Strain Fitness in Shewanella oneidensis MR-1 around SO3794

Experiment: M1 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M1 center
3,944,189	-		SO3792	0.55	+0.8
3,944,301	-		SO3792	0.65	-0.2
3,944,302	-		SO3792	0.65	-0.6
3,944,451	+		SO3792	0.78	-1.0
3,944,451	+		SO3792	0.78	+0.2
3,944,625	-				+1.3
3,944,643	+				+1.0
3,944,643	+				+1.3
3,944,643	+				+0.6
3,944,748	+				+0.5
3,944,754	-		SO3793	0.12	+0.7
3,944,802	-		SO3793	0.26	-0.2
3,944,802	-		SO3793	0.26	-0.7
3,944,825	-		SO3793	0.34	-3.1
3,944,865	+		SO3793	0.46	+0.6
3,944,873	-		SO3793	0.49	-0.2
3,945,120	-				-2.0
3,945,267	-				-0.7
3,945,275	-				+0.7
3,945,291	+				+1.4
3,945,397	+				+0.2
3,945,405	+				+0.1
3,945,415	-		SO3794	0.10	-1.2
3,945,523	+		SO3794	0.15	-0.1
3,945,635	-		SO3794	0.20	-2.4
3,945,684	+		SO3794	0.22	-0.1
3,945,707	+		SO3794	0.23	-0.2
3,945,707	+		SO3794	0.23	+0.3
3,945,803	+		SO3794	0.27	+0.3
3,945,809	-		SO3794	0.27	+1.4
3,945,815	+		SO3794	0.28	-0.8
3,945,927	+		SO3794	0.33	-0.1
3,945,940	-		SO3794	0.33	+0.4
3,945,950	-		SO3794	0.34	-1.3
3,945,960	-		SO3794	0.34	-1.3
3,946,119	-		SO3794	0.41	+1.1
3,946,278	+		SO3794	0.48	+0.3
3,946,297	-		SO3794	0.49	+0.2
3,946,301	+		SO3794	0.49	+2.2
3,946,317	-		SO3794	0.50	+1.0
3,946,319	-		SO3794	0.50	+0.0
3,946,348	+		SO3794	0.51	+0.3
3,946,370	+		SO3794	0.52	+0.3
3,946,378	-		SO3794	0.52	+3.1
3,946,400	-		SO3794	0.53	-1.7
3,946,427	+		SO3794	0.54	-1.1
3,946,427	+		SO3794	0.54	-1.1
3,946,427	+		SO3794	0.54	-0.3
3,946,435	-		SO3794	0.55	-0.5
3,946,538	-		SO3794	0.59	-1.5
3,946,538	-		SO3794	0.59	-0.3
3,946,637	-		SO3794	0.64	-1.0
3,946,653	-		SO3794	0.64	+1.3
3,946,698	+		SO3794	0.66	-1.3
3,946,720	+		SO3794	0.67	-0.3
3,946,720	+		SO3794	0.67	+0.6
3,946,845	+		SO3794	0.73	+1.4
3,946,948	-		SO3794	0.77	-0.2
3,946,948	-		SO3794	0.77	+1.6
3,947,017	-		SO3794	0.80	-0.8
3,947,025	-		SO3794	0.81	-1.1
3,947,061	-		SO3794	0.82	-0.2
3,947,107	+		SO3794	0.84	+0.0
3,947,132	+		SO3794	0.85	-1.9
3,947,139	-		SO3794	0.86	+0.4
3,947,204	-		SO3794	0.89	-0.8
3,947,219	-		SO3794	0.89	-0.3
3,947,230	-		SO3794	0.90	-1.2
3,947,271	-				+1.3
3,947,272	-				+0.0
3,947,311	+				-0.1
3,947,323	+				-0.0
3,947,323	+				+0.4
3,947,323	+				-0.7
3,947,331	-				+1.2
3,947,355	+				-1.9
3,947,372	+				-0.8
3,947,378	+				+1.5
3,947,392	+				+1.9
3,947,392	+				-0.6
3,947,400	+				-0.2
3,947,400	-				+0.9
3,947,409	+				+0.2
3,947,412	+				-1.3
3,947,412	+				-0.7
3,947,412	+				+0.1
3,947,418	-				-0.5
3,947,428	+				+0.1
3,947,428	+				-0.2
3,947,428	+				-1.0
3,947,428	+				-1.8
3,947,428	+				+1.1
3,947,431	-				-2.5
3,947,433	+				+1.0
3,947,433	+				+0.9
3,947,433	+				-1.3
3,947,436	-				-1.6
3,947,436	-				+0.5
3,947,436	-				+0.1
3,947,436	-				-0.2
3,947,436	-				+0.1
3,947,441	-				+1.0
3,947,441	-				-1.2
3,947,441	-				-0.2
3,947,489	+				+1.6
3,947,497	-				-1.2
3,947,505	+				-0.9
3,947,518	-				-0.1
3,947,525	+				-0.5
3,947,525	+				+0.3
3,947,525	+				+2.4
3,947,525	+				+0.1
3,947,525	+				-0.3
3,947,525	+				-0.2
3,947,525	+				+2.4
3,947,525	+				+0.8
3,947,525	+				+0.5
3,947,525	+				-1.3
3,947,525	+				+0.5
3,947,525	+				+1.0
3,947,525	+				+1.5
3,947,525	+				-1.6
3,947,525	+				-1.4
3,947,525	+				-1.0
3,947,525	+				-0.1
3,947,525	+				-0.4
3,947,525	+				+0.3
3,947,525	+				-0.1
3,947,525	+				+1.0
3,947,532	-				+1.5
3,947,533	-				-0.2
3,947,533	-				-3.2
3,947,533	-				+0.8
3,947,533	-				-0.8
3,947,533	-				+0.8
3,947,533	-				+0.0
3,947,533	-				-1.9
3,947,533	-				-1.1
3,947,533	-				+0.3
3,947,533	-				-2.2
3,947,533	-				+0.8
3,947,533	-				+0.4
3,947,533	-				+1.3
3,947,533	-				-1.1
3,947,533	-				+1.9
3,947,533	-				-0.1
3,947,533	-				-1.7
3,947,533	-				+0.5
3,947,533	-				+0.5
3,947,533	-				-0.6
3,947,533	-				+0.2
3,947,533	-				+0.6
3,947,533	-				-0.5
3,947,546	+				-2.0
3,947,614	+		SO3795	0.19	+1.4
3,947,614	+		SO3795	0.19	-1.0
3,947,614	+		SO3795	0.19	-0.8
3,947,614	+		SO3795	0.19	+1.0
3,947,614	+		SO3795	0.19	+1.2
3,947,614	+		SO3795	0.19	-1.5
3,947,614	+		SO3795	0.19	+0.6
3,947,614	+		SO3795	0.19	-0.1
3,947,622	-		SO3795	0.20	-0.2
3,947,622	-		SO3795	0.20	-0.5
3,947,626	+		SO3795	0.21	+0.8
3,947,634	-		SO3795	0.22	-0.1
3,947,634	-		SO3795	0.22	+2.6
3,947,634	-		SO3795	0.22	-1.6
3,947,635	-		SO3795	0.22	-2.1
3,947,637	+		SO3795	0.22	-0.3
3,947,637	+		SO3795	0.22	+0.5
3,947,637	+		SO3795	0.22	-1.4
3,947,637	+		SO3795	0.22	-0.7
3,947,645	+		SO3795	0.23	+0.3
3,947,645	-		SO3795	0.23	-0.6
3,947,645	-		SO3795	0.23	-1.3
3,947,645	-		SO3795	0.23	-0.8
3,947,645	-		SO3795	0.23	-1.2
3,947,645	-		SO3795	0.23	+1.0
3,947,647	+		SO3795	0.23	+0.5
3,947,660	+		SO3795	0.25	+2.1
3,947,660	-		SO3795	0.25	-0.1
3,947,699	-		SO3795	0.30	-0.7
3,947,720	+		SO3795	0.33	+1.7
3,947,722	-		SO3795	0.33	+1.7
3,947,728	-		SO3795	0.34	+0.3
3,947,731	+		SO3795	0.35	-0.4
3,947,733	-		SO3795	0.35	+2.3
3,947,749	-		SO3795	0.37	+1.6
3,947,767	-		SO3795	0.39	-1.0
3,947,767	-		SO3795	0.39	+0.9
3,947,782	-		SO3795	0.41	+0.6
3,947,806	-		SO3795	0.44	-2.7
3,947,819	+		SO3795	0.46	+0.1
3,947,820	-		SO3795	0.46	-0.4
3,947,827	+		SO3795	0.47	+0.6
3,947,827	-		SO3795	0.47	-0.4
3,947,835	-		SO3795	0.48	+1.1
3,947,836	-		SO3795	0.48	-2.7
3,947,837	-		SO3795	0.49	+0.7
3,947,837	-		SO3795	0.49	+0.6
3,947,842	-		SO3795	0.49	-0.5
3,947,842	-		SO3795	0.49	+0.4
3,947,857	-		SO3795	0.51	-0.5
3,947,874	+		SO3795	0.54	-0.1
3,947,874	+		SO3795	0.54	-1.7
3,947,875	+		SO3795	0.54	+0.7
3,947,882	-		SO3795	0.55	-1.6
3,947,884	+		SO3795	0.55	-0.4
3,947,884	+		SO3795	0.55	+1.0
3,947,891	+		SO3795	0.56	-1.8
3,947,891	+		SO3795	0.56	+1.9
3,947,917	-		SO3795	0.59	-1.1
3,947,917	-		SO3795	0.59	-0.6
3,947,947	+		SO3795	0.63	+1.4
3,947,979	+		SO3795	0.67	+2.0
3,947,986	-		SO3795	0.68	-0.3
3,947,993	+		SO3795	0.69	+0.5
3,948,001	-		SO3795	0.70	-1.5
3,948,068	+		SO3795	0.79	+0.8
3,948,068	-		SO3795	0.79	-1.9
3,948,070	+		SO3795	0.80	-0.5
3,948,070	+		SO3795	0.80	+0.2
3,948,070	+		SO3795	0.80	-0.3
3,948,076	-		SO3795	0.80	-0.2
3,948,078	-		SO3795	0.81	-1.0
3,948,078	-		SO3795	0.81	-0.1
3,948,078	-		SO3795	0.81	-0.5
3,948,087	+		SO3795	0.82	-0.2
3,948,120	+		SO3795	0.86	+0.5
3,948,120	+		SO3795	0.86	-0.8
3,948,120	-		SO3795	0.86	-1.5
3,948,128	-		SO3795	0.87	+0.6
3,948,129	-		SO3795	0.87	-0.1
3,948,145	-		SO3795	0.90	+1.3
3,948,210	-				-0.2
3,948,262	-				+0.3
3,948,284	+				-0.1
3,948,290	+		SO3796	0.11	+1.1
3,948,295	+		SO3796	0.12	-0.3
3,948,298	-		SO3796	0.13	-0.7
3,948,298	-		SO3796	0.13	-0.8
3,948,298	-		SO3796	0.13	+1.1
3,948,298	-		SO3796	0.13	+0.5
3,948,298	-		SO3796	0.13	+1.6
3,948,320	+		SO3796	0.19	-2.7
3,948,327	+		SO3796	0.21	-0.1
3,948,335	-		SO3796	0.23	+0.7
3,948,335	-		SO3796	0.23	-1.3
3,948,335	-		SO3796	0.23	+2.2
3,948,374	+		SO3796	0.33	-0.3
3,948,382	-		SO3796	0.35	-1.5
3,948,406	+		SO3796	0.42	+0.5
3,948,414	-		SO3796	0.44	-0.3
3,948,414	-		SO3796	0.44	+2.1
3,948,414	-		SO3796	0.44	-1.7
3,948,414	-		SO3796	0.44	-0.1
3,948,415	+		SO3796	0.44	-0.2
3,948,416	+		SO3796	0.45	-1.1
3,948,416	+		SO3796	0.45	+0.9
3,948,416	+		SO3796	0.45	+2.5
3,948,423	-		SO3796	0.46	+0.5
3,948,424	-		SO3796	0.47	+0.0
3,948,424	-		SO3796	0.47	-1.3
3,948,444	+		SO3796	0.52	+0.4
3,948,444	+		SO3796	0.52	-0.2
3,948,457	-		SO3796	0.55	+1.3