Strain Fitness in Shewanella oneidensis MR-1 around SO1422

Experiment: M1 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M1 center
1,480,490	+	ifcA-1	SO1421	0.50	+1.9
1,480,527	-	ifcA-1	SO1421	0.52	+0.9
1,480,560	+	ifcA-1	SO1421	0.54	-0.9
1,480,591	-	ifcA-1	SO1421	0.56	-0.5
1,480,592	-	ifcA-1	SO1421	0.56	+0.5
1,480,592	-	ifcA-1	SO1421	0.56	+0.7
1,480,648	-	ifcA-1	SO1421	0.59	+0.4
1,480,666	-	ifcA-1	SO1421	0.60	-0.5
1,480,683	+	ifcA-1	SO1421	0.61	-1.4
1,480,749	+	ifcA-1	SO1421	0.65	-1.1
1,480,814	+	ifcA-1	SO1421	0.68	-0.5
1,480,922	+	ifcA-1	SO1421	0.75	+3.7
1,480,922	+	ifcA-1	SO1421	0.75	-0.7
1,480,924	+	ifcA-1	SO1421	0.75	+0.2
1,480,930	-	ifcA-1	SO1421	0.75	+1.2
1,480,938	+	ifcA-1	SO1421	0.75	+0.3
1,480,946	-	ifcA-1	SO1421	0.76	+0.2
1,480,948	+	ifcA-1	SO1421	0.76	+0.1
1,480,981	+	ifcA-1	SO1421	0.78	-1.4
1,481,005	+	ifcA-1	SO1421	0.79	+0.4
1,481,005	-	ifcA-1	SO1421	0.79	-1.5
1,481,018	-	ifcA-1	SO1421	0.80	-0.5
1,481,098	+	ifcA-1	SO1421	0.85	-1.0
1,481,108	+	ifcA-1	SO1421	0.85	+0.6
1,481,108	+	ifcA-1	SO1421	0.85	-1.1
1,481,108	+	ifcA-1	SO1421	0.85	+1.6
1,481,108	+	ifcA-1	SO1421	0.85	+0.5
1,481,109	+	ifcA-1	SO1421	0.85	-0.4
1,481,109	+	ifcA-1	SO1421	0.85	-1.5
1,481,109	+	ifcA-1	SO1421	0.85	+1.3
1,481,109	+	ifcA-1	SO1421	0.85	+0.6
1,481,109	+	ifcA-1	SO1421	0.85	-2.1
1,481,109	+	ifcA-1	SO1421	0.85	+2.7
1,481,109	+	ifcA-1	SO1421	0.85	-0.3
1,481,109	+	ifcA-1	SO1421	0.85	+0.4
1,481,109	+	ifcA-1	SO1421	0.85	-0.8
1,481,109	+	ifcA-1	SO1421	0.85	+1.1
1,481,109	+	ifcA-1	SO1421	0.85	-0.8
1,481,109	+	ifcA-1	SO1421	0.85	-1.3
1,481,109	+	ifcA-1	SO1421	0.85	-0.0
1,481,117	-	ifcA-1	SO1421	0.86	-1.4
1,481,117	-	ifcA-1	SO1421	0.86	+0.1
1,481,117	-	ifcA-1	SO1421	0.86	-0.9
1,481,117	-	ifcA-1	SO1421	0.86	-0.2
1,481,117	-	ifcA-1	SO1421	0.86	-1.0
1,481,117	-	ifcA-1	SO1421	0.86	-1.3
1,481,117	-	ifcA-1	SO1421	0.86	+0.2
1,481,117	-	ifcA-1	SO1421	0.86	+0.5
1,481,117	-	ifcA-1	SO1421	0.86	+1.2
1,481,117	-	ifcA-1	SO1421	0.86	-0.5
1,481,117	-	ifcA-1	SO1421	0.86	-0.3
1,481,117	-	ifcA-1	SO1421	0.86	-1.5
1,481,117	-	ifcA-1	SO1421	0.86	+1.3
1,481,117	-	ifcA-1	SO1421	0.86	+0.1
1,481,117	-	ifcA-1	SO1421	0.86	-1.8
1,481,117	-	ifcA-1	SO1421	0.86	+0.8
1,481,117	-	ifcA-1	SO1421	0.86	+0.9
1,481,117	-	ifcA-1	SO1421	0.86	+2.5
1,481,117	-	ifcA-1	SO1421	0.86	+0.1
1,481,117	-	ifcA-1	SO1421	0.86	-0.2
1,481,122	-	ifcA-1	SO1421	0.86	-1.4
1,481,122	-	ifcA-1	SO1421	0.86	-0.0
1,481,127	-	ifcA-1	SO1421	0.86	+0.2
1,481,132	+	ifcA-1	SO1421	0.86	-0.8
1,481,132	+	ifcA-1	SO1421	0.86	+0.2
1,481,132	+	ifcA-1	SO1421	0.86	-0.7
1,481,132	+	ifcA-1	SO1421	0.86	+1.2
1,481,132	+	ifcA-1	SO1421	0.86	-1.7
1,481,132	+	ifcA-1	SO1421	0.86	+2.2
1,481,132	+	ifcA-1	SO1421	0.86	+0.2
1,481,132	+	ifcA-1	SO1421	0.86	+1.0
1,481,136	-	ifcA-1	SO1421	0.87	+1.2
1,481,140	-	ifcA-1	SO1421	0.87	+0.9
1,481,140	-	ifcA-1	SO1421	0.87	+1.4
1,481,140	-	ifcA-1	SO1421	0.87	-0.5
1,481,140	-	ifcA-1	SO1421	0.87	+0.3
1,481,140	-	ifcA-1	SO1421	0.87	-0.2
1,481,140	-	ifcA-1	SO1421	0.87	-1.6
1,481,140	-	ifcA-1	SO1421	0.87	+0.2
1,481,140	-	ifcA-1	SO1421	0.87	-1.3
1,481,140	-	ifcA-1	SO1421	0.87	-2.2
1,481,140	-	ifcA-1	SO1421	0.87	-0.5
1,481,140	-	ifcA-1	SO1421	0.87	-0.1
1,481,140	-	ifcA-1	SO1421	0.87	-1.5
1,481,184	+	ifcA-1	SO1421	0.89	-0.6
1,481,184	+	ifcA-1	SO1421	0.89	-0.7
1,481,192	-	ifcA-1	SO1421	0.90	-0.8
1,481,192	-	ifcA-1	SO1421	0.90	-1.4
1,481,244	+				+0.4
1,481,252	-				-0.2
1,481,268	+				+1.0
1,481,268	+				-1.5
1,481,268	+				-0.5
1,481,276	-				+0.5
1,481,276	-				+0.3
1,481,295	+				+0.8
1,481,320	-				+0.5
1,481,368	+				-0.4
1,481,368	+				+1.5
1,481,368	+				-0.3
1,481,368	+				+0.7
1,481,368	+				-0.5
1,481,368	+				-0.1
1,481,368	+				+0.9
1,481,373	+				+1.5
1,481,373	+				-0.8
1,481,373	+				+1.4
1,481,373	+				+1.8
1,481,373	+				+3.7
1,481,376	-				-1.3
1,481,376	-				-1.4
1,481,376	-				+1.5
1,481,376	-				+1.3
1,481,376	-				+0.7
1,481,376	-				-1.0
1,481,380	+				+0.8
1,481,381	-				-0.8
1,481,382	+				-2.0
1,481,405	+				-0.2
1,481,413	-				+1.5
1,481,486	-				+0.6
1,481,487	+				-0.3
1,481,487	+				-0.9
1,481,487	+				-0.3
1,481,487	+				-0.4
1,481,493	+				+0.7
1,481,493	+				+1.8
1,481,493	+				+1.2
1,481,493	+				-0.6
1,481,493	+				+0.3
1,481,495	-				+1.3
1,481,495	-				-0.0
1,481,495	-				+0.4
1,481,495	-				+0.0
1,481,495	-				-0.8
1,481,495	-				-1.3
1,481,495	-				-0.3
1,481,496	-				-0.2
1,481,496	-				+0.4
1,481,501	-				-0.5
1,481,501	-				+0.4
1,481,501	-				+0.6
1,481,501	-				+1.6
1,481,501	-				-1.0
1,481,550	+				-0.7
1,481,550	+				-0.4
1,481,550	+				-0.2
1,481,550	+				-0.0
1,481,550	+				-1.6
1,481,550	+				+0.2
1,481,550	+				-0.5
1,481,550	+				-2.5
1,481,550	+				+0.6
1,481,550	+				+0.5
1,481,550	+				+1.7
1,481,550	+				-0.5
1,481,550	+				-1.6
1,481,550	+				-0.9
1,481,550	+				-1.5
1,481,550	+				-0.1
1,481,558	-				+0.2
1,481,558	-				+0.9
1,481,558	-				+1.8
1,481,558	-				+0.4
1,481,558	-				+1.3
1,481,558	-				+1.1
1,481,558	-				+2.9
1,481,558	-				+1.5
1,481,558	-				-0.9
1,481,558	-				+2.2
1,481,558	-				-1.5
1,481,558	-				+0.5
1,481,558	-				-2.2
1,481,558	-				+0.3
1,481,558	-				-0.3
1,481,572	+				-1.4
1,481,575	+				+1.4
1,481,577	+				+0.6
1,481,585	-		SO1422	0.10	-1.0
1,481,588	+		SO1422	0.10	+0.5
1,481,613	+		SO1422	0.13	+0.3
1,481,613	+		SO1422	0.13	+0.7
1,481,613	+		SO1422	0.13	+1.1
1,481,613	+		SO1422	0.13	+1.0
1,481,661	+		SO1422	0.18	+0.7
1,481,669	-		SO1422	0.19	+1.0
1,481,669	-		SO1422	0.19	-0.8
1,481,681	+		SO1422	0.20	-1.8
1,481,681	+		SO1422	0.20	+0.5
1,481,684	-		SO1422	0.20	-0.0
1,481,695	-		SO1422	0.22	+1.0
1,481,702	-		SO1422	0.22	+2.0
1,481,709	-		SO1422	0.23	+0.5
1,481,721	+		SO1422	0.24	-0.6
1,481,721	+		SO1422	0.24	+0.6
1,481,721	+		SO1422	0.24	+0.4
1,481,721	+		SO1422	0.24	+0.5
1,481,721	+		SO1422	0.24	-0.7
1,481,721	+		SO1422	0.24	+0.7
1,481,721	+		SO1422	0.24	-0.8
1,481,721	+		SO1422	0.24	+2.0
1,481,721	+		SO1422	0.24	-0.3
1,481,721	+		SO1422	0.24	+0.3
1,481,722	+		SO1422	0.24	+2.0
1,481,722	+		SO1422	0.24	-0.5
1,481,729	-		SO1422	0.25	-0.9
1,481,729	-		SO1422	0.25	+0.3
1,481,729	-		SO1422	0.25	+1.7
1,481,729	-		SO1422	0.25	+1.3
1,481,729	-		SO1422	0.25	+1.5
1,481,730	+		SO1422	0.25	-1.4
1,481,730	-		SO1422	0.25	+2.3
1,481,730	-		SO1422	0.25	+0.9
1,481,731	+		SO1422	0.25	+0.5
1,481,731	+		SO1422	0.25	-2.5
1,481,731	+		SO1422	0.25	+0.6
1,481,731	+		SO1422	0.25	-2.0
1,481,731	+		SO1422	0.25	+0.9
1,481,731	+		SO1422	0.25	-0.7
1,481,731	+		SO1422	0.25	+0.0
1,481,731	+		SO1422	0.25	+1.3
1,481,731	+		SO1422	0.25	+0.2
1,481,731	+		SO1422	0.25	-0.2
1,481,731	+		SO1422	0.25	-0.9
1,481,733	+		SO1422	0.26	-2.3
1,481,733	+		SO1422	0.26	-1.8
1,481,733	+		SO1422	0.26	+0.5
1,481,738	-		SO1422	0.26	+1.0
1,481,739	-		SO1422	0.26	-0.3
1,481,739	-		SO1422	0.26	+0.0
1,481,739	-		SO1422	0.26	-2.0
1,481,739	-		SO1422	0.26	+2.5
1,481,739	-		SO1422	0.26	+0.9
1,481,744	-		SO1422	0.27	+0.8
1,481,744	-		SO1422	0.27	-1.8
1,481,746	-		SO1422	0.27	+0.7
1,481,750	+		SO1422	0.27	+0.4
1,481,756	-		SO1422	0.28	-0.5
1,481,815	+		SO1422	0.34	+1.1
1,481,815	+		SO1422	0.34	+2.2
1,481,815	+		SO1422	0.34	+0.2
1,481,815	+		SO1422	0.34	-0.5
1,481,815	+		SO1422	0.34	+0.6
1,481,815	+		SO1422	0.34	+0.3
1,481,815	+		SO1422	0.34	+1.0
1,481,815	+		SO1422	0.34	-0.0
1,481,815	+		SO1422	0.34	+0.4
1,481,815	+		SO1422	0.34	-1.4
1,481,815	+		SO1422	0.34	-0.0
1,481,823	-		SO1422	0.35	+1.0
1,481,823	-		SO1422	0.35	-0.9
1,481,823	-		SO1422	0.35	-1.3
1,481,823	-		SO1422	0.35	-0.0
1,481,825	+		SO1422	0.35	-1.0
1,481,874	+		SO1422	0.40	-0.4
1,481,874	+		SO1422	0.40	+1.1
1,481,882	-		SO1422	0.41	+0.2
1,481,893	+		SO1422	0.42	-1.3
1,481,903	+		SO1422	0.43	+0.8
1,481,903	+		SO1422	0.43	-1.6
1,481,920	+		SO1422	0.45	+1.4
1,481,920	+		SO1422	0.45	+0.4
1,481,920	+		SO1422	0.45	+1.7
1,481,920	+		SO1422	0.45	-1.3
1,481,921	+		SO1422	0.45	-0.6
1,481,928	+		SO1422	0.46	+0.1
1,481,928	+		SO1422	0.46	+0.5
1,481,928	+		SO1422	0.46	+0.1
1,481,928	+		SO1422	0.46	-0.7
1,481,928	+		SO1422	0.46	+1.9
1,481,929	-		SO1422	0.46	+0.5
1,481,935	-		SO1422	0.47	+0.1
1,481,935	-		SO1422	0.47	-0.2
1,481,935	-		SO1422	0.47	-1.4
1,481,935	-		SO1422	0.47	+0.9
1,481,935	-		SO1422	0.47	-1.4
1,481,936	-		SO1422	0.47	-2.5
1,481,947	+		SO1422	0.48	-2.0
1,481,947	+		SO1422	0.48	-1.4
1,481,955	-		SO1422	0.49	+1.2
1,481,955	-		SO1422	0.49	+0.3
1,481,955	-		SO1422	0.49	-1.1
1,481,955	-		SO1422	0.49	+1.7
1,481,955	-		SO1422	0.49	+1.1
1,482,045	-		SO1422	0.58	+0.5
1,482,049	+		SO1422	0.59	-0.5
1,482,049	+		SO1422	0.59	-0.8
1,482,049	-		SO1422	0.59	+0.6
1,482,083	-		SO1422	0.62	+1.1
1,482,128	+		SO1422	0.67	-0.8
1,482,128	+		SO1422	0.67	+0.2
1,482,133	+		SO1422	0.68	-1.0
1,482,133	+		SO1422	0.68	-1.6
1,482,136	-		SO1422	0.68	-1.5
1,482,165	+		SO1422	0.71	-0.3
1,482,176	+		SO1422	0.72	+1.8
1,482,179	+		SO1422	0.72	+0.7
1,482,179	+		SO1422	0.72	+0.3
1,482,179	+		SO1422	0.72	-1.5
1,482,179	+		SO1422	0.72	+0.9
1,482,179	+		SO1422	0.72	+0.4
1,482,179	+		SO1422	0.72	-2.4
1,482,179	+		SO1422	0.72	-1.5
1,482,179	+		SO1422	0.72	+0.9
1,482,186	+		SO1422	0.73	-2.5
1,482,187	-		SO1422	0.73	+0.5
1,482,187	-		SO1422	0.73	-0.3
1,482,191	+		SO1422	0.74	-1.0
1,482,191	+		SO1422	0.74	-0.2
1,482,191	+		SO1422	0.74	-1.0
1,482,191	+		SO1422	0.74	-0.0
1,482,191	+		SO1422	0.74	-1.6
1,482,191	+		SO1422	0.74	-1.4
1,482,191	+		SO1422	0.74	-0.3
1,482,197	+		SO1422	0.74	-0.2
1,482,199	-		SO1422	0.74	+0.7
1,482,199	-		SO1422	0.74	-1.5
1,482,199	-		SO1422	0.74	+1.1
1,482,199	-		SO1422	0.74	+0.4
1,482,205	-		SO1422	0.75	-1.4
1,482,219	+		SO1422	0.77	-1.1
1,482,226	+		SO1422	0.77	+2.9
1,482,232	+		SO1422	0.78	-0.5
1,482,243	+		SO1422	0.79	-0.8
1,482,285	-		SO1422	0.83	-0.5
1,482,296	+		SO1422	0.85	-0.4
1,482,296	+		SO1422	0.85	+0.5
1,482,296	+		SO1422	0.85	-1.0
1,482,298	+		SO1422	0.85	-0.6
1,482,301	+		SO1422	0.85	+1.0
1,482,301	+		SO1422	0.85	-0.8
1,482,301	+		SO1422	0.85	+0.7
1,482,301	+		SO1422	0.85	+2.2
1,482,301	+		SO1422	0.85	+1.0
1,482,301	+		SO1422	0.85	-0.4
1,482,301	+		SO1422	0.85	+1.4
1,482,301	+		SO1422	0.85	+1.5
1,482,301	+		SO1422	0.85	+1.1
1,482,301	+		SO1422	0.85	+0.7
1,482,306	+		SO1422	0.86	+0.6
1,482,306	+		SO1422	0.86	+1.0
1,482,306	+		SO1422	0.86	-1.2
1,482,306	+		SO1422	0.86	+0.1
1,482,306	+		SO1422	0.86	-0.3
1,482,306	+		SO1422	0.86	+1.6
1,482,306	+		SO1422	0.86	-0.7
1,482,309	-		SO1422	0.86	-0.3
1,482,309	-		SO1422	0.86	-2.0
1,482,309	-		SO1422	0.86	-2.0
1,482,309	-		SO1422	0.86	+2.5
1,482,309	-		SO1422	0.86	-0.6
1,482,314	-		SO1422	0.86	+0.4
1,482,314	-		SO1422	0.86	+0.2
1,482,314	-		SO1422	0.86	+0.3
1,482,314	-		SO1422	0.86	+0.2
1,482,314	-		SO1422	0.86	+1.1
1,482,315	+		SO1422	0.87	-0.2
1,482,319	+		SO1422	0.87	-1.6
1,482,323	-		SO1422	0.87	-0.6
1,482,323	-		SO1422	0.87	-2.2
1,482,325	+		SO1422	0.88	+0.8
1,482,325	+		SO1422	0.88	+0.3
1,482,329	-		SO1422	0.88	+0.4
1,482,333	-		SO1422	0.88	-1.9
1,482,336	+		SO1422	0.89	+1.7
1,482,336	+		SO1422	0.89	+1.9
1,482,336	+		SO1422	0.89	-0.8
1,482,336	+		SO1422	0.89	-0.3
1,482,336	+		SO1422	0.89	-0.3
1,482,336	+		SO1422	0.89	-0.8
1,482,344	-		SO1422	0.90	-1.5
1,482,344	-		SO1422	0.90	+1.6
1,482,344	-		SO1422	0.90	-0.2
1,482,344	-		SO1422	0.90	+1.4
1,482,344	-		SO1422	0.90	+0.7
1,482,344	-		SO1422	0.90	-0.7
1,482,344	-		SO1422	0.90	-0.5
1,482,344	-		SO1422	0.90	+2.9
1,482,344	-		SO1422	0.90	+1.3
1,482,345	-		SO1422	0.90	+0.5
1,482,345	-		SO1422	0.90	+0.5
1,482,364	-				+0.8
1,482,399	-				-0.0
1,482,400	+				-0.4
1,482,420	+				+1.3
1,482,470	+				-0.2
1,482,470	+				+0.2
1,482,478	+				-2.4
1,482,478	-				+0.1
1,482,583	-				-1.6
1,482,590	-				+1.7
1,482,664	+				+2.4
1,482,664	+				-0.6
1,482,664	+				-0.1
1,482,664	+				+1.2
1,482,664	+				+1.0
1,482,672	-				+0.2
1,482,672	-				-1.5
1,482,672	-				-0.0
1,482,672	-				-0.4
1,482,672	-				+0.6
1,482,672	-				+0.7
1,482,672	-				+2.6
1,482,702	+				+0.8
1,482,702	+				-1.0
1,482,710	+				+0.2
1,482,710	-				-0.5
1,482,718	-				-0.8
1,482,731	-				-1.5
1,482,776	+				+0.2
1,482,792	+				+0.5
1,482,792	+				-0.6
1,482,792	+				-1.8
1,482,800	-				-0.8
1,482,800	-				+1.6
1,482,805	+				-0.1
1,482,812	+				+2.5
1,482,812	+				+0.4
1,482,812	+				-1.7
1,482,812	+				+1.3
1,482,820	-				+0.5
1,482,820	-				+0.9
1,482,821	-				-0.3
1,482,838	-				-1.4
1,482,877	+				-0.8
1,482,892	+				-1.7
1,482,892	+				+1.4
1,482,892	+				-0.7
1,482,892	+				-0.4
1,482,892	+				-1.2
1,482,892	+				-1.0
1,482,892	+				-1.1
1,482,900	-				+0.4
1,482,900	-				+0.6
1,482,900	-				+0.5
1,482,900	-				+1.0
1,482,900	-				-0.3
1,482,900	-				+0.0
1,482,900	-				-0.2
1,482,900	-				+0.3
1,482,900	-				+1.7
1,482,925	+				-0.6
1,482,971	-		SO1424	0.12	+0.9
1,482,993	-		SO1424	0.13	-0.3
1,482,995	+		SO1424	0.13	+1.9
1,483,002	-		SO1424	0.13	+1.6
1,483,091	+		SO1424	0.17	-0.3
1,483,135	+		SO1424	0.19	+0.4
1,483,166	-		SO1424	0.21	-1.0
1,483,173	+		SO1424	0.21	+0.4
1,483,191	-		SO1424	0.22	-1.5
1,483,192	-		SO1424	0.22	+0.3
1,483,192	-		SO1424	0.22	+0.3
1,483,204	+		SO1424	0.22	-0.4
1,483,207	-		SO1424	0.22	+0.7
1,483,207	-		SO1424	0.22	-0.4
1,483,210	+		SO1424	0.23	+1.3
1,483,273	+		SO1424	0.25	+0.3
1,483,357	+		SO1424	0.29	+0.1
1,483,365	-		SO1424	0.29	+2.0
1,483,367	+		SO1424	0.30	+1.1
1,483,370	-		SO1424	0.30	+0.3
1,483,370	-		SO1424	0.30	+0.6
1,483,378	-		SO1424	0.30	+0.6
1,483,414	+		SO1424	0.32	-1.2
1,483,426	+		SO1424	0.32	+1.0
1,483,441	-		SO1424	0.33	+1.2