 0.81 -0.3 464,593 + +1.1 464,601 - -0.9 464,601 - +0.0 464,646 + +0.4 464,914 + -0.4 464,916 + +0.1 464,946 + +1.6 465,059 - +0.5 465,082 - -0.2 465,107 + +1.2 465,107 + +0.1 465,108 + +0.4 465,108 + +0.4 465,116 - -0.9 465,116 - -0.8 465,175 + -0.7 465,228 - -0.1 465,273 - +1.5 465,316 - -0.9 465,507 + SO0440 0.15 +0.4 465,549 + SO0440 0.16 +0.5 465,649 - SO0440 0.19 -2.1
Or see this region's nucleotide sequence