Strain Fitness in Shewanella oneidensis MR-1 around SOA0164

Experiment: M1 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M1 center
151,634	-				+0.5
151,651	+				-1.3
151,656	+				+0.7
151,656	+				+0.2
151,659	-				+0.5
151,659	-				-1.6
151,659	-				-0.1
151,659	-				-1.3
151,659	-				+0.6
151,659	-				+0.7
151,661	-				+0.2
151,664	-				-3.7
151,666	+				+0.6
151,670	+				+0.1
151,686	-				+1.3
151,695	-				-2.4
151,696	+				-2.6
151,696	+				+0.0
151,696	+				-1.2
151,696	+				+0.6
151,696	+				+1.2
151,696	+				-1.0
151,702	+				-1.0
151,702	+				+1.9
151,703	-				-0.9
151,704	-				+0.7
151,704	-				+1.4
151,704	-				+0.3
151,707	+				-1.8
151,710	+				-0.1
151,710	-				-1.1
151,710	-				-4.0
151,710	-				-1.2
151,710	-				-0.3
151,710	-				-0.1
151,734	+				+0.4
151,742	-				-0.2
151,742	-				+0.1
151,742	-				-1.0
151,749	+				-1.0
151,750	+				-2.3
151,750	+				+1.7
151,750	+				-1.0
151,750	+				-0.5
151,750	+				-3.0
151,757	-				+2.5
151,757	-				-2.3
151,757	-				-1.1
151,758	-				+0.4
151,758	-				+3.2
151,758	-				-0.5
151,758	-				+0.5
151,758	-				+2.0
151,758	-				+0.4
151,765	+				+0.3
151,776	+				-1.0
151,779	+				-1.4
151,783	+				-0.6
151,784	+				+0.5
151,787	-				-0.4
151,792	-				+0.6
151,797	+				-1.1
151,822	-				+1.2
151,842	+				-1.7
151,842	-				-1.9
151,850	-				-1.2
151,862	+				-0.7
151,879	+				-2.6
151,880	+				+0.1
151,887	-				+0.4
151,892	+				-2.3
151,902	+				+0.6
151,980	+				+1.2
152,009	-				-0.1
152,015	+				-0.3
152,023	-				-2.2
152,023	-				-2.1
152,028	-				-0.8
152,030	+				-0.8
152,030	+				+0.9
152,031	-				+0.8
152,039	-				-0.7
152,041	+				-0.0
152,041	+				-0.5
152,048	+		SO_A0163	0.11	+0.3
152,048	+		SO_A0163	0.11	+1.8
152,049	+		SO_A0163	0.11	+0.1
152,049	-		SO_A0163	0.11	+0.7
152,049	-		SO_A0163	0.11	-0.4
152,049	-		SO_A0163	0.11	-1.2
152,049	-		SO_A0163	0.11	+0.8
152,049	-		SO_A0163	0.11	+0.3
152,056	-		SO_A0163	0.12	+0.5
152,056	-		SO_A0163	0.12	+0.3
152,057	-		SO_A0163	0.13	-1.3
152,057	-		SO_A0163	0.13	-2.8
152,064	+		SO_A0163	0.14	-2.6
152,064	+		SO_A0163	0.14	-0.9
152,064	+		SO_A0163	0.14	-0.2
152,064	+		SO_A0163	0.14	+0.2
152,064	+		SO_A0163	0.14	+0.5
152,064	+		SO_A0163	0.14	-0.4
152,064	+		SO_A0163	0.14	-1.7
152,064	+		SO_A0163	0.14	-2.2
152,064	+		SO_A0163	0.14	-0.2
152,064	+		SO_A0163	0.14	+1.0
152,064	+		SO_A0163	0.14	+1.1
152,064	+		SO_A0163	0.14	-1.6
152,064	+		SO_A0163	0.14	+1.1
152,064	+		SO_A0163	0.14	+1.6
152,064	+		SO_A0163	0.14	-1.2
152,064	+		SO_A0163	0.14	-1.1
152,071	+		SO_A0163	0.15	+0.8
152,072	-				-1.0
152,072	-		SO_A0163	0.15	+1.2
152,072	-		SO_A0163	0.15	-0.6
152,072	-		SO_A0163	0.15	-0.7
152,072	-		SO_A0163	0.15	+1.3
152,072	-		SO_A0163	0.15	+1.4
152,072	-		SO_A0163	0.15	-0.6
152,072	-		SO_A0163	0.15	-0.2
152,072	-		SO_A0163	0.15	-0.5
152,072	-		SO_A0163	0.15	+0.7
152,074	+		SO_A0163	0.15	-1.5
152,079	-		SO_A0163	0.16	-0.4
152,080	-		SO_A0163	0.16	-2.1
152,082	-		SO_A0163	0.17	-1.0
152,082	-		SO_A0163	0.17	+0.1
152,090	-		SO_A0163	0.18	+1.5
152,093	+		SO_A0163	0.19	+1.4
152,094	+		SO_A0163	0.19	-3.0
152,110	-		SO_A0163	0.22	+0.7
152,143	+		SO_A0163	0.27	+1.1
152,151	-		SO_A0163	0.29	+0.5
152,151	-		SO_A0163	0.29	+0.8
152,151	-		SO_A0163	0.29	+0.3
152,151	-		SO_A0163	0.29	-1.3
152,153	+		SO_A0163	0.29	-0.2
152,153	+		SO_A0163	0.29	-0.2
152,153	+		SO_A0163	0.29	+0.8
152,153	+		SO_A0163	0.29	-0.4
152,158	+		SO_A0163	0.30	+0.6
152,158	+		SO_A0163	0.30	-0.4
152,161	-		SO_A0163	0.30	-0.6
152,161	-		SO_A0163	0.30	+0.7
152,161	-		SO_A0163	0.30	+0.6
152,161	-		SO_A0163	0.30	+1.6
152,166	-		SO_A0163	0.31	+1.5
152,171	-		SO_A0163	0.32	+0.1
152,175	+		SO_A0163	0.33	+0.5
152,206	-		SO_A0163	0.38	-0.4
152,209	-		SO_A0163	0.39	+0.9
152,243	+		SO_A0163	0.45	+0.6
152,266	+		SO_A0163	0.48	+1.8
152,266	+		SO_A0163	0.48	+0.7
152,269	-		SO_A0163	0.49	-1.1
152,274	-		SO_A0163	0.50	-1.2
152,321	+		SO_A0163	0.58	-0.4
152,322	+		SO_A0163	0.58	-0.7
152,329	-		SO_A0163	0.59	+0.6
152,330	-		SO_A0163	0.59	+1.4
152,331	+		SO_A0163	0.60	+0.8
152,373	-		SO_A0163	0.67	+2.0
152,377	-		SO_A0163	0.68	+2.1
152,392	-		SO_A0163	0.70	+1.0
152,396	+		SO_A0163	0.71	+1.1
152,402	+		SO_A0163	0.72	-1.2
152,407	+		SO_A0163	0.73	+0.3
152,417	+		SO_A0163	0.74	+0.1
152,421	+		SO_A0163	0.75	-2.7
152,425	-		SO_A0163	0.76	+0.5
152,436	+		SO_A0163	0.78	-0.1
152,436	+		SO_A0163	0.78	+0.1
152,438	-		SO_A0163	0.78	+0.3
152,444	+		SO_A0163	0.79	-1.7
152,445	+		SO_A0163	0.79	-0.4
152,445	+		SO_A0163	0.79	-1.0
152,450	+		SO_A0163	0.80	+0.4
152,450	+		SO_A0163	0.80	-0.6
152,453	-		SO_A0163	0.81	+1.1
152,458	-		SO_A0163	0.81	-0.2
152,458	-		SO_A0163	0.81	-0.5
152,458	-		SO_A0163	0.81	-1.6
152,516	+				-0.6
152,516	+				+0.9
152,524	-				-0.1
152,574	+				+2.4
152,574	+				-0.6
152,574	+				+0.6
152,574	+				-0.7
152,574	+				-0.4
152,574	+				-2.3
152,580	+				-0.6
152,580	+				-3.6
152,580	+				+0.2
152,580	+				-0.2
152,580	+				-1.9
152,580	+				+1.8
152,580	+				-1.8
152,580	+				-1.9
152,580	+				+1.0
152,580	+				-1.1
152,581	+				+0.7
152,581	+				-0.2
152,582	-				-1.3
152,582	-				+1.3
152,582	-				+0.7
152,582	-				+2.1
152,582	-				+1.6
152,582	-				+0.6
152,582	-				+0.4
152,582	-				-0.6
152,582	-				-0.7
152,582	-				+0.4
152,582	-				+1.1
152,582	-				+0.3
152,588	-				-2.0
152,588	-				-3.1
152,588	-				-0.8
152,588	-				-1.8
152,588	-				+1.5
152,588	-				+1.5
152,588	-				+0.7
152,588	-				+1.1
152,606	-				-1.0
152,611	-				-0.2
152,638	+				-1.5
152,638	+				+1.1
152,688	-				-1.4
152,703	+				-0.5
152,704	+				+2.1
152,704	+				-0.7
152,704	+				+1.1
152,704	+				-0.2
152,704	+				+0.5
152,712	-				-0.1
152,712	-				+0.6
152,712	-				-1.0
152,712	-				-0.8
152,717	-				+1.7
152,717	-				+0.2
152,719	+				-0.6
152,719	+				-0.1
152,727	-		SOA0164	0.11	-2.9
152,731	+		SOA0164	0.11	+0.4
152,731	+		SOA0164	0.11	-1.2
152,732	-		SOA0164	0.11	+0.7
152,739	-		SOA0164	0.12	+1.5
152,739	-		SOA0164	0.12	-1.6
152,741	+		SOA0164	0.12	+0.4
152,751	+		SOA0164	0.13	-0.0
152,754	-		SOA0164	0.13	-0.5
152,759	-		SOA0164	0.13	+0.1
152,770	+		SOA0164	0.14	-0.1
152,810	-		SOA0164	0.18	-0.6
152,813	+		SOA0164	0.18	+0.9
152,835	+		SOA0164	0.20	+0.5
152,836	-		SOA0164	0.20	+2.6
152,913	+		SOA0164	0.27	+1.5
152,913	+		SOA0164	0.27	-3.4
152,913	+		SOA0164	0.27	+0.9
152,913	+		SOA0164	0.27	+0.4
152,921	-		SOA0164	0.27	-0.7
152,932	+		SOA0164	0.28	-0.5
152,935	+		SOA0164	0.29	-0.8
153,019	+		SOA0164	0.36	-0.7
153,028	+		SOA0164	0.37	+0.6
153,031	-		SOA0164	0.37	-1.2
153,031	-		SOA0164	0.37	-2.1
153,034	-		SOA0164	0.37	-2.0
153,050	+		SOA0164	0.39	+1.8
153,050	+		SOA0164	0.39	-1.2
153,102	-		SOA0164	0.43	+0.4
153,148	+		SOA0164	0.47	+0.1
153,160	-		SOA0164	0.48	+1.7
153,176	+		SOA0164	0.49	-0.0
153,184	-		SOA0164	0.50	+0.3
153,223	+		SOA0164	0.54	+1.8
153,223	+		SOA0164	0.54	-1.5
153,223	+		SOA0164	0.54	-0.4
153,223	+		SOA0164	0.54	-1.5
153,226	-		SOA0164	0.54	-1.6
153,231	-		SOA0164	0.54	+0.3
153,231	-		SOA0164	0.54	+0.1
153,238	-		SOA0164	0.55	-1.0
153,332	+		SOA0164	0.63	-0.4
153,347	-		SOA0164	0.64	+1.4
153,347	-		SOA0164	0.64	+0.3
153,367	+		SOA0164	0.66	+1.1
153,393	+		SOA0164	0.68	-0.3
153,393	+		SOA0164	0.68	+0.5
153,393	+		SOA0164	0.68	+0.7
153,393	+		SOA0164	0.68	-2.5
153,401	-		SOA0164	0.69	-1.7
153,401	-		SOA0164	0.69	-1.2
153,401	-		SOA0164	0.69	+1.9
153,401	-		SOA0164	0.69	+0.1
153,401	-		SOA0164	0.69	-3.3
153,402	-		SOA0164	0.69	+0.5
153,413	-		SOA0164	0.70	-0.4
153,444	-		SOA0164	0.73	+0.8
153,450	+		SOA0164	0.73	-3.0
153,451	-		SOA0164	0.73	-1.0
153,451	-		SOA0164	0.73	+1.0
153,453	-		SOA0164	0.74	+0.4
153,453	-		SOA0164	0.74	-0.5
153,458	-		SOA0164	0.74	-0.6
153,514	+		SOA0164	0.79	-2.4
153,514	+		SOA0164	0.79	-0.9
153,516	+		SOA0164	0.79	-0.4
153,516	+		SOA0164	0.79	+1.2
153,516	+		SOA0164	0.79	-0.1
153,517	-		SOA0164	0.79	-0.0
153,522	-		SOA0164	0.80	-0.7
153,522	-		SOA0164	0.80	+0.9
153,522	-				-0.2
153,522	-		SOA0164	0.80	+1.2
153,524	-		SOA0164	0.80	-1.9
153,524	-		SOA0164	0.80	+0.1
153,524	-		SOA0164	0.80	+1.1
153,529	-		SOA0164	0.80	+0.7
153,560	-		SOA0164	0.83	+1.3
153,561	-		SOA0164	0.83	-0.6
153,587	-		SOA0164	0.85	+1.1
153,592	-		SOA0164	0.86	+0.9
153,603	+		SOA0164	0.87	+0.5
153,603	+		SOA0164	0.87	-1.8
153,611	-		SOA0164	0.87	-0.2
153,611	-		SOA0164	0.87	-1.1
153,656	-				-1.1
153,685	+				-2.9
153,728	+				-1.1
153,728	+				+0.1
153,736	-				-1.7
153,736	-				-1.0
153,736	-				-1.8
153,763	-				+1.7
153,810	+				-0.3
153,828	+				-1.3
153,828	+				-1.0
153,828	+				+0.1
153,828	+				+1.8
153,828	+				+2.0
153,836	-				-0.2
153,836	-				+2.5
153,836	-				-2.2
153,841	-				-0.4
153,849	-				+0.6
153,973	+				+0.2
153,973	+				+0.9
153,973	+				+0.2
153,991	-				+2.6
154,145	-				-1.7
154,150	+				+1.0
154,190	+		SOA0165	0.11	-2.1
154,191	-		SOA0165	0.11	-1.7
154,195	+		SOA0165	0.12	+1.8
154,196	-		SOA0165	0.12	+1.9
154,200	+		SOA0165	0.12	-0.0
154,201	-		SOA0165	0.12	-0.3
154,208	-		SOA0165	0.13	-0.8
154,226	+		SOA0165	0.15	-0.4
154,226	+		SOA0165	0.15	-0.2
154,234	-		SOA0165	0.16	-0.5
154,234	-		SOA0165	0.16	-0.8
154,247	-		SOA0165	0.18	+1.5
154,258	+		SOA0165	0.19	+0.5
154,258	-		SOA0165	0.19	-0.3
154,258	-		SOA0165	0.19	+2.3
154,276	+		SOA0165	0.21	+1.8
154,286	+		SOA0165	0.22	-1.0
154,301	+		SOA0165	0.24	-0.7
154,304	-		SOA0165	0.24	+0.9
154,316	+		SOA0165	0.26	-2.7
154,316	+		SOA0165	0.26	-0.7
154,316	+		SOA0165	0.26	+3.4
154,316	+		SOA0165	0.26	-0.1
154,316	+		SOA0165	0.26	-2.4
154,316	+		SOA0165	0.26	-2.3
154,316	+		SOA0165	0.26	-0.5
154,316	+		SOA0165	0.26	+0.9
154,316	+		SOA0165	0.26	-0.1
154,316	+		SOA0165	0.26	+0.2
154,316	+		SOA0165	0.26	-1.0
154,316	+		SOA0165	0.26	+0.4
154,324	-		SOA0165	0.27	-1.4
154,324	-		SOA0165	0.27	+0.8
154,324	-		SOA0165	0.27	-0.0
154,324	-		SOA0165	0.27	-0.8
154,324	-		SOA0165	0.27	-1.0
154,324	-		SOA0165	0.27	-1.1
154,324	-		SOA0165	0.27	-1.3
154,324	-		SOA0165	0.27	-0.6
154,324	-		SOA0165	0.27	+1.0
154,324	-		SOA0165	0.27	+0.6
154,345	+		SOA0165	0.29	-0.2
154,357	+		SOA0165	0.30	-0.7
154,445	+		SOA0165	0.40	-1.9
154,502	-		SOA0165	0.47	-1.5
154,504	+		SOA0165	0.47	-1.5
154,518	-		SOA0165	0.49	+0.3
154,533	+		SOA0165	0.51	+0.2
154,533	+		SOA0165	0.51	-1.3
154,533	+		SOA0165	0.51	-1.8
154,541	-		SOA0165	0.51	-1.0
154,541	-		SOA0165	0.51	-1.2
154,541	-		SOA0165	0.51	+0.3
154,541	-		SOA0165	0.51	+0.7
154,579	+		SOA0165	0.56	+0.2
154,595	+		SOA0165	0.58	+0.5
154,595	+		SOA0165	0.58	-0.7
154,624	+		SOA0165	0.61	+0.1
154,635	+		SOA0165	0.62	-1.7
154,648	+		SOA0165	0.64	-1.4
154,650	+		SOA0165	0.64	-1.9
154,650	+		SOA0165	0.64	+0.7
154,650	+		SOA0165	0.64	+0.5
154,650	+		SOA0165	0.64	-1.2
154,650	+		SOA0165	0.64	+0.1
154,658	-		SOA0165	0.65	-1.0
154,658	-				+0.3
154,658	-		SOA0165	0.65	+0.3
154,658	-		SOA0165	0.65	-0.8
154,662	+		SOA0165	0.65	+0.9
154,670	+		SOA0165	0.66	-0.9
154,670	-		SOA0165	0.66	-0.9
154,678	-		SOA0165	0.67	+2.2
154,727	-		SOA0165	0.73	-1.0
154,737	-		SOA0165	0.74	+0.0
154,748	+		SOA0165	0.75	+2.9