Experiment: M1 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0823 and SO0824 are separated by 204 nucleotides SO0824 and SO0826 are separated by 422 nucleotides SO0826 and lldP are separated by 700 nucleotides
SO0823: SO0823 - conserved hypothetical protein (NCBI ptt file), at 839,663 to 840,787
SO0823
SO0824: SO0824 - conserved hypothetical protein (NCBI ptt file), at 840,992 to 841,354
SO0824
SO0826: SO0826 - conserved hypothetical protein (NCBI ptt file), at 841,777 to 843,468
SO0826
SO0827: lldP - propionate/L-lactate/D-lactate transporter <small>(from data)</small>, at 844,169 to 845,806
lldP
Position (kb) 841
842
843
844 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 840.779 kb on - strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.779 kb on - strand at 840.894 kb on - strand at 840.900 kb on + strand at 840.958 kb on + strand at 840.966 kb on - strand at 841.005 kb on - strand at 841.140 kb on + strand, within SO0824 at 841.183 kb on + strand, within SO0824 at 841.191 kb on - strand, within SO0824 at 841.293 kb on + strand, within SO0824 at 841.293 kb on + strand, within SO0824 at 841.293 kb on + strand, within SO0824 at 841.295 kb on + strand, within SO0824 at 841.301 kb on - strand, within SO0824 at 841.321 kb on + strand at 841.321 kb on + strand at 841.407 kb on - strand at 841.452 kb on - strand at 841.457 kb on - strand at 841.485 kb on - strand at 841.721 kb on + strand at 841.796 kb on + strand at 841.804 kb on - strand at 841.888 kb on - strand at 841.971 kb on + strand, within SO0826 at 841.985 kb on + strand, within SO0826 at 842.050 kb on - strand, within SO0826 at 842.150 kb on - strand, within SO0826 at 842.186 kb on + strand, within SO0826 at 842.247 kb on + strand, within SO0826 at 842.414 kb on + strand, within SO0826 at 842.440 kb on - strand, within SO0826 at 842.518 kb on - strand, within SO0826 at 842.551 kb on - strand, within SO0826 at 842.578 kb on - strand, within SO0826 at 842.610 kb on + strand, within SO0826 at 842.625 kb on + strand, within SO0826 at 842.628 kb on - strand, within SO0826 at 842.638 kb on - strand, within SO0826 at 842.645 kb on + strand, within SO0826 at 842.645 kb on + strand, within SO0826 at 842.653 kb on - strand, within SO0826 at 842.653 kb on - strand, within SO0826 at 842.653 kb on - strand, within SO0826 at 842.653 kb on - strand, within SO0826 at 842.671 kb on + strand, within SO0826 at 842.686 kb on + strand, within SO0826 at 842.701 kb on + strand, within SO0826 at 842.764 kb on - strand, within SO0826 at 842.807 kb on + strand, within SO0826 at 842.830 kb on + strand, within SO0826 at 842.830 kb on + strand, within SO0826 at 842.830 kb on - strand, within SO0826 at 842.936 kb on - strand, within SO0826 at 842.944 kb on + strand, within SO0826 at 842.971 kb on + strand, within SO0826 at 842.971 kb on - strand, within SO0826 at 842.972 kb on - strand, within SO0826 at 842.972 kb on - strand, within SO0826 at 843.088 kb on + strand, within SO0826 at 843.150 kb on - strand, within SO0826 at 843.162 kb on - strand, within SO0826 at 843.165 kb on - strand, within SO0826 at 843.183 kb on - strand, within SO0826 at 843.198 kb on - strand, within SO0826 at 843.198 kb on - strand, within SO0826 at 843.260 kb on + strand, within SO0826 at 843.390 kb on - strand at 843.439 kb on + strand at 843.445 kb on - strand at 843.453 kb on + strand at 843.453 kb on + strand at 843.461 kb on - strand at 843.461 kb on - strand at 843.461 kb on - strand at 843.856 kb on - strand at 843.898 kb on - strand at 843.920 kb on + strand at 844.019 kb on - strand at 844.042 kb on - strand at 844.143 kb on + strand at 844.143 kb on + strand at 844.151 kb on - strand at 844.151 kb on - strand at 844.198 kb on + strand at 844.198 kb on + strand at 844.199 kb on + strand at 844.203 kb on + strand at 844.211 kb on + strand at 844.211 kb on - strand at 844.218 kb on + strand at 844.224 kb on - strand at 844.226 kb on - strand at 844.259 kb on + strand at 844.266 kb on - strand at 844.301 kb on + strand at 844.301 kb on + strand at 844.309 kb on - strand at 844.309 kb on - strand at 844.309 kb on - strand at 844.316 kb on + strand at 844.321 kb on + strand at 844.324 kb on - strand at 844.353 kb on + strand, within lldP at 844.360 kb on + strand, within lldP at 844.362 kb on + strand, within lldP at 844.362 kb on + strand, within lldP at 844.362 kb on + strand, within lldP at 844.362 kb on + strand, within lldP at 844.362 kb on + strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.370 kb on - strand, within lldP at 844.388 kb on + strand, within lldP at 844.395 kb on - strand, within lldP at 844.395 kb on - strand, within lldP at 844.403 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.421 kb on + strand, within lldP at 844.424 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.429 kb on - strand, within lldP at 844.444 kb on - strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.457 kb on + strand, within lldP at 844.464 kb on - strand, within lldP at 844.465 kb on - strand, within lldP at 844.465 kb on - strand, within lldP at 844.465 kb on - strand, within lldP at 844.465 kb on - strand, within lldP at 844.465 kb on - strand, within lldP at 844.465 kb on - strand, within lldP at 844.467 kb on + strand, within lldP
Per-strain Table
Position Strand Gene LocusTag Fraction M1 center remove 840,779 - +0.3 840,779 - +3.2 840,779 - -0.9 840,779 - +0.1 840,779 - -2.8 840,894 - +1.2 840,900 + -0.2 840,958 + -0.2 840,966 - -0.6 841,005 - +0.3 841,140 + SO0824 0.41 -0.2 841,183 + SO0824 0.53 -2.3 841,191 - SO0824 0.55 -0.5 841,293 + SO0824 0.83 +0.8 841,293 + SO0824 0.83 +1.2 841,293 + SO0824 0.83 +1.3 841,295 + SO0824 0.83 +0.3 841,301 - SO0824 0.85 -0.2 841,321 + -1.5 841,321 + +0.7 841,407 - +0.4 841,452 - +0.1 841,457 - +0.5 841,485 - +1.2 841,721 + -1.0 841,796 + +0.9 841,804 - -2.0 841,888 - -2.5 841,971 + SO0826 0.11 -1.1 841,985 + SO0826 0.12 +1.2 842,050 - SO0826 0.16 +0.0 842,150 - SO0826 0.22 +0.3 842,186 + SO0826 0.24 +0.3 842,247 + SO0826 0.28 +0.6 842,414 + SO0826 0.38 +2.0 842,440 - SO0826 0.39 +1.3 842,518 - SO0826 0.44 +2.2 842,551 - SO0826 0.46 -0.1 842,578 - SO0826 0.47 -1.9 842,610 + SO0826 0.49 +0.2 842,625 + SO0826 0.50 +0.6 842,628 - SO0826 0.50 +0.2 842,638 - SO0826 0.51 +0.3 842,645 + SO0826 0.51 -1.6 842,645 + SO0826 0.51 +0.8 842,653 - SO0826 0.52 +1.5 842,653 - SO0826 0.52 -1.4 842,653 - SO0826 0.52 -1.5 842,653 - SO0826 0.52 +0.6 842,671 + SO0826 0.53 +1.0 842,686 + SO0826 0.54 -0.1 842,701 + SO0826 0.55 -0.6 842,764 - SO0826 0.58 +1.0 842,807 + SO0826 0.61 -0.7 842,830 + SO0826 0.62 +0.8 842,830 + SO0826 0.62 +0.1 842,830 - SO0826 0.62 +0.2 842,936 - SO0826 0.68 -0.4 842,944 + SO0826 0.69 -0.5 842,971 + SO0826 0.71 -1.5 842,971 - SO0826 0.71 +0.8 842,972 - SO0826 0.71 +0.5 842,972 - SO0826 0.71 -1.8 843,088 + SO0826 0.77 +0.2 843,150 - SO0826 0.81 +1.7 843,162 - SO0826 0.82 -1.3 843,165 - SO0826 0.82 -1.6 843,183 - SO0826 0.83 +0.1 843,198 - SO0826 0.84 +1.4 843,198 - SO0826 0.84 +2.2 843,260 + SO0826 0.88 +1.2 843,390 - +0.1 843,439 + -0.3 843,445 - +0.3 843,453 + +1.7 843,453 + +0.4 843,461 - +0.7 843,461 - +0.8 843,461 - -0.7 843,856 - -0.8 843,898 - -2.3 843,920 + -0.5 844,019 - +0.4 844,042 - -0.9 844,143 + +0.5 844,143 + -2.5 844,151 - -0.7 844,151 - +1.8 844,198 + -0.7 844,198 + +2.6 844,199 + -0.7 844,203 + +0.5 844,211 + +1.9 844,211 - -0.3 844,218 + +0.8 844,224 - +1.9 844,226 - +0.4 844,259 + +0.0 844,266 - +1.0 844,301 + -0.4 844,301 + -0.2 844,309 - +1.3 844,309 - -2.2 844,309 - +0.3 844,316 + -2.2 844,321 + -2.3 844,324 - -0.4 844,353 + lldP SO0827 0.11 -0.5 844,360 + lldP SO0827 0.12 +1.0 844,362 + lldP SO0827 0.12 -1.9 844,362 + lldP SO0827 0.12 -0.4 844,362 + lldP SO0827 0.12 -0.4 844,362 + lldP SO0827 0.12 -1.7 844,362 + lldP SO0827 0.12 -0.7 844,370 - lldP SO0827 0.12 -1.8 844,370 - lldP SO0827 0.12 -1.0 844,370 - lldP SO0827 0.12 +0.4 844,370 - lldP SO0827 0.12 -0.3 844,370 - lldP SO0827 0.12 +0.6 844,370 - lldP SO0827 0.12 -0.3 844,370 - lldP SO0827 0.12 -1.0 844,370 - lldP SO0827 0.12 -1.5 844,388 + lldP SO0827 0.13 +0.9 844,395 - lldP SO0827 0.14 -1.8 844,395 - lldP SO0827 0.14 -0.0 844,403 + lldP SO0827 0.14 -1.2 844,421 + lldP SO0827 0.15 -1.3 844,421 + lldP SO0827 0.15 +0.5 844,421 + lldP SO0827 0.15 -2.1 844,421 + lldP SO0827 0.15 +0.3 844,421 + lldP SO0827 0.15 +0.3 844,421 + lldP SO0827 0.15 -2.9 844,421 + lldP SO0827 0.15 +0.8 844,421 + lldP SO0827 0.15 -0.1 844,421 + lldP SO0827 0.15 +1.0 844,421 + lldP SO0827 0.15 -0.9 844,421 + lldP SO0827 0.15 +0.7 844,424 - lldP SO0827 0.16 -0.9 844,429 - lldP SO0827 0.16 -1.2 844,429 - lldP SO0827 0.16 +0.6 844,429 - lldP SO0827 0.16 -2.5 844,429 - lldP SO0827 0.16 -0.2 844,429 - lldP SO0827 0.16 +0.4 844,429 - lldP SO0827 0.16 +0.6 844,429 - lldP SO0827 0.16 -1.7 844,429 - lldP SO0827 0.16 -2.5 844,429 - lldP SO0827 0.16 -1.3 844,444 - lldP SO0827 0.17 +0.3 844,457 + lldP SO0827 0.18 +1.1 844,457 + lldP SO0827 0.18 +0.4 844,457 + lldP SO0827 0.18 +1.4 844,457 + lldP SO0827 0.18 -0.9 844,457 + lldP SO0827 0.18 +1.3 844,457 + lldP SO0827 0.18 +2.6 844,457 + lldP SO0827 0.18 -1.1 844,457 + lldP SO0827 0.18 +1.0 844,457 + lldP SO0827 0.18 +1.5 844,464 - lldP SO0827 0.18 +2.6 844,465 - lldP SO0827 0.18 -0.2 844,465 - lldP SO0827 0.18 -0.0 844,465 - lldP SO0827 0.18 -0.7 844,465 - lldP SO0827 0.18 -1.3 844,465 - lldP SO0827 0.18 -0.5 844,465 - lldP SO0827 0.18 -1.2 844,467 + lldP SO0827 0.18 +1.3
Or see this region's nucleotide sequence