Experiment: M2 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0202 and SO0203 are separated by 46 nucleotides SO0203 and SO0204 are separated by 135 nucleotides
SO0202: SO0202 - conserved hypothetical protein (NCBI ptt file), at 210,808 to 211,326
SO0202
SO0203: SO0203 - hypothetical protein (NCBI ptt file), at 211,373 to 212,089
SO0203
SO0204: SO0204 - hypothetical protein (NCBI ptt file), at 212,225 to 212,884
SO0204
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 210.429 kb on + strand at 210.440 kb on + strand at 210.512 kb on - strand at 210.542 kb on - strand at 210.544 kb on + strand at 210.560 kb on + strand at 210.623 kb on + strand at 210.631 kb on - strand at 210.643 kb on - strand at 210.734 kb on - strand at 210.759 kb on + strand at 210.767 kb on - strand at 210.767 kb on - strand at 210.767 kb on - strand at 210.772 kb on + strand at 210.772 kb on + strand at 210.849 kb on + strand at 210.903 kb on + strand, within SO0202 at 210.903 kb on + strand, within SO0202 at 210.998 kb on + strand, within SO0202 at 211.036 kb on - strand, within SO0202 at 211.064 kb on + strand, within SO0202 at 211.113 kb on - strand, within SO0202 at 211.231 kb on + strand, within SO0202 at 211.239 kb on - strand, within SO0202 at 211.239 kb on - strand, within SO0202 at 211.241 kb on + strand, within SO0202 at 211.320 kb on + strand at 211.328 kb on - strand at 211.341 kb on + strand at 211.351 kb on + strand at 211.359 kb on - strand at 211.359 kb on - strand at 211.439 kb on - strand at 211.439 kb on - strand at 211.489 kb on + strand, within SO0203 at 211.490 kb on - strand, within SO0203 at 211.505 kb on - strand, within SO0203 at 211.514 kb on + strand, within SO0203 at 211.566 kb on + strand, within SO0203 at 211.568 kb on - strand, within SO0203 at 211.568 kb on - strand, within SO0203 at 211.633 kb on + strand, within SO0203 at 211.633 kb on + strand, within SO0203 at 211.641 kb on - strand, within SO0203 at 211.666 kb on + strand, within SO0203 at 211.674 kb on - strand, within SO0203 at 211.699 kb on + strand, within SO0203 at 211.699 kb on + strand, within SO0203 at 211.704 kb on + strand, within SO0203 at 211.704 kb on + strand, within SO0203 at 211.707 kb on - strand, within SO0203 at 211.707 kb on - strand, within SO0203 at 211.726 kb on + strand, within SO0203 at 211.732 kb on - strand, within SO0203 at 211.778 kb on - strand, within SO0203 at 211.804 kb on - strand, within SO0203 at 211.804 kb on - strand, within SO0203 at 211.874 kb on + strand, within SO0203 at 211.879 kb on + strand, within SO0203 at 211.882 kb on - strand, within SO0203 at 211.922 kb on + strand, within SO0203 at 211.933 kb on + strand, within SO0203 at 211.973 kb on - strand, within SO0203 at 212.027 kb on + strand at 212.027 kb on + strand at 212.028 kb on - strand at 212.028 kb on - strand at 212.079 kb on - strand at 212.114 kb on + strand at 212.138 kb on + strand at 212.138 kb on + strand at 212.146 kb on - strand at 212.186 kb on + strand at 212.189 kb on + strand at 212.189 kb on + strand at 212.189 kb on + strand at 212.197 kb on - strand at 212.197 kb on - strand at 212.197 kb on - strand at 212.208 kb on - strand at 212.235 kb on - strand at 212.235 kb on - strand at 212.282 kb on + strand at 212.283 kb on + strand at 212.309 kb on + strand, within SO0204 at 212.322 kb on + strand, within SO0204 at 212.327 kb on + strand, within SO0204 at 212.328 kb on + strand, within SO0204 at 212.353 kb on + strand, within SO0204 at 212.353 kb on + strand, within SO0204 at 212.371 kb on - strand, within SO0204 at 212.463 kb on - strand, within SO0204 at 212.478 kb on + strand, within SO0204 at 212.483 kb on + strand, within SO0204 at 212.491 kb on - strand, within SO0204 at 212.526 kb on + strand, within SO0204 at 212.580 kb on - strand, within SO0204 at 212.635 kb on - strand, within SO0204 at 212.656 kb on + strand, within SO0204 at 212.705 kb on + strand, within SO0204 at 212.713 kb on - strand, within SO0204 at 212.724 kb on - strand, within SO0204 at 212.747 kb on - strand, within SO0204 at 212.791 kb on + strand, within SO0204 at 212.791 kb on + strand, within SO0204 at 212.791 kb on + strand, within SO0204 at 212.793 kb on + strand, within SO0204 at 212.799 kb on - strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.810 kb on + strand, within SO0204 at 212.817 kb on + strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.818 kb on - strand, within SO0204 at 212.825 kb on + strand at 212.825 kb on + strand at 212.825 kb on + strand at 212.825 kb on + strand at 212.825 kb on + strand at 212.825 kb on + strand at 212.825 kb on + strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.833 kb on - strand at 212.835 kb on + strand at 212.835 kb on + strand at 212.835 kb on + strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.843 kb on - strand at 212.844 kb on + strand at 212.851 kb on + strand at 212.852 kb on - strand at 212.939 kb on + strand at 212.996 kb on - strand at 213.006 kb on + strand at 213.034 kb on + strand at 213.039 kb on - strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.075 kb on - strand at 213.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M2 center remove 210,429 + +1.2 210,440 + -0.2 210,512 - -2.0 210,542 - +0.3 210,544 + +0.6 210,560 + +0.6 210,623 + -0.7 210,631 - -1.9 210,643 - -0.2 210,734 - -0.6 210,759 + +0.5 210,767 - -0.2 210,767 - -0.0 210,767 - +0.1 210,772 + -3.3 210,772 + +0.7 210,849 + -1.7 210,903 + SO0202 0.18 -1.9 210,903 + SO0202 0.18 +0.2 210,998 + SO0202 0.37 -3.3 211,036 - SO0202 0.44 +1.2 211,064 + SO0202 0.49 +1.2 211,113 - SO0202 0.59 +0.8 211,231 + SO0202 0.82 +0.3 211,239 - SO0202 0.83 +0.5 211,239 - SO0202 0.83 -0.2 211,241 + SO0202 0.83 +0.9 211,320 + -1.8 211,328 - +0.5 211,341 + -0.1 211,351 + -1.2 211,359 - -0.2 211,359 - +1.1 211,439 - +1.3 211,439 - -0.5 211,489 + SO0203 0.16 -0.1 211,490 - SO0203 0.16 -2.0 211,505 - SO0203 0.18 -0.3 211,514 + SO0203 0.20 -2.8 211,566 + SO0203 0.27 -1.2 211,568 - SO0203 0.27 -0.5 211,568 - SO0203 0.27 -0.3 211,633 + SO0203 0.36 -2.8 211,633 + SO0203 0.36 -1.3 211,641 - SO0203 0.37 -0.5 211,666 + SO0203 0.41 +1.6 211,674 - SO0203 0.42 +1.2 211,699 + SO0203 0.45 -1.3 211,699 + SO0203 0.45 +1.1 211,704 + SO0203 0.46 +0.2 211,704 + SO0203 0.46 -1.8 211,707 - SO0203 0.47 -0.8 211,707 - SO0203 0.47 +0.3 211,726 + SO0203 0.49 +1.1 211,732 - SO0203 0.50 +0.5 211,778 - SO0203 0.56 -1.0 211,804 - SO0203 0.60 +1.4 211,804 - SO0203 0.60 -1.7 211,874 + SO0203 0.70 +0.9 211,879 + SO0203 0.71 -0.8 211,882 - SO0203 0.71 -0.2 211,922 + SO0203 0.77 +0.8 211,933 + SO0203 0.78 -1.2 211,973 - SO0203 0.84 -2.9 212,027 + +1.8 212,027 + +0.0 212,028 - -2.3 212,028 - -0.5 212,079 - +0.8 212,114 + +1.3 212,138 + -3.1 212,138 + -0.9 212,146 - +0.3 212,186 + -0.3 212,189 + -2.4 212,189 + +1.7 212,189 + +0.4 212,197 - -1.7 212,197 - +2.2 212,197 - +1.0 212,208 - +1.0 212,235 - +0.9 212,235 - -1.8 212,282 + +0.0 212,283 + +0.6 212,309 + SO0204 0.13 +0.3 212,322 + SO0204 0.15 +0.0 212,327 + SO0204 0.15 +0.2 212,328 + SO0204 0.16 -1.3 212,353 + SO0204 0.19 +2.1 212,353 + SO0204 0.19 -2.0 212,371 - SO0204 0.22 +0.0 212,463 - SO0204 0.36 +1.2 212,478 + SO0204 0.38 +3.0 212,483 + SO0204 0.39 -0.7 212,491 - SO0204 0.40 -1.4 212,526 + SO0204 0.46 -0.4 212,580 - SO0204 0.54 +0.5 212,635 - SO0204 0.62 +1.5 212,656 + SO0204 0.65 -3.1 212,705 + SO0204 0.73 -0.5 212,713 - SO0204 0.74 -0.6 212,724 - SO0204 0.76 -1.7 212,747 - SO0204 0.79 +1.6 212,791 + SO0204 0.86 +1.3 212,791 + SO0204 0.86 +0.9 212,791 + SO0204 0.86 +0.4 212,793 + SO0204 0.86 -1.1 212,799 - SO0204 0.87 -0.6 212,810 + SO0204 0.89 +1.5 212,810 + SO0204 0.89 -0.7 212,810 + SO0204 0.89 -0.2 212,810 + SO0204 0.89 +1.5 212,810 + SO0204 0.89 -0.2 212,810 + SO0204 0.89 +0.3 212,810 + SO0204 0.89 +1.8 212,810 + SO0204 0.89 -0.5 212,810 + SO0204 0.89 -0.3 212,810 + SO0204 0.89 +0.5 212,810 + SO0204 0.89 +2.5 212,810 + SO0204 0.89 +0.9 212,810 + SO0204 0.89 +0.3 212,810 + SO0204 0.89 -2.4 212,810 + SO0204 0.89 +0.4 212,817 + SO0204 0.90 +0.2 212,818 - SO0204 0.90 +1.0 212,818 - SO0204 0.90 +1.0 212,818 - SO0204 0.90 -0.5 212,818 - SO0204 0.90 +2.4 212,818 - SO0204 0.90 -0.1 212,818 - SO0204 0.90 +0.4 212,818 - SO0204 0.90 -0.7 212,818 - SO0204 0.90 -1.6 212,818 - SO0204 0.90 +2.8 212,818 - SO0204 0.90 +1.6 212,818 - SO0204 0.90 -2.3 212,818 - SO0204 0.90 -0.0 212,818 - SO0204 0.90 -1.4 212,818 - SO0204 0.90 +1.1 212,818 - SO0204 0.90 -1.1 212,818 - SO0204 0.90 -1.0 212,818 - SO0204 0.90 +0.5 212,818 - SO0204 0.90 +0.6 212,825 + +0.4 212,825 + -3.4 212,825 + -2.8 212,825 + +0.4 212,825 + -0.6 212,825 + +0.6 212,825 + -1.6 212,833 - +0.6 212,833 - -1.6 212,833 - +0.6 212,833 - +0.1 212,833 - +0.4 212,833 - -1.9 212,833 - +0.3 212,833 - +0.9 212,835 + +0.7 212,835 + +2.1 212,835 + -0.3 212,843 - -1.9 212,843 - +0.2 212,843 - +0.5 212,843 - -0.8 212,843 - -1.6 212,843 - -1.0 212,843 - -0.8 212,843 - -2.4 212,843 - -0.2 212,844 + -1.1 212,851 + -3.0 212,852 - -1.1 212,939 + -2.0 212,996 - +0.2 213,006 + -1.4 213,034 + +1.9 213,039 - -0.8 213,067 + +0.6 213,067 + +0.5 213,067 + -0.0 213,075 - +0.4 213,075 - +0.1
Or see this region's nucleotide sequence