Experiment: M1 center
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt speF and SO0316 are separated by 964 nucleotides SO0316 and SO0317 are separated by 17 nucleotides SO0317 and SO0318 are separated by 31 nucleotides
SO0314: speF - ornithine decarboxylase, inducible (NCBI ptt file), at 320,226 to 322,388
speF
SO0316: SO0316 - hypothetical phosphatidylethanolamine-binding protein (NCBI ptt file), at 323,353 to 323,832
SO0316
SO0317: SO0317 - transcriptional regulator, AraC/XylS family (NCBI ptt file), at 323,850 to 324,608
SO0317
SO0318: SO0318 - conserved hypothetical protein (NCBI ptt file), at 324,640 to 324,990
SO0318
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.373 kb on + strand at 322.381 kb on - strand at 322.415 kb on + strand at 322.415 kb on + strand at 322.423 kb on - strand at 322.423 kb on - strand at 322.425 kb on + strand at 322.428 kb on - strand at 322.428 kb on - strand at 322.432 kb on + strand at 322.432 kb on + strand at 322.432 kb on + strand at 322.432 kb on + strand at 322.433 kb on - strand at 322.433 kb on - strand at 322.440 kb on - strand at 322.440 kb on - strand at 322.440 kb on - strand at 322.440 kb on - strand at 322.440 kb on - strand at 322.440 kb on - strand at 322.475 kb on + strand at 322.475 kb on + strand at 322.483 kb on - strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.492 kb on + strand at 322.498 kb on - strand at 322.500 kb on - strand at 322.500 kb on - strand at 322.500 kb on - strand at 322.500 kb on - strand at 322.500 kb on - strand at 322.503 kb on + strand at 322.511 kb on - strand at 322.533 kb on + strand at 322.533 kb on + strand at 322.545 kb on + strand at 322.561 kb on + strand at 322.563 kb on + strand at 322.563 kb on + strand at 322.571 kb on - strand at 322.571 kb on - strand at 322.571 kb on - strand at 322.571 kb on - strand at 322.571 kb on - strand at 322.598 kb on - strand at 322.613 kb on - strand at 322.613 kb on - strand at 322.622 kb on - strand at 322.629 kb on - strand at 322.633 kb on + strand at 322.633 kb on + strand at 322.633 kb on + strand at 322.641 kb on - strand at 322.642 kb on - strand at 322.652 kb on - strand at 322.659 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.660 kb on + strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.668 kb on - strand at 322.670 kb on + strand at 322.678 kb on - strand at 322.686 kb on - strand at 322.696 kb on + strand at 322.696 kb on + strand at 322.696 kb on + strand at 322.696 kb on + strand at 322.696 kb on + strand at 322.696 kb on + strand at 322.704 kb on - strand at 322.704 kb on - strand at 322.704 kb on - strand at 322.704 kb on - strand at 322.704 kb on - strand at 322.704 kb on - strand at 322.721 kb on + strand at 322.726 kb on + strand at 322.729 kb on + strand at 322.738 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.739 kb on + strand at 322.747 kb on + strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.747 kb on - strand at 322.749 kb on + strand at 322.757 kb on + strand at 322.758 kb on - strand at 322.760 kb on - strand at 322.764 kb on - strand at 322.765 kb on + strand at 322.765 kb on + strand at 322.765 kb on - strand at 322.765 kb on - strand at 322.765 kb on - strand at 322.770 kb on + strand at 322.770 kb on + strand at 322.773 kb on - strand at 322.773 kb on - strand at 322.790 kb on - strand at 322.791 kb on - strand at 322.792 kb on - strand at 322.792 kb on - strand at 322.792 kb on - strand at 322.811 kb on - strand at 322.855 kb on + strand at 322.855 kb on + strand at 322.858 kb on - strand at 322.863 kb on - strand at 322.863 kb on - strand at 322.863 kb on - strand at 322.976 kb on - strand at 323.065 kb on + strand at 323.108 kb on - strand at 323.131 kb on - strand at 323.151 kb on + strand at 323.152 kb on - strand at 323.215 kb on + strand at 323.234 kb on + strand at 323.234 kb on + strand at 323.234 kb on - strand at 323.250 kb on + strand at 323.250 kb on + strand at 323.250 kb on + strand at 323.257 kb on + strand at 323.267 kb on + strand at 323.267 kb on + strand at 323.271 kb on + strand at 323.275 kb on - strand at 323.275 kb on - strand at 323.275 kb on - strand at 323.275 kb on - strand at 323.275 kb on - strand at 323.275 kb on - strand at 323.275 kb on - strand at 323.293 kb on + strand at 323.317 kb on + strand at 323.325 kb on - strand at 323.330 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.332 kb on + strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.340 kb on - strand at 323.342 kb on - strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.344 kb on + strand at 323.349 kb on + strand at 323.349 kb on + strand at 323.349 kb on + strand at 323.349 kb on + strand at 323.349 kb on + strand at 323.349 kb on + strand at 323.350 kb on + strand at 323.350 kb on + strand at 323.350 kb on + strand at 323.350 kb on + strand at 323.350 kb on + strand at 323.352 kb on - strand at 323.352 kb on - strand at 323.352 kb on - strand at 323.352 kb on - strand at 323.352 kb on - strand at 323.356 kb on + strand at 323.357 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.358 kb on - strand at 323.388 kb on + strand at 323.388 kb on + strand at 323.416 kb on + strand, within SO0316 at 323.424 kb on + strand, within SO0316 at 323.431 kb on + strand, within SO0316 at 323.431 kb on + strand, within SO0316 at 323.431 kb on + strand, within SO0316 at 323.439 kb on - strand, within SO0316 at 323.439 kb on - strand, within SO0316 at 323.439 kb on - strand, within SO0316 at 323.477 kb on - strand, within SO0316 at 323.477 kb on - strand, within SO0316 at 323.477 kb on - strand, within SO0316 at 323.478 kb on - strand, within SO0316 at 323.485 kb on + strand, within SO0316 at 323.487 kb on - strand, within SO0316 at 323.492 kb on - strand, within SO0316 at 323.518 kb on + strand, within SO0316 at 323.524 kb on + strand, within SO0316 at 323.537 kb on - strand, within SO0316 at 323.538 kb on + strand, within SO0316 at 323.550 kb on + strand, within SO0316 at 323.621 kb on - strand, within SO0316 at 323.690 kb on + strand, within SO0316 at 323.717 kb on + strand, within SO0316 at 323.747 kb on + strand, within SO0316 at 323.756 kb on + strand, within SO0316 at 323.766 kb on + strand, within SO0316 at 323.790 kb on + strand at 323.791 kb on + strand at 323.791 kb on + strand at 323.799 kb on - strand at 323.799 kb on - strand at 323.801 kb on + strand at 323.801 kb on + strand at 323.801 kb on + strand at 323.809 kb on - strand at 323.818 kb on + strand at 323.826 kb on - strand at 323.853 kb on - strand at 323.933 kb on + strand, within SO0317 at 323.940 kb on + strand, within SO0317 at 323.978 kb on + strand, within SO0317 at 323.978 kb on + strand, within SO0317 at 324.072 kb on + strand, within SO0317 at 324.078 kb on + strand, within SO0317 at 324.128 kb on + strand, within SO0317 at 324.128 kb on + strand, within SO0317 at 324.128 kb on + strand, within SO0317 at 324.128 kb on + strand, within SO0317 at 324.128 kb on + strand, within SO0317 at 324.135 kb on - strand, within SO0317 at 324.136 kb on - strand, within SO0317 at 324.136 kb on - strand, within SO0317 at 324.157 kb on + strand, within SO0317 at 324.189 kb on + strand, within SO0317 at 324.198 kb on - strand, within SO0317 at 324.266 kb on - strand, within SO0317 at 324.286 kb on + strand, within SO0317 at 324.286 kb on + strand, within SO0317 at 324.391 kb on + strand, within SO0317 at 324.399 kb on - strand, within SO0317 at 324.403 kb on + strand, within SO0317 at 324.404 kb on - strand, within SO0317 at 324.430 kb on + strand, within SO0317 at 324.438 kb on - strand, within SO0317 at 324.438 kb on - strand, within SO0317 at 324.455 kb on + strand, within SO0317 at 324.469 kb on + strand, within SO0317 at 324.470 kb on - strand, within SO0317 at 324.476 kb on - strand, within SO0317 at 324.518 kb on + strand, within SO0317 at 324.518 kb on + strand, within SO0317 at 324.518 kb on + strand, within SO0317 at 324.526 kb on - strand, within SO0317 at 324.526 kb on - strand, within SO0317 at 324.526 kb on - strand, within SO0317 at 324.603 kb on - strand at 324.706 kb on + strand, within SO0318 at 324.773 kb on + strand, within SO0318 at 324.809 kb on - strand, within SO0318
Per-strain Table
Position Strand Gene LocusTag Fraction M1 center remove 322,373 + -0.5 322,381 - -0.8 322,415 + -0.9 322,415 + -1.2 322,423 - +0.7 322,423 - -1.6 322,425 + +1.4 322,428 - +0.1 322,428 - +0.5 322,432 + +1.2 322,432 + -0.1 322,432 + +0.7 322,432 + +0.1 322,433 - -1.0 322,433 - +1.1 322,440 - -2.6 322,440 - -0.9 322,440 - -0.5 322,440 - +0.4 322,440 - +0.1 322,440 - -0.2 322,475 + -0.9 322,475 + -1.4 322,483 - +1.0 322,492 + -0.4 322,492 + -1.1 322,492 + -0.1 322,492 + -0.2 322,492 + -0.9 322,492 + +0.1 322,492 + -1.3 322,492 + -1.2 322,498 - +0.8 322,500 - +0.3 322,500 - +1.4 322,500 - +1.0 322,500 - -0.6 322,500 - -0.5 322,503 + -1.6 322,511 - +0.2 322,533 + +1.8 322,533 + +0.1 322,545 + -2.2 322,561 + -2.0 322,563 + -0.2 322,563 + +1.0 322,571 - +1.5 322,571 - +0.4 322,571 - +0.1 322,571 - +0.2 322,571 - -0.6 322,598 - +1.2 322,613 - -0.2 322,613 - -1.2 322,622 - -0.2 322,629 - +0.3 322,633 + -2.0 322,633 + -0.4 322,633 + -0.4 322,641 - +0.6 322,642 - -0.0 322,652 - -0.1 322,659 + -0.7 322,660 + -0.7 322,660 + -1.1 322,660 + +0.9 322,660 + +1.3 322,660 + -0.9 322,660 + +0.7 322,660 + -1.1 322,660 + -0.0 322,660 + +0.7 322,660 + +0.0 322,668 - +1.1 322,668 - -1.5 322,668 - -1.4 322,668 - -2.3 322,668 - +2.1 322,668 - -0.7 322,668 - +0.1 322,668 - -0.7 322,670 + -0.4 322,678 - +0.3 322,686 - +0.4 322,696 + +0.2 322,696 + -0.2 322,696 + -0.9 322,696 + -2.0 322,696 + +1.0 322,696 + -1.2 322,704 - +0.4 322,704 - +0.2 322,704 - +0.3 322,704 - +1.8 322,704 - +2.8 322,704 - +1.3 322,721 + +0.3 322,726 + +0.3 322,729 + +0.0 322,738 + +0.6 322,739 + -0.4 322,739 + +0.3 322,739 + -0.0 322,739 + -0.6 322,739 + -0.2 322,739 + -0.4 322,739 + +1.6 322,739 + -2.1 322,739 + -1.2 322,739 + -0.0 322,739 + +0.4 322,739 + -1.0 322,739 + -0.4 322,747 + +1.6 322,747 - -0.2 322,747 - +0.8 322,747 - +0.9 322,747 - +0.4 322,747 - -0.9 322,747 - -0.9 322,747 - -0.0 322,747 - +0.3 322,747 - +0.5 322,747 - +0.5 322,747 - +0.0 322,747 - -1.1 322,747 - +0.7 322,747 - +1.8 322,747 - -1.1 322,747 - -1.1 322,749 + +0.7 322,757 + -0.3 322,758 - -0.9 322,760 - -0.4 322,764 - +0.8 322,765 + -1.4 322,765 + +0.5 322,765 - +1.2 322,765 - -1.3 322,765 - -0.2 322,770 + -0.1 322,770 + -0.3 322,773 - -0.5 322,773 - -1.0 322,790 - +1.3 322,791 - +0.3 322,792 - +0.1 322,792 - +0.5 322,792 - +0.0 322,811 - +0.9 322,855 + +1.6 322,855 + +1.0 322,858 - +1.3 322,863 - -0.7 322,863 - +0.8 322,863 - +1.3 322,976 - -0.7 323,065 + +1.1 323,108 - -0.6 323,131 - +1.2 323,151 + -0.5 323,152 - -1.4 323,215 + -0.8 323,234 + +0.8 323,234 + +0.9 323,234 - +0.8 323,250 + -0.1 323,250 + -0.6 323,250 + -0.0 323,257 + -1.0 323,267 + +0.3 323,267 + -1.3 323,271 + +1.7 323,275 - +1.1 323,275 - +1.4 323,275 - +0.3 323,275 - +0.2 323,275 - +1.8 323,275 - +0.9 323,275 - +0.4 323,293 + +2.0 323,317 + -1.0 323,325 - -2.1 323,330 + +1.1 323,332 + -1.9 323,332 + -0.5 323,332 + -0.8 323,332 + +1.6 323,332 + -0.9 323,332 + +2.4 323,332 + +0.6 323,332 + -0.4 323,332 + +0.5 323,340 - +1.7 323,340 - -1.1 323,340 - -0.4 323,340 - +1.4 323,340 - +0.1 323,340 - +3.2 323,340 - -1.2 323,340 - +0.2 323,340 - +1.8 323,342 - +0.3 323,344 + +0.1 323,344 + -0.2 323,344 + +0.9 323,344 + -1.2 323,344 + +1.2 323,344 + -1.5 323,344 + +1.0 323,344 + +0.3 323,344 + +2.0 323,344 + -0.7 323,349 + -1.3 323,349 + -1.7 323,349 + +0.8 323,349 + -1.4 323,349 + -0.9 323,349 + +0.5 323,350 + -0.0 323,350 + -0.4 323,350 + -0.9 323,350 + -0.7 323,350 + -1.2 323,352 - -0.0 323,352 - -0.1 323,352 - +1.2 323,352 - +0.0 323,352 - +0.7 323,356 + -0.4 323,357 - +0.3 323,358 - -0.8 323,358 - -1.0 323,358 - +0.9 323,358 - -0.5 323,358 - +0.1 323,358 - +0.6 323,358 - -2.1 323,358 - -1.6 323,358 - -1.3 323,358 - +1.1 323,358 - -0.7 323,358 - -0.2 323,388 + -1.1 323,388 + -0.3 323,416 + SO0316 0.13 -0.4 323,424 + SO0316 0.15 +0.5 323,431 + SO0316 0.16 -0.5 323,431 + SO0316 0.16 -0.9 323,431 + SO0316 0.16 -1.7 323,439 - SO0316 0.18 +0.8 323,439 - SO0316 0.18 -0.3 323,439 - SO0316 0.18 -0.8 323,477 - SO0316 0.26 +0.6 323,477 - SO0316 0.26 +0.3 323,477 - SO0316 0.26 -0.9 323,478 - SO0316 0.26 +1.6 323,485 + SO0316 0.28 -0.1 323,487 - SO0316 0.28 +0.5 323,492 - SO0316 0.29 -0.5 323,518 + SO0316 0.34 +1.6 323,524 + SO0316 0.36 -0.2 323,537 - SO0316 0.38 +0.6 323,538 + SO0316 0.39 +0.3 323,550 + SO0316 0.41 +1.3 323,621 - SO0316 0.56 +0.5 323,690 + SO0316 0.70 -1.2 323,717 + SO0316 0.76 -1.2 323,747 + SO0316 0.82 -0.0 323,756 + SO0316 0.84 +0.5 323,766 + SO0316 0.86 -0.0 323,790 + +2.3 323,791 + -0.8 323,791 + -0.4 323,799 - +1.2 323,799 - -1.8 323,801 + -2.3 323,801 + +1.6 323,801 + -0.9 323,809 - -0.0 323,818 + -1.2 323,826 - -2.0 323,853 - -1.0 323,933 + SO0317 0.11 +1.0 323,940 + SO0317 0.12 +2.4 323,978 + SO0317 0.17 -0.1 323,978 + SO0317 0.17 +1.7 324,072 + SO0317 0.29 +0.2 324,078 + SO0317 0.30 -0.2 324,128 + SO0317 0.37 +1.3 324,128 + SO0317 0.37 +0.9 324,128 + SO0317 0.37 +0.2 324,128 + SO0317 0.37 -0.1 324,128 + SO0317 0.37 -1.7 324,135 - SO0317 0.38 +0.3 324,136 - SO0317 0.38 -0.4 324,136 - SO0317 0.38 +1.6 324,157 + SO0317 0.40 +1.2 324,189 + SO0317 0.45 -1.5 324,198 - SO0317 0.46 +0.2 324,266 - SO0317 0.55 -1.0 324,286 + SO0317 0.57 -2.3 324,286 + SO0317 0.57 +0.4 324,391 + SO0317 0.71 -3.0 324,399 - SO0317 0.72 -0.7 324,403 + SO0317 0.73 -0.1 324,404 - SO0317 0.73 -2.5 324,430 + SO0317 0.76 +0.7 324,438 - SO0317 0.77 -0.3 324,438 - SO0317 0.77 -0.6 324,455 + SO0317 0.80 +1.1 324,469 + SO0317 0.82 -0.1 324,470 - SO0317 0.82 -0.2 324,476 - SO0317 0.82 -0.5 324,518 + SO0317 0.88 -0.2 324,518 + SO0317 0.88 -0.6 324,518 + SO0317 0.88 -1.5 324,526 - SO0317 0.89 -1.1 324,526 - SO0317 0.89 -1.8 324,526 - SO0317 0.89 -0.4 324,603 - +2.1 324,706 + SO0318 0.19 -0.4 324,773 + SO0318 0.38 +0.6 324,809 - SO0318 0.48 +0.4
Or see this region's nucleotide sequence