Strain Fitness in Shewanella oneidensis MR-1 around SO2547

Experiment: LB 20C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 20C
2,679,944	-		SO2545	0.68	+0.6
2,679,975	+		SO2545	0.70	-2.5
2,679,978	+		SO2545	0.70	+0.4
2,679,984	-		SO2545	0.71	-0.1
2,679,986	-		SO2545	0.71	-1.0
2,680,001	-		SO2545	0.72	+0.2
2,680,007	+		SO2545	0.72	-0.6
2,680,007	+		SO2545	0.72	+0.1
2,680,023	+		SO2545	0.74	-0.2
2,680,025	+		SO2545	0.74	+0.6
2,680,025	+		SO2545	0.74	-1.6
2,680,033	-		SO2545	0.74	-0.6
2,680,069	+		SO2545	0.77	-0.1
2,680,080	+		SO2545	0.78	+0.1
2,680,085	+		SO2545	0.78	-0.1
2,680,088	-		SO2545	0.79	+0.5
2,680,110	+		SO2545	0.80	+0.3
2,680,118	-		SO2545	0.81	+0.1
2,680,118	-		SO2545	0.81	+0.2
2,680,122	-		SO2545	0.81	+0.4
2,680,127	-		SO2545	0.82	-0.6
2,680,155	+		SO2545	0.84	+0.2
2,680,177	-		SO2545	0.86	+0.3
2,680,229	+		SO2545	0.90	+0.1
2,680,229	+		SO2545	0.90	-0.3
2,680,229	+		SO2545	0.90	+0.9
2,680,235	+				+0.5
2,680,242	-				+0.0
2,680,252	-				-0.1
2,680,267	-				+0.3
2,680,277	-				+0.6
2,680,309	+				-0.1
2,680,313	-				-0.0
2,680,317	-				-0.2
2,680,317	-				+1.0
2,680,326	-				-0.9
2,680,347	+				+0.7
2,680,347	+				+0.2
2,680,354	-				+0.5
2,680,355	-				+0.1
2,680,389	+				+1.1
2,680,397	+				+0.2
2,680,397	-				+0.4
2,680,404	+				-0.7
2,680,404	+				-0.6
2,680,406	-				+0.4
2,680,406	-				+0.2
2,680,452	-		SO2546	0.15	-0.7
2,680,460	+		SO2546	0.17	+0.3
2,680,479	+		SO2546	0.20	+0.3
2,680,486	+		SO2546	0.21	+0.3
2,680,486	-		SO2546	0.21	+0.6
2,680,487	-		SO2546	0.21	+0.4
2,680,487	-		SO2546	0.21	+0.1
2,680,511	+		SO2546	0.25	+0.5
2,680,517	+		SO2546	0.27	+0.0
2,680,522	+		SO2546	0.27	-0.1
2,680,527	+		SO2546	0.28	+0.2
2,680,527	+		SO2546	0.28	+0.6
2,680,527	+		SO2546	0.28	+0.1
2,680,527	+		SO2546	0.28	-0.2
2,680,527	+		SO2546	0.28	+0.5
2,680,527	+		SO2546	0.28	+0.1
2,680,527	+		SO2546	0.28	-0.4
2,680,527	+		SO2546	0.28	-0.1
2,680,527	+		SO2546	0.28	+0.5
2,680,527	+		SO2546	0.28	-0.9
2,680,527	+		SO2546	0.28	-0.2
2,680,527	+		SO2546	0.28	-0.8
2,680,530	-		SO2546	0.29	-0.6
2,680,530	-		SO2546	0.29	-0.9
2,680,530	-		SO2546	0.29	+0.7
2,680,530	-		SO2546	0.29	+2.3
2,680,530	-		SO2546	0.29	-0.7
2,680,533	-		SO2546	0.29	+0.1
2,680,535	-		SO2546	0.30	+0.0
2,680,535	-		SO2546	0.30	+0.9
2,680,535	-		SO2546	0.30	+0.6
2,680,535	-		SO2546	0.30	+0.4
2,680,535	-		SO2546	0.30	+0.2
2,680,535	-		SO2546	0.30	+0.1
2,680,535	-		SO2546	0.30	+0.1
2,680,535	-		SO2546	0.30	-0.0
2,680,535	-		SO2546	0.30	-0.0
2,680,535	-		SO2546	0.30	+0.0
2,680,535	-		SO2546	0.30	+0.1
2,680,541	-		SO2546	0.31	+0.1
2,680,646	-		SO2546	0.49	+2.1
2,680,652	-		SO2546	0.50	+0.0
2,680,652	-		SO2546	0.50	-1.1
2,680,682	+		SO2546	0.55	+0.2
2,680,682	+		SO2546	0.55	-0.0
2,680,684	+		SO2546	0.56	+0.7
2,680,692	-		SO2546	0.57	-0.1
2,680,697	-		SO2546	0.58	-0.7
2,680,702	-		SO2546	0.59	+0.7
2,680,711	-		SO2546	0.60	+0.9
2,680,712	-				+0.7
2,680,712	-		SO2546	0.61	-0.2
2,680,728	-		SO2546	0.63	+1.3
2,680,729	-		SO2546	0.64	-1.6
2,680,739	-		SO2546	0.65	-0.0
2,680,739	-		SO2546	0.65	+1.1
2,680,739	-		SO2546	0.65	-0.7
2,680,740	+		SO2546	0.65	+0.8
2,680,769	-		SO2546	0.71	-0.5
2,680,795	+		SO2546	0.75	-0.1
2,680,795	+		SO2546	0.75	+0.4
2,680,795	+		SO2546	0.75	-0.2
2,680,798	-		SO2546	0.76	-0.2
2,680,798	-		SO2546	0.76	-0.4
2,680,803	-		SO2546	0.76	+0.5
2,680,803	-		SO2546	0.76	-0.2
2,680,808	-		SO2546	0.77	+0.3
2,680,809	+		SO2546	0.77	-0.1
2,680,818	+		SO2546	0.79	-0.5
2,680,826	+		SO2546	0.80	-0.5
2,680,896	+				-0.9
2,680,899	-				+0.3
2,680,908	+				+0.0
2,680,909	-				+0.5
2,680,913	+				+0.8
2,680,913	+				-0.3
2,680,913	+				+0.2
2,680,913	+				-0.0
2,680,913	+				+0.1
2,680,913	+				+0.0
2,680,913	+				+0.7
2,680,913	+				+0.5
2,680,913	+				+0.3
2,680,913	+				+0.9
2,680,913	+				-0.0
2,680,913	+				-0.7
2,680,921	-				-0.2
2,680,921	-				-0.2
2,680,942	+				+0.1
2,680,945	-				+0.9
2,680,962	+				+0.1
2,680,962	+				-0.1
2,680,962	+				+0.2
2,680,964	+				+0.2
2,680,970	-				-0.3
2,680,970	-				-0.7
2,680,970	-				-0.2
2,680,972	-		SO2547	0.10	+0.6
2,680,979	+		SO2547	0.12	+0.8
2,681,008	+		SO2547	0.20	+0.4
2,681,047	+		SO2547	0.31	+0.3
2,681,065	-		SO2547	0.36	+0.5
2,681,105	-		SO2547	0.47	-0.1
2,681,107	+		SO2547	0.47	-0.5
2,681,107	+		SO2547	0.47	-0.3
2,681,107	+		SO2547	0.47	+0.9
2,681,107	+		SO2547	0.47	+1.3
2,681,107	+		SO2547	0.47	+0.2
2,681,107	+		SO2547	0.47	-0.1
2,681,107	+		SO2547	0.47	+0.3
2,681,115	-		SO2547	0.49	+1.1
2,681,115	-		SO2547	0.49	-0.0
2,681,115	-		SO2547	0.49	-0.1
2,681,115	-		SO2547	0.49	+0.7
2,681,115	-		SO2547	0.49	-0.4
2,681,115	-		SO2547	0.49	+0.6
2,681,115	-		SO2547	0.49	+0.1
2,681,115	-		SO2547	0.49	+0.2
2,681,115	-		SO2547	0.49	+0.1
2,681,115	-		SO2547	0.49	+0.1
2,681,115	-		SO2547	0.49	+0.1
2,681,115	-		SO2547	0.49	+0.4
2,681,122	-		SO2547	0.51	-0.2
2,681,139	-		SO2547	0.56	+1.3
2,681,213	-		SO2547	0.76	+0.5
2,681,218	-		SO2547	0.78	+1.3
2,681,228	-		SO2547	0.80	-0.9
2,681,251	-		SO2547	0.87	-0.6
2,681,433	+				+0.0
2,681,552	+				+0.9
2,681,633	+				+0.3
2,681,704	+				+0.8
2,681,704	+				-1.1
2,681,704	+				-0.3
2,681,712	-				+0.7
2,681,764	+				-0.3
2,681,814	-				+0.3
2,681,861	+				+0.4
2,681,861	+				-0.3
2,681,869	-				+0.1
2,682,031	+				+0.6
2,682,036	+				-0.1
2,682,036	+				+1.1
2,682,039	-				-0.2
2,682,039	-				-0.6
2,682,049	-				-0.4
2,682,157	-				+0.3
2,682,161	+		SO2549	0.11	-0.9
2,682,169	-		SO2549	0.13	+0.2
2,682,169	-		SO2549	0.13	+1.3
2,682,175	+		SO2549	0.15	+0.4
2,682,183	-		SO2549	0.17	-1.7
2,682,185	+		SO2549	0.18	-1.2
2,682,185	+		SO2549	0.18	+0.4
2,682,185	+		SO2549	0.18	-0.7
2,682,193	-		SO2549	0.20	-0.1
2,682,193	-		SO2549	0.20	-0.1
2,682,225	-		SO2549	0.30	+0.0
2,682,236	+		SO2549	0.33	+0.3
2,682,247	-		SO2549	0.36	+1.0
2,682,252	+		SO2549	0.37	-1.3
2,682,260	-		SO2549	0.40	+0.3
2,682,260	-		SO2549	0.40	+0.5
2,682,281	+		SO2549	0.46	+1.1
2,682,289	-		SO2549	0.48	-0.0
2,682,297	+		SO2549	0.51	-0.1
2,682,297	+		SO2549	0.51	+0.2