Experiment: m.b. Choline Lysine 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07970 and PGA1_c07980 are separated by 46 nucleotides PGA1_c07980 and PGA1_c07990 overlap by 1 nucleotides PGA1_c07990 and PGA1_c08000 are separated by 44 nucleotides
PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187
_c07970
PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031
_c07980
PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852
_c07990
PGA1_c08000: PGA1_c08000 - DNA polymerase III, gamma/tau subunits, at 829,897 to 831,018
_c08000
Position (kb) 828
829
830 Strain fitness (log2 ratio) -2
-1
0
1
2 at 827.280 kb on - strand at 827.280 kb on - strand at 827.284 kb on - strand at 827.290 kb on + strand at 827.326 kb on + strand at 827.363 kb on + strand, within PGA1_c07970 at 827.399 kb on + strand, within PGA1_c07970 at 827.409 kb on + strand, within PGA1_c07970 at 827.409 kb on - strand, within PGA1_c07970 at 827.412 kb on - strand, within PGA1_c07970 at 827.431 kb on + strand, within PGA1_c07970 at 827.459 kb on - strand, within PGA1_c07970 at 827.549 kb on - strand, within PGA1_c07970 at 827.621 kb on + strand, within PGA1_c07970 at 827.628 kb on + strand, within PGA1_c07970 at 827.628 kb on + strand, within PGA1_c07970 at 827.634 kb on - strand, within PGA1_c07970 at 827.636 kb on + strand, within PGA1_c07970 at 827.636 kb on - strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.666 kb on + strand, within PGA1_c07970 at 827.684 kb on - strand, within PGA1_c07970 at 827.744 kb on + strand, within PGA1_c07970 at 827.947 kb on - strand, within PGA1_c07970 at 827.950 kb on + strand, within PGA1_c07970 at 827.950 kb on + strand, within PGA1_c07970 at 827.958 kb on - strand, within PGA1_c07970 at 827.983 kb on - strand, within PGA1_c07970 at 827.998 kb on + strand, within PGA1_c07970 at 828.006 kb on - strand, within PGA1_c07970 at 828.119 kb on + strand at 828.281 kb on + strand at 828.281 kb on + strand at 828.296 kb on - strand at 828.348 kb on + strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.417 kb on + strand, within PGA1_c07980 at 828.529 kb on - strand, within PGA1_c07980 at 828.530 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.628 kb on - strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.654 kb on - strand, within PGA1_c07980 at 828.763 kb on + strand, within PGA1_c07980 at 828.793 kb on + strand, within PGA1_c07980 at 828.800 kb on - strand, within PGA1_c07980 at 828.884 kb on + strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.938 kb on - strand, within PGA1_c07980 at 828.991 kb on - strand at 828.994 kb on - strand at 829.035 kb on - strand at 829.134 kb on - strand, within PGA1_c07990 at 829.150 kb on - strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.163 kb on - strand, within PGA1_c07990 at 829.201 kb on + strand, within PGA1_c07990 at 829.264 kb on + strand, within PGA1_c07990 at 829.272 kb on - strand, within PGA1_c07990 at 829.315 kb on - strand, within PGA1_c07990 at 829.326 kb on - strand, within PGA1_c07990 at 829.499 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.507 kb on + strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.515 kb on - strand, within PGA1_c07990 at 829.525 kb on - strand, within PGA1_c07990 at 829.544 kb on + strand, within PGA1_c07990 at 829.636 kb on - strand, within PGA1_c07990 at 829.681 kb on + strand, within PGA1_c07990 at 829.723 kb on - strand, within PGA1_c07990 at 829.747 kb on - strand, within PGA1_c07990 at 829.801 kb on + strand at 829.857 kb on + strand at 829.872 kb on - strand at 829.898 kb on - strand at 829.912 kb on + strand at 829.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM remove 827,280 - -0.3 827,280 - -0.7 827,284 - -1.3 827,290 + +2.3 827,326 + +0.5 827,363 + PGA1_c07970 0.12 +1.9 827,399 + PGA1_c07970 0.15 +0.2 827,409 + PGA1_c07970 0.17 +0.9 827,409 - PGA1_c07970 0.17 -1.5 827,412 - PGA1_c07970 0.17 -1.9 827,431 + PGA1_c07970 0.19 +0.8 827,459 - PGA1_c07970 0.22 +0.1 827,549 - PGA1_c07970 0.32 -0.3 827,621 + PGA1_c07970 0.39 +2.2 827,628 + PGA1_c07970 0.40 +0.6 827,628 + PGA1_c07970 0.40 -0.9 827,634 - PGA1_c07970 0.41 +0.2 827,636 + PGA1_c07970 0.41 +1.1 827,636 - PGA1_c07970 0.41 -1.1 827,648 + PGA1_c07970 0.42 -0.5 827,648 + PGA1_c07970 0.42 -0.2 827,648 + PGA1_c07970 0.42 -1.5 827,666 + PGA1_c07970 0.44 -1.7 827,684 - PGA1_c07970 0.46 +0.7 827,744 + PGA1_c07970 0.52 +2.1 827,947 - PGA1_c07970 0.74 -1.3 827,950 + PGA1_c07970 0.74 -0.7 827,950 + PGA1_c07970 0.74 +2.1 827,958 - PGA1_c07970 0.75 +0.1 827,983 - PGA1_c07970 0.78 -0.7 827,998 + PGA1_c07970 0.80 +0.6 828,006 - PGA1_c07970 0.80 +0.3 828,119 + +0.1 828,281 + +0.1 828,281 + +0.1 828,296 - -1.1 828,348 + PGA1_c07980 0.14 -0.9 828,356 - PGA1_c07980 0.15 -0.9 828,356 - PGA1_c07980 0.15 -1.3 828,417 + PGA1_c07980 0.23 -0.9 828,529 - PGA1_c07980 0.37 +0.7 828,530 + PGA1_c07980 0.37 +0.5 828,620 + PGA1_c07980 0.48 +0.3 828,620 + PGA1_c07980 0.48 -0.9 828,628 - PGA1_c07980 0.49 +2.1 828,635 + PGA1_c07980 0.50 -1.5 828,635 + PGA1_c07980 0.50 -0.9 828,654 - PGA1_c07980 0.53 -0.3 828,763 + PGA1_c07980 0.66 +0.3 828,793 + PGA1_c07980 0.70 -0.5 828,800 - PGA1_c07980 0.71 -0.7 828,884 + PGA1_c07980 0.81 +1.1 828,892 - PGA1_c07980 0.82 -0.2 828,892 - PGA1_c07980 0.82 +0.1 828,892 - PGA1_c07980 0.82 -1.3 828,892 - PGA1_c07980 0.82 -0.5 828,938 - PGA1_c07980 0.88 +0.7 828,991 - +1.1 828,994 - +1.3 829,035 - +0.6 829,134 - PGA1_c07990 0.13 +1.9 829,150 - PGA1_c07990 0.14 +0.5 829,155 + PGA1_c07990 0.15 +1.4 829,155 + PGA1_c07990 0.15 -0.3 829,163 - PGA1_c07990 0.16 -0.9 829,201 + PGA1_c07990 0.21 +0.7 829,264 + PGA1_c07990 0.28 +0.1 829,272 - PGA1_c07990 0.29 +1.1 829,315 - PGA1_c07990 0.35 +0.1 829,326 - PGA1_c07990 0.36 -0.5 829,499 + PGA1_c07990 0.57 +1.1 829,507 + PGA1_c07990 0.58 +1.1 829,507 + PGA1_c07990 0.58 +0.1 829,515 - PGA1_c07990 0.59 -0.5 829,515 - PGA1_c07990 0.59 +0.5 829,525 - PGA1_c07990 0.60 +1.1 829,544 + PGA1_c07990 0.62 -1.3 829,636 - PGA1_c07990 0.74 -1.1 829,681 + PGA1_c07990 0.79 +0.1 829,723 - PGA1_c07990 0.84 +0.1 829,747 - PGA1_c07990 0.87 -0.9 829,801 + -0.5 829,857 + +1.1 829,872 - -0.5 829,898 - +0.1 829,912 + +1.1 829,912 + +2.7
Or see this region's nucleotide sequence