Experiment: M1 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fpr and SO0748 are separated by 122 nucleotides SO0748 and SO0749 are separated by 107 nucleotides SO0749 and SO0750 are separated by 11 nucleotides
SO0747: fpr - ferredoxin--NADP reductase (NCBI ptt file), at 764,597 to 765,346
fpr
SO0748: SO0748 - hypothetical protein (NCBI ptt file), at 765,469 to 766,146
SO0748
SO0749: SO0749 - conserved hypothetical protein (NCBI ptt file), at 766,254 to 766,847
SO0749
SO0750: SO0750 - glutamate synthase, putative (NCBI ptt file), at 766,859 to 768,349
SO0750
Position (kb) 766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.383 kb on + strand at 765.426 kb on + strand at 765.453 kb on + strand at 765.475 kb on - strand at 765.475 kb on - strand at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.599 kb on - strand, within SO0748 at 765.614 kb on - strand, within SO0748 at 765.614 kb on - strand, within SO0748 at 765.743 kb on + strand, within SO0748 at 765.745 kb on - strand, within SO0748 at 765.754 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.030 kb on + strand, within SO0748 at 766.035 kb on + strand, within SO0748 at 766.038 kb on - strand, within SO0748 at 766.152 kb on - strand at 766.216 kb on - strand at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.371 kb on - strand, within SO0749 at 766.371 kb on - strand, within SO0749 at 766.371 kb on - strand, within SO0749 at 766.456 kb on + strand, within SO0749 at 766.496 kb on - strand, within SO0749 at 766.560 kb on + strand, within SO0749 at 766.700 kb on + strand, within SO0749 at 766.708 kb on - strand, within SO0749 at 766.708 kb on - strand, within SO0749 at 766.839 kb on + strand at 766.845 kb on - strand at 766.946 kb on + strand at 767.098 kb on - strand, within SO0750 at 767.120 kb on - strand, within SO0750 at 767.120 kb on - strand, within SO0750 at 767.172 kb on + strand, within SO0750 at 767.180 kb on - strand, within SO0750 at 767.351 kb on + strand, within SO0750 at 767.357 kb on - strand, within SO0750 at 767.359 kb on - strand, within SO0750 at 767.359 kb on - strand, within SO0750 at 767.372 kb on - strand, within SO0750 at 767.394 kb on - strand, within SO0750 at 767.406 kb on + strand, within SO0750 at 767.415 kb on - strand, within SO0750 at 767.430 kb on - strand, within SO0750 at 767.430 kb on - strand, within SO0750 at 767.462 kb on + strand, within SO0750 at 767.462 kb on + strand, within SO0750 at 767.601 kb on + strand, within SO0750 at 767.609 kb on - strand, within SO0750 at 767.637 kb on + strand, within SO0750 at 767.654 kb on + strand, within SO0750 at 767.831 kb on - strand, within SO0750
Per-strain Table
Position Strand Gene LocusTag Fraction M1 center remove 765,383 + +1.4 765,426 + -2.4 765,453 + +0.8 765,475 - -2.1 765,475 - +0.0 765,584 - SO0748 0.17 +1.4 765,584 - SO0748 0.17 +0.9 765,584 - SO0748 0.17 -1.6 765,584 - SO0748 0.17 +0.0 765,599 - SO0748 0.19 +1.6 765,614 - SO0748 0.21 -1.0 765,614 - SO0748 0.21 +0.4 765,743 + SO0748 0.40 -0.9 765,745 - SO0748 0.41 +0.4 765,754 + SO0748 0.42 -1.0 766,025 + SO0748 0.82 -0.2 766,025 + SO0748 0.82 -1.2 766,025 + SO0748 0.82 +0.0 766,030 + SO0748 0.83 -1.0 766,035 + SO0748 0.83 +0.7 766,038 - SO0748 0.84 -0.4 766,152 - +0.0 766,216 - -0.1 766,363 + SO0749 0.18 -0.5 766,363 + SO0749 0.18 +0.5 766,363 + SO0749 0.18 +1.0 766,363 + SO0749 0.18 +1.2 766,363 + SO0749 0.18 +0.2 766,363 + SO0749 0.18 -1.2 766,371 - SO0749 0.20 +0.4 766,371 - SO0749 0.20 -0.7 766,371 - SO0749 0.20 +0.0 766,456 + SO0749 0.34 -0.2 766,496 - SO0749 0.41 +0.2 766,560 + SO0749 0.52 +2.3 766,700 + SO0749 0.75 +0.9 766,708 - SO0749 0.76 -0.3 766,708 - SO0749 0.76 -0.2 766,839 + -1.3 766,845 - +0.3 766,946 + +1.2 767,098 - SO0750 0.16 -1.4 767,120 - SO0750 0.18 -0.4 767,120 - SO0750 0.18 -1.8 767,172 + SO0750 0.21 +0.9 767,180 - SO0750 0.22 +0.2 767,351 + SO0750 0.33 -2.8 767,357 - SO0750 0.33 +0.6 767,359 - SO0750 0.34 -0.5 767,359 - SO0750 0.34 -1.0 767,372 - SO0750 0.34 +1.6 767,394 - SO0750 0.36 +0.3 767,406 + SO0750 0.37 -0.3 767,415 - SO0750 0.37 -1.7 767,430 - SO0750 0.38 -0.2 767,430 - SO0750 0.38 +0.5 767,462 + SO0750 0.40 -1.2 767,462 + SO0750 0.40 +1.3 767,601 + SO0750 0.50 -2.7 767,609 - SO0750 0.50 +1.0 767,637 + SO0750 0.52 -1.6 767,654 + SO0750 0.53 +2.0 767,831 - SO0750 0.65 -0.9
Or see this region's nucleotide sequence