Experiment: M1 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0819 and SO0820 are separated by 330 nucleotides SO0820 and SO0821 are separated by 2 nucleotides
SO0819: SO0819 - ISSod11, transposase (NCBI ptt file), at 833,685 to 834,641
SO0819
SO0820: SO0820 - HlyD family secretion protein (NCBI ptt file), at 834,972 to 836,189
SO0820
SO0821: SO0821 - ABC transporter, ATP-binding/permease protein (NCBI ptt file), at 836,192 to 838,162
SO0821
Position (kb) 834
835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 834.737 kb on + strand at 834.781 kb on + strand at 834.816 kb on - strand at 834.816 kb on - strand at 834.823 kb on + strand at 834.831 kb on - strand at 834.870 kb on - strand at 834.935 kb on - strand at 835.023 kb on - strand at 835.068 kb on + strand at 835.086 kb on - strand at 835.124 kb on + strand at 835.132 kb on - strand, within SO0820 at 835.203 kb on - strand, within SO0820 at 835.308 kb on + strand at 835.308 kb on + strand, within SO0820 at 835.308 kb on + strand, within SO0820 at 835.308 kb on + strand, within SO0820 at 835.308 kb on + strand, within SO0820 at 835.311 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.544 kb on - strand, within SO0820 at 835.553 kb on + strand, within SO0820 at 835.559 kb on - strand, within SO0820 at 835.575 kb on + strand, within SO0820 at 835.582 kb on + strand, within SO0820 at 835.728 kb on - strand, within SO0820 at 835.744 kb on + strand, within SO0820 at 835.744 kb on + strand, within SO0820 at 835.744 kb on + strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.753 kb on + strand, within SO0820 at 835.833 kb on + strand, within SO0820 at 835.889 kb on + strand, within SO0820 at 835.918 kb on - strand, within SO0820 at 835.923 kb on + strand, within SO0820 at 835.925 kb on + strand, within SO0820 at 835.956 kb on - strand, within SO0820 at 835.961 kb on + strand, within SO0820 at 836.113 kb on + strand at 836.121 kb on - strand at 836.202 kb on - strand at 836.232 kb on + strand at 836.301 kb on - strand at 836.319 kb on + strand at 836.342 kb on - strand at 836.359 kb on - strand at 836.399 kb on + strand, within SO0821 at 836.519 kb on - strand, within SO0821 at 836.555 kb on + strand, within SO0821 at 836.555 kb on + strand, within SO0821 at 836.626 kb on + strand, within SO0821 at 836.850 kb on + strand, within SO0821 at 836.858 kb on - strand, within SO0821 at 836.877 kb on - strand, within SO0821 at 836.906 kb on + strand, within SO0821 at 836.909 kb on + strand, within SO0821 at 836.917 kb on - strand, within SO0821 at 836.939 kb on + strand, within SO0821 at 836.969 kb on - strand, within SO0821 at 837.095 kb on - strand, within SO0821 at 837.152 kb on + strand, within SO0821 at 837.152 kb on + strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.177 kb on + strand, within SO0821
Per-strain Table
Position Strand Gene LocusTag Fraction M1 center remove 834,737 + -0.6 834,781 + -0.2 834,816 - -2.1 834,816 - +1.3 834,823 + -0.8 834,831 - -1.7 834,870 - +0.2 834,935 - -0.1 835,023 - -0.3 835,068 + -2.1 835,086 - -0.7 835,124 + +1.6 835,132 - SO0820 0.13 +1.9 835,203 - SO0820 0.19 -0.4 835,308 + +0.0 835,308 + SO0820 0.28 +0.0 835,308 + SO0820 0.28 -0.9 835,308 + SO0820 0.28 +3.2 835,308 + SO0820 0.28 -0.1 835,311 - SO0820 0.28 +1.5 835,316 - SO0820 0.28 +3.0 835,316 - SO0820 0.28 +2.4 835,316 - SO0820 0.28 -0.6 835,316 - SO0820 0.28 -0.3 835,316 - SO0820 0.28 +0.1 835,544 - SO0820 0.47 -1.2 835,553 + SO0820 0.48 -0.7 835,559 - SO0820 0.48 +2.0 835,575 + SO0820 0.50 -0.5 835,582 + SO0820 0.50 -1.1 835,728 - SO0820 0.62 -0.6 835,744 + SO0820 0.63 +1.8 835,744 + SO0820 0.63 -1.9 835,744 + SO0820 0.63 -2.6 835,752 - SO0820 0.64 -1.2 835,752 - SO0820 0.64 -0.6 835,752 - SO0820 0.64 +1.5 835,752 - SO0820 0.64 -0.2 835,753 + SO0820 0.64 -2.1 835,833 + SO0820 0.71 +1.4 835,889 + SO0820 0.75 -0.5 835,918 - SO0820 0.78 -0.6 835,923 + SO0820 0.78 -0.6 835,925 + SO0820 0.78 +0.8 835,956 - SO0820 0.81 -0.6 835,961 + SO0820 0.81 +1.6 836,113 + +0.7 836,121 - +0.3 836,202 - +0.1 836,232 + -0.9 836,301 - +0.5 836,319 + +1.3 836,342 - -1.1 836,359 - +0.6 836,399 + SO0821 0.11 -0.0 836,519 - SO0821 0.17 -0.6 836,555 + SO0821 0.18 -0.7 836,555 + SO0821 0.18 +0.1 836,626 + SO0821 0.22 -0.0 836,850 + SO0821 0.33 -2.1 836,858 - SO0821 0.34 +2.6 836,877 - SO0821 0.35 +0.6 836,906 + SO0821 0.36 -2.4 836,909 + SO0821 0.36 +0.5 836,917 - SO0821 0.37 -1.5 836,939 + SO0821 0.38 +1.4 836,969 - SO0821 0.39 +2.2 837,095 - SO0821 0.46 +1.2 837,152 + SO0821 0.49 -0.7 837,152 + SO0821 0.49 -2.0 837,160 - SO0821 0.49 -0.6 837,160 - SO0821 0.49 -0.6 837,160 - SO0821 0.49 +0.1 837,160 - SO0821 0.49 -1.9 837,177 + SO0821 0.50 +0.2
Or see this region's nucleotide sequence