Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0559 and fhs are separated by 435 nucleotides fhs and SO_0561 are separated by 72 nucleotides SO_0561 and SO0560.2 are separated by 75 nucleotides
SO0559: SO0559 - MaoC domain protein (NCBI ptt file), at 579,229 to 580,059
SO0559
SO0560: fhs - formate--tetrahydrofolate ligase (NCBI ptt file), at 580,495 to 582,207
fhs
SO_0561: SO_0561 - no description, at 582,280 to 582,567
_0561
SO0560.2: SO0560.2 - hypothetical small-conductance mechanosensitive channel (NCBI ptt file), at 582,643 to 583,932
SO0560.2
Position (kb) 580
581
582
583 Strain fitness (log2 ratio) -2
-1
0
1 at 579.554 kb on - strand, within SO0559 at 579.594 kb on - strand, within SO0559 at 579.594 kb on - strand, within SO0559 at 579.636 kb on - strand, within SO0559 at 579.645 kb on + strand, within SO0559 at 579.695 kb on + strand, within SO0559 at 579.703 kb on - strand, within SO0559 at 579.703 kb on - strand, within SO0559 at 579.759 kb on - strand, within SO0559 at 579.829 kb on + strand, within SO0559 at 579.837 kb on - strand, within SO0559 at 579.841 kb on + strand, within SO0559 at 579.908 kb on + strand, within SO0559 at 579.936 kb on - strand, within SO0559 at 579.936 kb on - strand, within SO0559 at 579.936 kb on - strand, within SO0559 at 580.053 kb on + strand at 580.061 kb on - strand at 580.061 kb on - strand at 580.281 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.305 kb on + strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.313 kb on - strand at 580.320 kb on + strand at 580.340 kb on + strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.346 kb on - strand at 580.622 kb on + strand at 580.624 kb on + strand at 580.632 kb on + strand at 580.632 kb on + strand at 580.640 kb on - strand at 580.697 kb on - strand, within fhs at 580.709 kb on - strand, within fhs at 580.731 kb on - strand, within fhs at 580.744 kb on - strand, within fhs at 580.749 kb on + strand, within fhs at 580.774 kb on + strand, within fhs at 580.893 kb on + strand, within fhs at 580.928 kb on + strand, within fhs at 580.962 kb on + strand, within fhs at 580.962 kb on + strand, within fhs at 580.984 kb on + strand, within fhs at 580.992 kb on - strand, within fhs at 581.007 kb on + strand, within fhs at 581.098 kb on + strand, within fhs at 581.098 kb on + strand, within fhs at 581.106 kb on - strand, within fhs at 581.106 kb on - strand, within fhs at 581.106 kb on - strand, within fhs at 581.220 kb on + strand, within fhs at 581.228 kb on - strand, within fhs at 581.327 kb on + strand, within fhs at 581.338 kb on + strand, within fhs at 581.396 kb on + strand, within fhs at 581.404 kb on - strand, within fhs at 581.419 kb on - strand, within fhs at 581.497 kb on - strand, within fhs at 581.517 kb on - strand, within fhs at 581.522 kb on + strand, within fhs at 581.522 kb on + strand, within fhs at 581.522 kb on + strand, within fhs at 581.522 kb on + strand, within fhs at 581.522 kb on + strand, within fhs at 581.522 kb on + strand, within fhs at 581.530 kb on - strand, within fhs at 581.530 kb on - strand, within fhs at 581.530 kb on - strand, within fhs at 581.530 kb on - strand, within fhs at 581.530 kb on - strand, within fhs at 581.530 kb on - strand, within fhs at 581.530 kb on - strand, within fhs at 581.540 kb on - strand, within fhs at 581.761 kb on + strand, within fhs at 581.773 kb on + strand, within fhs at 581.779 kb on + strand, within fhs at 581.780 kb on - strand, within fhs at 581.781 kb on - strand, within fhs at 581.893 kb on + strand, within fhs at 581.893 kb on + strand, within fhs at 581.899 kb on + strand, within fhs at 582.023 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.030 kb on + strand, within fhs at 582.038 kb on - strand at 582.038 kb on - strand at 582.038 kb on - strand at 582.038 kb on - strand at 582.038 kb on - strand at 582.043 kb on + strand at 582.145 kb on - strand at 582.148 kb on + strand at 582.148 kb on + strand at 582.148 kb on + strand at 582.156 kb on - strand at 582.208 kb on + strand at 582.272 kb on + strand at 582.306 kb on - strand at 582.323 kb on + strand, within SO_0561 at 582.392 kb on - strand, within SO_0561 at 582.420 kb on + strand, within SO_0561 at 582.443 kb on + strand, within SO_0561 at 582.455 kb on + strand, within SO_0561 at 582.458 kb on - strand, within SO_0561 at 582.463 kb on + strand, within SO_0561 at 582.486 kb on + strand, within SO_0561 at 582.486 kb on - strand, within SO_0561 at 582.521 kb on + strand, within SO_0561 at 582.521 kb on + strand, within SO_0561 at 582.521 kb on + strand, within SO_0561 at 582.521 kb on + strand, within SO_0561 at 582.529 kb on - strand, within SO_0561 at 582.529 kb on - strand, within SO_0561 at 582.529 kb on - strand, within SO_0561 at 582.529 kb on - strand, within SO_0561 at 582.529 kb on - strand, within SO_0561 at 582.539 kb on - strand at 582.608 kb on - strand at 582.724 kb on - strand at 582.806 kb on - strand, within SO0560.2 at 582.848 kb on - strand, within SO0560.2 at 582.985 kb on + strand, within SO0560.2 at 583.056 kb on + strand, within SO0560.2 at 583.099 kb on - strand, within SO0560.2 at 583.099 kb on - strand, within SO0560.2 at 583.125 kb on + strand, within SO0560.2 at 583.130 kb on + strand, within SO0560.2 at 583.203 kb on - strand, within SO0560.2
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 579,554 - SO0559 0.39 -0.4 579,594 - SO0559 0.44 -0.5 579,594 - SO0559 0.44 +0.3 579,636 - SO0559 0.49 +0.3 579,645 + SO0559 0.50 -1.7 579,695 + SO0559 0.56 +0.6 579,703 - SO0559 0.57 -1.6 579,703 - SO0559 0.57 -0.3 579,759 - SO0559 0.64 +1.0 579,829 + SO0559 0.72 +0.6 579,837 - SO0559 0.73 -1.0 579,841 + SO0559 0.74 +1.0 579,908 + SO0559 0.82 -0.0 579,936 - SO0559 0.85 -0.2 579,936 - SO0559 0.85 +0.5 579,936 - SO0559 0.85 -1.4 580,053 + +0.0 580,061 - -0.3 580,061 - -0.1 580,281 + +0.2 580,305 + -0.3 580,305 + +1.4 580,305 + +0.1 580,305 + -0.2 580,305 + +0.3 580,305 + -0.0 580,305 + +0.5 580,305 + -0.7 580,305 + +0.6 580,313 - +0.0 580,313 - +0.1 580,313 - +0.0 580,313 - +1.0 580,313 - +0.3 580,320 + -0.2 580,340 + -1.0 580,346 - +0.3 580,346 - -0.2 580,346 - -0.5 580,346 - +0.0 580,346 - +0.1 580,622 + +0.4 580,624 + -0.4 580,632 + +0.2 580,632 + -0.1 580,640 - -0.8 580,697 - fhs SO0560 0.12 -0.1 580,709 - fhs SO0560 0.12 +0.1 580,731 - fhs SO0560 0.14 +0.3 580,744 - fhs SO0560 0.15 -1.0 580,749 + fhs SO0560 0.15 +0.7 580,774 + fhs SO0560 0.16 +0.9 580,893 + fhs SO0560 0.23 -0.2 580,928 + fhs SO0560 0.25 -0.2 580,962 + fhs SO0560 0.27 +1.0 580,962 + fhs SO0560 0.27 -0.4 580,984 + fhs SO0560 0.29 +1.1 580,992 - fhs SO0560 0.29 +0.0 581,007 + fhs SO0560 0.30 -0.0 581,098 + fhs SO0560 0.35 +0.0 581,098 + fhs SO0560 0.35 +0.8 581,106 - fhs SO0560 0.36 -0.4 581,106 - fhs SO0560 0.36 +0.6 581,106 - fhs SO0560 0.36 -0.4 581,220 + fhs SO0560 0.42 +0.3 581,228 - fhs SO0560 0.43 +0.2 581,327 + fhs SO0560 0.49 +0.6 581,338 + fhs SO0560 0.49 -0.4 581,396 + fhs SO0560 0.53 +0.0 581,404 - fhs SO0560 0.53 +0.6 581,419 - fhs SO0560 0.54 +0.6 581,497 - fhs SO0560 0.58 -1.0 581,517 - fhs SO0560 0.60 +0.0 581,522 + fhs SO0560 0.60 -0.2 581,522 + fhs SO0560 0.60 +0.1 581,522 + fhs SO0560 0.60 +0.5 581,522 + fhs SO0560 0.60 +0.2 581,522 + fhs SO0560 0.60 +0.2 581,522 + fhs SO0560 0.60 +0.9 581,530 - fhs SO0560 0.60 +1.3 581,530 - fhs SO0560 0.60 -0.8 581,530 - fhs SO0560 0.60 -0.1 581,530 - fhs SO0560 0.60 +0.3 581,530 - fhs SO0560 0.60 +0.2 581,530 - fhs SO0560 0.60 -0.3 581,530 - fhs SO0560 0.60 +0.6 581,540 - fhs SO0560 0.61 +0.3 581,761 + fhs SO0560 0.74 +0.6 581,773 + fhs SO0560 0.75 +0.1 581,779 + fhs SO0560 0.75 +0.7 581,780 - fhs SO0560 0.75 +0.4 581,781 - fhs SO0560 0.75 +1.2 581,893 + fhs SO0560 0.82 +0.2 581,893 + fhs SO0560 0.82 +0.5 581,899 + fhs SO0560 0.82 +0.1 582,023 + fhs SO0560 0.89 -0.4 582,030 + fhs SO0560 0.90 +0.2 582,030 + fhs SO0560 0.90 +0.3 582,030 + fhs SO0560 0.90 +0.1 582,030 + fhs SO0560 0.90 -0.0 582,030 + fhs SO0560 0.90 +1.0 582,030 + fhs SO0560 0.90 +0.2 582,030 + fhs SO0560 0.90 -0.6 582,030 + fhs SO0560 0.90 +0.3 582,030 + fhs SO0560 0.90 -2.3 582,030 + fhs SO0560 0.90 +1.3 582,030 + fhs SO0560 0.90 -0.2 582,038 - -0.4 582,038 - +0.0 582,038 - -0.1 582,038 - -0.1 582,038 - -0.1 582,043 + -1.3 582,145 - -0.4 582,148 + +0.3 582,148 + -1.1 582,148 + +0.2 582,156 - -0.0 582,208 + -1.0 582,272 + +0.8 582,306 - +0.6 582,323 + SO_0561 0.15 -1.0 582,392 - SO_0561 0.39 +0.3 582,420 + SO_0561 0.49 -0.4 582,443 + SO_0561 0.57 -0.9 582,455 + SO_0561 0.61 +0.0 582,458 - SO_0561 0.62 -0.6 582,463 + SO_0561 0.64 -0.1 582,486 + SO_0561 0.72 -0.3 582,486 - SO_0561 0.72 +0.0 582,521 + SO_0561 0.84 -0.1 582,521 + SO_0561 0.84 -0.0 582,521 + SO_0561 0.84 -0.3 582,521 + SO_0561 0.84 +0.3 582,529 - SO_0561 0.86 -0.3 582,529 - SO_0561 0.86 -0.5 582,529 - SO_0561 0.86 +0.3 582,529 - SO_0561 0.86 +0.1 582,529 - SO_0561 0.86 -1.1 582,539 - +0.1 582,608 - -0.2 582,724 - -0.6 582,806 - SO0560.2 0.13 -0.1 582,848 - SO0560.2 0.16 +0.5 582,985 + SO0560.2 0.27 -0.8 583,056 + SO0560.2 0.32 +0.3 583,099 - SO0560.2 0.35 -0.3 583,099 - SO0560.2 0.35 -0.9 583,125 + SO0560.2 0.37 -0.4 583,130 + SO0560.2 0.38 -0.2 583,203 - SO0560.2 0.43 -0.1
Or see this region's nucleotide sequence