Experiment: m.b. Choline Lysine 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08890 and PGA1_c08900 are separated by 96 nucleotides PGA1_c08900 and PGA1_c08910 are separated by 245 nucleotides
PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455
_c08890
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 918.607 kb on + strand, within PGA1_c08890 at 918.610 kb on - strand, within PGA1_c08890 at 918.699 kb on + strand, within PGA1_c08890 at 918.712 kb on + strand, within PGA1_c08890 at 918.765 kb on - strand, within PGA1_c08890 at 919.092 kb on + strand, within PGA1_c08890 at 919.095 kb on - strand, within PGA1_c08890 at 919.100 kb on - strand, within PGA1_c08890 at 919.194 kb on - strand, within PGA1_c08890 at 919.220 kb on - strand, within PGA1_c08890 at 919.343 kb on + strand at 919.348 kb on + strand at 919.351 kb on - strand at 919.380 kb on + strand at 919.433 kb on + strand at 919.447 kb on + strand at 919.493 kb on + strand at 919.500 kb on + strand at 919.505 kb on + strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.592 kb on + strand at 919.685 kb on + strand, within PGA1_c08900 at 919.703 kb on - strand, within PGA1_c08900 at 919.713 kb on - strand, within PGA1_c08900 at 919.737 kb on - strand, within PGA1_c08900 at 919.815 kb on - strand, within PGA1_c08900 at 919.950 kb on + strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 920.051 kb on + strand, within PGA1_c08900 at 920.054 kb on - strand, within PGA1_c08900 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900 at 920.540 kb on - strand, within PGA1_c08900 at 920.562 kb on - strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.611 kb on + strand, within PGA1_c08900 at 920.632 kb on - strand, within PGA1_c08900 at 920.651 kb on - strand, within PGA1_c08900 at 920.653 kb on + strand, within PGA1_c08900 at 920.656 kb on - strand, within PGA1_c08900 at 920.661 kb on - strand, within PGA1_c08900 at 920.709 kb on + strand, within PGA1_c08900 at 920.731 kb on + strand at 920.766 kb on + strand at 920.784 kb on - strand at 920.790 kb on + strand at 920.823 kb on + strand at 920.875 kb on + strand at 920.886 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.942 kb on + strand at 920.945 kb on - strand at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM remove 918,607 + PGA1_c08890 0.25 -1.0 918,610 - PGA1_c08890 0.26 +1.3 918,699 + PGA1_c08890 0.33 +1.3 918,712 + PGA1_c08890 0.35 -1.8 918,765 - PGA1_c08890 0.39 +1.2 919,092 + PGA1_c08890 0.68 -1.6 919,095 - PGA1_c08890 0.68 +1.7 919,100 - PGA1_c08890 0.69 -0.8 919,194 - PGA1_c08890 0.77 +0.9 919,220 - PGA1_c08890 0.79 +0.8 919,343 + +0.4 919,348 + +0.7 919,351 - +1.3 919,380 + +2.3 919,433 + +1.4 919,447 + +0.0 919,493 + +2.4 919,500 + +0.8 919,505 + +0.3 919,513 - +0.8 919,513 - +0.8 919,513 - +0.5 919,513 - +2.5 919,513 - -1.4 919,592 + +0.0 919,685 + PGA1_c08900 0.10 -0.8 919,703 - PGA1_c08900 0.12 -0.4 919,713 - PGA1_c08900 0.12 +0.3 919,737 - PGA1_c08900 0.14 +2.0 919,815 - PGA1_c08900 0.20 +1.0 919,950 + PGA1_c08900 0.31 +0.7 919,958 - PGA1_c08900 0.31 +0.3 919,958 - PGA1_c08900 0.31 +0.7 920,051 + PGA1_c08900 0.39 +0.1 920,054 - PGA1_c08900 0.39 +0.6 920,110 + PGA1_c08900 0.43 +0.5 920,112 - PGA1_c08900 0.43 +1.6 920,121 + PGA1_c08900 0.44 -1.8 920,129 - PGA1_c08900 0.45 +1.8 920,306 - PGA1_c08900 0.58 +1.3 920,336 - PGA1_c08900 0.61 +1.6 920,369 - PGA1_c08900 0.63 +0.3 920,374 - PGA1_c08900 0.64 +1.9 920,380 - PGA1_c08900 0.64 +0.9 920,540 - PGA1_c08900 0.76 +0.4 920,562 - PGA1_c08900 0.78 +0.1 920,575 + PGA1_c08900 0.79 +1.0 920,575 + PGA1_c08900 0.79 +1.6 920,583 - PGA1_c08900 0.80 +1.1 920,583 - PGA1_c08900 0.80 +0.9 920,611 + PGA1_c08900 0.82 +0.7 920,632 - PGA1_c08900 0.84 +0.2 920,651 - PGA1_c08900 0.85 +0.5 920,653 + PGA1_c08900 0.85 -1.2 920,656 - PGA1_c08900 0.85 +0.3 920,661 - PGA1_c08900 0.86 +0.9 920,709 + PGA1_c08900 0.89 +0.5 920,731 + +1.3 920,766 + +2.0 920,784 - -0.1 920,790 + +0.5 920,823 + -0.7 920,875 + -1.3 920,886 + +1.3 920,914 + -0.5 920,914 + -0.1 920,914 + -1.6 920,919 + +1.0 920,922 - +1.7 920,922 - +0.4 920,922 - +1.2 920,927 - +0.2 920,927 - +1.1 920,927 - +0.2 920,942 + -1.8 920,945 - +0.1 921,663 - +0.6 921,708 + -0.3 921,708 + -0.4 921,750 + +0.4 921,760 - -0.1 921,839 - +0.4
Or see this region's nucleotide sequence