Experiment: M2 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt spoT and rpoZ are separated by 43 nucleotides rpoZ and gmk are separated by 58 nucleotides gmk and SO0362 are separated by 578 nucleotides
SO0359: spoT - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file), at 368,255 to 370,360
spoT
SO0360: rpoZ - DNA-directed RNA polymerase, omega subunit (NCBI ptt file), at 370,404 to 370,682
rpoZ
SO0361: gmk - guanylate kinase (NCBI ptt file), at 370,741 to 371,364
gmk
SO0362: SO0362 - hypothetical protein (NCBI ptt file), at 371,943 to 373,493
SO0362
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 370.409 kb on - strand at 370.436 kb on - strand, within rpoZ at 370.451 kb on - strand, within rpoZ at 370.479 kb on - strand, within rpoZ at 370.479 kb on - strand, within rpoZ at 370.549 kb on - strand, within rpoZ at 370.669 kb on - strand at 370.791 kb on - strand at 370.791 kb on - strand at 371.535 kb on - strand at 371.535 kb on - strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.947 kb on - strand at 372.042 kb on - strand at 372.141 kb on + strand, within SO0362 at 372.152 kb on + strand, within SO0362 at 372.153 kb on + strand, within SO0362 at 372.171 kb on - strand, within SO0362 at 372.171 kb on - strand, within SO0362 at 372.174 kb on - strand, within SO0362 at 372.200 kb on + strand, within SO0362 at 372.200 kb on + strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.209 kb on - strand, within SO0362 at 372.214 kb on - strand, within SO0362 at 372.292 kb on + strand, within SO0362 at 372.299 kb on - strand, within SO0362 at 372.346 kb on + strand, within SO0362
Per-strain Table
Position Strand Gene LocusTag Fraction M2 center remove 370,409 - +1.0 370,436 - rpoZ SO0360 0.11 -2.3 370,451 - rpoZ SO0360 0.17 -1.3 370,479 - rpoZ SO0360 0.27 -0.1 370,479 - rpoZ SO0360 0.27 +1.5 370,549 - rpoZ SO0360 0.52 -1.0 370,669 - +0.2 370,791 - -0.6 370,791 - +1.0 371,535 - +1.2 371,535 - +0.6 371,558 + +1.5 371,558 + -0.2 371,558 + +1.2 371,558 + +0.0 371,558 + +0.6 371,558 + +0.4 371,566 - -0.3 371,566 - -1.2 371,566 - +0.1 371,566 - -0.1 371,566 - +3.3 371,566 - -1.1 371,947 - -0.6 372,042 - -0.9 372,141 + SO0362 0.13 -0.1 372,152 + SO0362 0.13 -0.6 372,153 + SO0362 0.14 -0.7 372,171 - SO0362 0.15 +0.2 372,171 - SO0362 0.15 -1.5 372,174 - SO0362 0.15 -0.6 372,200 + SO0362 0.17 +1.2 372,200 + SO0362 0.17 -2.2 372,208 - SO0362 0.17 -1.2 372,208 - SO0362 0.17 -0.1 372,208 - SO0362 0.17 -0.3 372,208 - SO0362 0.17 -2.3 372,208 - SO0362 0.17 -1.4 372,208 - SO0362 0.17 -1.2 372,209 - SO0362 0.17 -2.1 372,214 - SO0362 0.17 -0.6 372,292 + SO0362 0.23 -0.2 372,299 - SO0362 0.23 -2.1 372,346 + SO0362 0.26 -2.6
Or see this region's nucleotide sequence