Strain Fitness in Shewanella oneidensis MR-1 around SO_2140

Experiment: M1 center

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M1 center
2,245,870	+				-0.4
2,245,901	+				+0.7
2,245,909	-				-0.4
2,245,909	-				+0.4
2,245,909	-				-1.1
2,245,909	-				+1.1
2,245,909	-				-0.7
2,245,909	-				+0.7
2,245,924	+				+0.4
2,245,932	-				-2.5
2,245,932	-				-2.0
2,246,003	-				+1.2
2,246,015	-				+2.7
2,246,015	-				-1.4
2,246,015	-				-0.0
2,246,018	+				-2.3
2,246,026	-				-0.3
2,246,029	+				+0.1
2,246,037	+				-1.2
2,246,037	+				+1.7
2,246,037	+				-2.1
2,246,037	+				+0.2
2,246,037	+				-2.3
2,246,037	+				-0.2
2,246,037	+				-1.4
2,246,037	-				-0.6
2,246,037	-				-0.6
2,246,045	-				+1.7
2,246,045	-				-0.4
2,246,045	-				+0.5
2,246,045	-				-2.4
2,246,045	-				-0.7
2,246,045	-				-0.3
2,246,045	-				-0.4
2,246,045	-				-0.3
2,246,046	-				+0.2
2,246,048	+				-0.7
2,246,052	+				+2.5
2,246,055	-				-2.0
2,246,055	-				+0.6
2,246,060	-				+0.2
2,246,060	-				+0.1
2,246,071	-				+0.4
2,246,071	-				-1.5
2,246,084	-				+0.6
2,246,093	+				+2.0
2,246,093	+				-0.8
2,246,101	-				+0.7
2,246,101	-				+0.6
2,246,110	+				-2.1
2,246,110	+				-1.3
2,246,120	+				-2.4
2,246,120	+				+1.3
2,246,120	+				-0.1
2,246,128	-				-2.3
2,246,128	-				-1.2
2,246,128	-				-0.3
2,246,128	-				+1.7
2,246,128	-				-0.6
2,246,128	-				+0.6
2,246,128	-				+1.5
2,246,128	-				-1.2
2,246,128	-				+0.2
2,246,132	+				-1.0
2,246,138	-				+0.1
2,246,138	-				+1.7
2,246,138	-				+1.6
2,246,140	+				-0.1
2,246,141	-				-0.6
2,246,141	-				+0.1
2,246,141	-				+1.6
2,246,148	-				-0.5
2,246,148	-				-1.0
2,246,148	-				+2.7
2,246,148	-				-1.7
2,246,148	-				-0.4
2,246,148	-				+0.8
2,246,232	-				-0.4
2,246,262	+				-0.7
2,246,270	-				+1.3
2,246,289	-				-1.4
2,246,325	-				+0.1
2,246,356	+				-1.4
2,246,438	+				-1.2
2,246,446	-				+0.6
2,246,446	-				-0.6
2,246,456	-				+0.6
2,246,456	-				-0.3
2,246,470	+				-1.4
2,246,490	+				-1.1
2,246,495	+				+0.8
2,246,496	-				-0.9
2,246,512	+				+1.1
2,246,512	+				-0.2
2,246,512	+				-0.3
2,246,512	+				+0.5
2,246,512	+				-0.7
2,246,512	+				+0.4
2,246,512	+				+3.3
2,246,512	+				+1.9
2,246,512	+				-1.2
2,246,512	+				-0.3
2,246,512	+				-2.8
2,246,512	+				+0.3
2,246,512	+				+0.6
2,246,520	-				-1.7
2,246,520	-				-0.3
2,246,520	-				-0.9
2,246,520	-				+0.7
2,246,520	-				-0.6
2,246,520	-				-1.1
2,246,528	+				-2.7
2,246,528	+				-0.2
2,246,528	+				+0.6
2,246,528	+				-1.1
2,246,528	+				+0.8
2,246,528	+				+0.1
2,246,528	+				+0.0
2,246,528	+				-0.8
2,246,528	+				-2.3
2,246,528	+				+1.7
2,246,528	+				+1.7
2,246,528	+				+0.7
2,246,528	+				-0.7
2,246,528	+				-2.0
2,246,528	+				-0.3
2,246,528	+				-3.0
2,246,528	+				-0.1
2,246,534	+				-0.0
2,246,534	+				+0.9
2,246,534	+				-0.7
2,246,534	+				+0.4
2,246,534	+				+2.0
2,246,536	-				+0.6
2,246,536	-				+0.4
2,246,536	-				-1.4
2,246,536	-				-1.0
2,246,536	-				-1.2
2,246,536	-				+0.8
2,246,536	-				+0.4
2,246,536	-				-1.2
2,246,536	-				-0.3
2,246,536	-				+0.8
2,246,536	-				+1.8
2,246,536	-				-1.5
2,246,536	-				+0.4
2,246,542	-				-1.1
2,246,542	-				+0.9
2,246,542	-				-0.9
2,246,542	-				-0.7
2,246,542	-				+0.0
2,246,542	-				+0.9
2,246,542	-				+1.3
2,246,542	-				+0.2
2,246,558	+				+0.8
2,246,558	+				-1.2
2,246,558	+				-0.7
2,246,558	+				+0.3
2,246,558	+				+0.7
2,246,563	+				-1.8
2,246,571	-				-1.6
2,246,582	+				-0.1
2,246,582	+				+0.1
2,246,582	+				+0.4
2,246,582	+				-0.9
2,246,582	+				+0.3
2,246,582	+				-0.8
2,246,590	-				-0.3
2,246,590	-				+0.8
2,246,590	-				-0.9
2,246,590	-				-1.4
2,246,590	-				+0.6
2,246,590	-				+0.5
2,246,590	-				+0.1
2,246,590	-				-1.4
2,246,592	+				+1.8
2,246,592	+				+2.0
2,246,592	+				+0.1
2,246,592	+				+1.6
2,246,592	+				+1.4
2,246,592	+				+1.0
2,246,592	+				+1.5
2,246,592	+				-1.6
2,246,592	+				-2.1
2,246,592	+				-0.9
2,246,592	+				+2.3
2,246,592	+				+1.3
2,246,592	+				+0.9
2,246,592	+				-0.5
2,246,592	+				+0.1
2,246,592	+				-1.1
2,246,600	-				+2.1
2,246,600	-				+1.0
2,246,600	-				+0.7
2,246,600	-				-0.3
2,246,600	-				+0.7
2,246,600	-				+0.3
2,246,600	-				-1.3
2,246,636	+				+0.5
2,246,638	-				+0.7
2,246,638	-				+0.6
2,246,639	+				-0.1
2,246,644	+				-1.9
2,246,660	+				-0.6
2,246,663	+				-0.7
2,246,663	+				-2.2
2,246,664	+				-0.7
2,246,668	-				-0.9
2,246,668	-				-1.7
2,246,673	+				+0.4
2,246,673	+				-1.7
2,246,673	+				-2.7
2,246,681	-				+0.9
2,246,681	-				-1.3
2,246,681	-				+0.5
2,246,681	-				+0.0
2,246,686	-				-1.3
2,246,689	-				+0.9
2,246,689	-				+1.3
2,246,696	+				-0.5
2,246,696	+				+0.3
2,246,696	+				+0.8
2,246,696	+				+2.3
2,246,702	-				+0.6
2,246,704	-				-1.3
2,246,704	-				+0.5
2,246,711	-				-0.1
2,246,719	+				-2.1
2,246,719	+				+0.3
2,246,719	+				-0.4
2,246,720	-				+0.7
2,246,721	-				-1.1
2,246,727	+				+0.7
2,246,727	+				+0.1
2,246,727	-				-2.3
2,246,727	-				-0.7
2,246,729	+				-0.7
2,246,735	+				+0.1
2,246,737	-				+0.3
2,246,768	+				+0.2
2,246,803	+				-1.7
2,246,808	+				-0.3
2,246,808	+				+0.4
2,246,811	-				-1.4
2,246,815	+				-1.4
2,246,816	-				-0.2
2,246,823	-				-1.2
2,246,839	+				-1.2
2,246,845	-				+0.4
2,246,865	+		SO_2140	0.12	-1.3
2,246,865	+		SO_2140	0.12	-0.1
2,246,865	+		SO_2140	0.12	+0.7
2,246,865	+		SO_2140	0.12	-1.3
2,246,865	+		SO_2140	0.12	-0.2
2,246,865	+		SO_2140	0.12	+1.7
2,246,865	+		SO_2140	0.12	-0.9
2,246,873	-		SO_2140	0.17	-0.6
2,246,873	-		SO_2140	0.17	+0.3
2,246,873	-		SO_2140	0.17	+0.8
2,246,873	-		SO_2140	0.17	-2.0
2,246,873	-		SO_2140	0.17	-0.4
2,246,873	-		SO_2140	0.17	-0.1
2,246,873	-		SO_2140	0.17	-1.5
2,246,873	-		SO_2140	0.17	-2.2
2,246,873	-		SO_2140	0.17	+1.2
2,246,873	-		SO_2140	0.17	-0.8
2,246,873	-		SO_2140	0.17	-0.8
2,246,888	+		SO_2140	0.26	-0.5
2,246,927	-		SO_2140	0.50	+1.1
2,246,953	-		SO_2140	0.66	+1.6
2,246,979	+		SO_2140	0.82	+1.0
2,246,987	-		SO_2140	0.87	+1.3
2,247,018	-				+0.1
2,247,026	-				+0.6