Experiment: m.b. Choline Lysine 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08510 and PGA1_c08520 overlap by 8 nucleotides PGA1_c08520 and PGA1_c08530 overlap by 4 nucleotides PGA1_c08530 and PGA1_c08540 are separated by 259 nucleotides
PGA1_c08510: PGA1_c08510 - RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup), at 878,669 to 879,328
_c08510
PGA1_c08520: PGA1_c08520 - hypothetical protein, at 879,321 to 879,797
_c08520
PGA1_c08530: PGA1_c08530 - Predicted integral membrane protein, at 879,794 to 880,273
_c08530
PGA1_c08540: PGA1_c08540 - response regulator PleD, at 880,533 to 881,963
_c08540
Position (kb) 879
880
881 Strain fitness (log2 ratio) -1
0
1 at 879.305 kb on + strand at 879.560 kb on + strand, within PGA1_c08520 at 880.473 kb on - strand at 880.632 kb on + strand at 880.678 kb on + strand, within PGA1_c08540 at 880.678 kb on + strand, within PGA1_c08540 at 880.800 kb on + strand, within PGA1_c08540 at 880.841 kb on - strand, within PGA1_c08540 at 880.903 kb on + strand, within PGA1_c08540 at 880.903 kb on + strand, within PGA1_c08540 at 880.936 kb on + strand, within PGA1_c08540 at 880.944 kb on - strand, within PGA1_c08540 at 880.953 kb on - strand, within PGA1_c08540 at 881.006 kb on + strand, within PGA1_c08540 at 881.025 kb on - strand, within PGA1_c08540 at 881.110 kb on + strand, within PGA1_c08540 at 881.145 kb on - strand, within PGA1_c08540 at 881.201 kb on - strand, within PGA1_c08540
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM remove 879,305 + +0.7 879,560 + PGA1_c08520 0.50 -0.5 880,473 - +0.6 880,632 + +1.3 880,678 + PGA1_c08540 0.10 +1.5 880,678 + PGA1_c08540 0.10 -0.5 880,800 + PGA1_c08540 0.19 -0.4 880,841 - PGA1_c08540 0.22 -1.2 880,903 + PGA1_c08540 0.26 +0.0 880,903 + PGA1_c08540 0.26 +0.7 880,936 + PGA1_c08540 0.28 +1.5 880,944 - PGA1_c08540 0.29 -0.3 880,953 - PGA1_c08540 0.29 +0.2 881,006 + PGA1_c08540 0.33 -0.5 881,025 - PGA1_c08540 0.34 -0.1 881,110 + PGA1_c08540 0.40 +0.5 881,145 - PGA1_c08540 0.43 +1.4 881,201 - PGA1_c08540 0.47 +1.3
Or see this region's nucleotide sequence