Strain Fitness in Shewanella oneidensis MR-1 around SO4262

Experiment: LB 20C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 20C
4,437,426	-				+0.1
4,437,430	+				-1.2
4,437,444	+				+0.6
4,437,499	+		SO4261	0.17	+0.3
4,437,502	+		SO4261	0.18	-0.1
4,437,502	+		SO4261	0.18	+0.2
4,437,507	-		SO4261	0.19	-0.3
4,437,510	-		SO4261	0.19	+0.4
4,437,510	-		SO4261	0.19	+0.1
4,437,510	-		SO4261	0.19	+0.4
4,437,540	-		SO4261	0.24	+0.5
4,437,544	+		SO4261	0.24	-0.8
4,437,564	-		SO4261	0.27	+0.2
4,437,633	+		SO4261	0.38	-0.3
4,437,633	-		SO4261	0.38	-0.3
4,437,665	+		SO4261	0.43	-0.4
4,437,678	+		SO4261	0.45	-0.1
4,437,686	-		SO4261	0.46	+0.5
4,437,686	-		SO4261	0.46	+0.0
4,437,690	+		SO4261	0.47	+0.2
4,437,697	+		SO4261	0.48	-0.0
4,437,714	+		SO4261	0.50	+0.5
4,437,736	+		SO4261	0.54	+0.2
4,437,759	+		SO4261	0.57	+0.1
4,437,759	+		SO4261	0.57	-0.1
4,437,767	-		SO4261	0.59	+0.7
4,437,849	-		SO4261	0.71	-0.3
4,437,849	-		SO4261	0.71	-0.3
4,437,853	+		SO4261	0.72	+0.6
4,437,861	-		SO4261	0.73	-0.3
4,437,885	+		SO4261	0.77	+0.4
4,437,917	-		SO4261	0.82	-0.4
4,437,930	-		SO4261	0.84	-0.2
4,438,011	-				-0.1
4,438,049	+				+0.5
4,438,089	-				+0.7
4,438,089	-				+0.0
4,438,091	+				+0.4
4,438,110	+				+0.9
4,438,110	+				-0.5
4,438,110	+				-0.8
4,438,175	+				+0.3
4,438,175	+				-1.0
4,438,204	+				+0.0
4,438,213	+				+0.2
4,438,213	+				+0.0
4,438,227	-				+0.7
4,438,237	-				-0.6
4,438,244	-				+0.2
4,438,257	-				-0.2
4,438,257	-				-0.3
4,438,315	+				+0.5
4,438,315	+				+1.0
4,438,325	+				+0.1
4,438,325	+				+0.2
4,438,333	-				-0.2
4,438,341	+				-1.2
4,438,349	-				-0.5
4,438,362	-				-0.1
4,438,362	-				+1.2
4,438,401	+				+0.4
4,438,405	+				-1.2
4,438,409	-				+0.4
4,438,485	+		SO4262	0.14	+0.1
4,438,496	+		SO4262	0.16	+0.9
4,438,496	+		SO4262	0.16	+0.6
4,438,504	-		SO4262	0.17	+0.5
4,438,543	-		SO4262	0.25	+1.7
4,438,575	+		SO4262	0.32	+1.0
4,438,579	-		SO4262	0.33	-0.7
4,438,603	-		SO4262	0.37	+0.1
4,438,618	-		SO4262	0.40	+0.2
4,438,664	-		SO4262	0.50	+0.3
4,438,666	+		SO4262	0.50	-0.5
4,438,674	-		SO4262	0.52	-0.1
4,438,690	-		SO4262	0.55	+0.6
4,438,699	+		SO4262	0.57	+0.5
4,438,704	+		SO4262	0.58	-0.2
4,438,707	-		SO4262	0.58	+0.7
4,438,707	-		SO4262	0.58	+0.3
4,438,744	-		SO4262	0.66	-0.1
4,438,771	-		SO4262	0.71	+0.4
4,438,855	+		SO4262	0.88	+0.9
4,438,873	+				-0.8
4,438,881	-				+0.1
4,438,895	+				+0.3
4,438,907	-				-0.0
4,438,907	-				-0.8
4,438,916	+				-0.3
4,438,918	-				-1.8
4,438,918	-				+0.5
4,438,967	-				-0.2
4,438,990	-		SO4263	0.11	-0.5
4,438,997	+		SO4263	0.12	-0.8
4,439,039	+		SO4263	0.18	-0.1
4,439,053	+		SO4263	0.20	-0.6
4,439,053	+		SO4263	0.20	-0.0
4,439,061	-		SO4263	0.21	+0.6
4,439,062	-		SO4263	0.21	+0.6
4,439,068	-		SO4263	0.22	-0.4
4,439,096	+		SO4263	0.26	+0.3
4,439,096	+		SO4263	0.26	+0.3
4,439,096	+		SO4263	0.26	-0.6
4,439,096	+		SO4263	0.26	-0.1
4,439,096	+		SO4263	0.26	-0.2
4,439,096	+		SO4263	0.26	-0.8
4,439,096	+		SO4263	0.26	-0.2
4,439,096	+		SO4263	0.26	-0.1
4,439,101	+		SO4263	0.27	-0.3
4,439,104	-		SO4263	0.27	-1.2
4,439,104	-				-0.3
4,439,104	-		SO4263	0.27	+1.0
4,439,104	-		SO4263	0.27	+1.4
4,439,104	-		SO4263	0.27	-0.4
4,439,104	-		SO4263	0.27	+0.4
4,439,104	-		SO4263	0.27	+0.4
4,439,104	-		SO4263	0.27	-0.1
4,439,104	-		SO4263	0.27	-0.1
4,439,109	-		SO4263	0.28	-1.8
4,439,121	-		SO4263	0.30	-0.1
4,439,141	+		SO4263	0.33	+0.1
4,439,141	+		SO4263	0.33	+0.2
4,439,149	-		SO4263	0.34	+0.6
4,439,149	-		SO4263	0.34	+0.2
4,439,249	+		SO4263	0.48	-0.7
4,439,292	-		SO4263	0.54	-0.7
4,439,364	-		SO4263	0.64	-1.6
4,439,425	-		SO4263	0.73	+1.0
4,439,425	-		SO4263	0.73	-0.0
4,439,433	-		SO4263	0.74	+0.1
4,439,454	+		SO4263	0.77	-0.3
4,439,454	+		SO4263	0.77	+1.1
4,439,462	-		SO4263	0.78	+0.0
4,439,467	-		SO4263	0.79	+0.1
4,439,470	+		SO4263	0.79	+0.7
4,439,478	-		SO4263	0.80	+0.1
4,439,484	-		SO4263	0.81	-0.2
4,439,484	-		SO4263	0.81	-1.5
4,439,484	-		SO4263	0.81	-0.1
4,439,538	+		SO4263	0.89	-1.6
4,439,546	-				-0.1
4,439,547	+				-0.6
4,439,547	-				-0.2
4,439,604	+				+0.2
4,439,617	+				-0.6
4,439,618	+				+0.2
4,439,618	+				+0.3
4,439,618	+				-2.2
4,439,623	+				+0.2
4,439,624	+				-0.8
4,439,658	-				-0.3
4,439,732	-				+1.6
4,439,732	-				-1.0
4,439,732	-				-0.1
4,439,744	+				+1.7
4,439,751	+				-0.4
4,439,752	-				-0.8
4,439,765	+				-0.1
4,439,782	-	hsdS-2	SO4264	0.10	-0.1
4,439,813	+	hsdS-2	SO4264	0.13	-0.4
4,439,813	+	hsdS-2	SO4264	0.13	+0.2
4,439,813	+	hsdS-2	SO4264	0.13	-0.0
4,439,813	+	hsdS-2	SO4264	0.13	+0.1
4,439,818	+	hsdS-2	SO4264	0.13	+0.3
4,439,821	-	hsdS-2	SO4264	0.13	-0.1
4,439,821	-	hsdS-2	SO4264	0.13	-0.9
4,439,821	-	hsdS-2	SO4264	0.13	-0.5
4,439,821	-	hsdS-2	SO4264	0.13	-0.3
4,439,821	-	hsdS-2	SO4264	0.13	+1.1
4,439,821	-	hsdS-2	SO4264	0.13	+0.7
4,439,821	-	hsdS-2	SO4264	0.13	-0.3
4,439,826	-	hsdS-2	SO4264	0.13	+0.6
4,439,832	-	hsdS-2	SO4264	0.14	-0.4
4,439,846	+	hsdS-2	SO4264	0.15	-0.8
4,439,854	+	hsdS-2	SO4264	0.15	-0.1
4,439,856	-	hsdS-2	SO4264	0.15	-0.3
4,439,911	-	hsdS-2	SO4264	0.19	+0.4