Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07820

Experiment: m.b. Choline Lysine 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07810 and PGA1_c07820 are separated by 34 nucleotidesPGA1_c07820 and PGA1_c07830 are separated by 4 nucleotides PGA1_c07810: PGA1_c07810 - aminotransferase class-III, at 807,852 to 809,225 _c07810 PGA1_c07820: PGA1_c07820 - putative peptidase M22, at 809,260 to 810,444 _c07820 PGA1_c07830: PGA1_c07830 - acetylornithine deacetylase ArgE, at 810,449 to 811,603 _c07830 Position (kb) 809 810 811Strain fitness (log2 ratio) -2 -1 0 1 2at 808.305 kb on - strand, within PGA1_c07810at 808.312 kb on + strand, within PGA1_c07810at 808.312 kb on + strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.320 kb on - strand, within PGA1_c07810at 808.325 kb on - strand, within PGA1_c07810at 808.342 kb on + strand, within PGA1_c07810at 808.350 kb on - strand, within PGA1_c07810at 808.396 kb on - strand, within PGA1_c07810at 808.420 kb on + strand, within PGA1_c07810at 808.420 kb on + strand, within PGA1_c07810at 808.441 kb on + strand, within PGA1_c07810at 808.458 kb on - strand, within PGA1_c07810at 808.507 kb on - strand, within PGA1_c07810at 808.515 kb on + strand, within PGA1_c07810at 808.533 kb on + strand, within PGA1_c07810at 808.543 kb on + strand, within PGA1_c07810at 808.631 kb on + strand, within PGA1_c07810at 808.650 kb on - strand, within PGA1_c07810at 808.722 kb on + strand, within PGA1_c07810at 808.732 kb on + strand, within PGA1_c07810at 808.732 kb on + strand, within PGA1_c07810at 808.740 kb on + strand, within PGA1_c07810at 808.794 kb on + strand, within PGA1_c07810at 808.797 kb on - strand, within PGA1_c07810at 808.818 kb on + strand, within PGA1_c07810at 808.885 kb on + strand, within PGA1_c07810at 808.886 kb on + strand, within PGA1_c07810at 808.894 kb on - strand, within PGA1_c07810at 808.894 kb on - strand, within PGA1_c07810at 808.895 kb on + strand, within PGA1_c07810at 808.955 kb on - strand, within PGA1_c07810at 808.961 kb on + strand, within PGA1_c07810at 809.002 kb on - strand, within PGA1_c07810at 809.060 kb on - strand, within PGA1_c07810at 809.088 kb on + strandat 809.096 kb on - strandat 809.096 kb on - strandat 809.101 kb on - strandat 809.119 kb on - strandat 809.125 kb on + strandat 809.173 kb on - strandat 809.173 kb on - strandat 809.195 kb on - strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.214 kb on + strandat 809.269 kb on + strandat 809.269 kb on + strandat 809.269 kb on + strandat 809.269 kb on + strandat 809.270 kb on - strandat 809.277 kb on - strandat 809.277 kb on - strandat 809.279 kb on + strandat 809.318 kb on - strandat 809.369 kb on + strandat 809.382 kb on - strand, within PGA1_c07820at 809.444 kb on + strand, within PGA1_c07820at 809.484 kb on - strand, within PGA1_c07820at 809.517 kb on - strand, within PGA1_c07820at 809.517 kb on - strand, within PGA1_c07820at 809.623 kb on + strand, within PGA1_c07820at 809.658 kb on + strand, within PGA1_c07820at 809.658 kb on + strand, within PGA1_c07820at 809.716 kb on - strand, within PGA1_c07820at 809.766 kb on + strand, within PGA1_c07820at 809.766 kb on + strand, within PGA1_c07820at 809.794 kb on - strand, within PGA1_c07820at 809.796 kb on + strand, within PGA1_c07820at 809.825 kb on - strand, within PGA1_c07820at 809.825 kb on - strand, within PGA1_c07820at 809.860 kb on - strand, within PGA1_c07820at 809.889 kb on + strand, within PGA1_c07820at 809.889 kb on + strand, within PGA1_c07820at 809.897 kb on - strand, within PGA1_c07820at 809.935 kb on - strand, within PGA1_c07820at 809.945 kb on - strand, within PGA1_c07820at 809.953 kb on + strand, within PGA1_c07820at 810.110 kb on - strand, within PGA1_c07820at 810.110 kb on - strand, within PGA1_c07820at 810.232 kb on + strand, within PGA1_c07820at 810.237 kb on + strand, within PGA1_c07820at 810.237 kb on + strand, within PGA1_c07820at 810.245 kb on - strand, within PGA1_c07820at 810.258 kb on + strand, within PGA1_c07820at 810.259 kb on - strand, within PGA1_c07820at 810.268 kb on + strand, within PGA1_c07820at 810.285 kb on + strand, within PGA1_c07820at 810.292 kb on + strand, within PGA1_c07820at 810.293 kb on - strand, within PGA1_c07820at 810.307 kb on + strand, within PGA1_c07820at 810.313 kb on - strand, within PGA1_c07820at 810.347 kb on + strandat 810.347 kb on + strandat 810.360 kb on - strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.410 kb on + strandat 810.418 kb on - strandat 810.473 kb on - strandat 810.473 kb on - strandat 810.473 kb on - strandat 810.546 kb on + strandat 810.546 kb on + strandat 810.546 kb on + strandat 810.554 kb on - strandat 810.554 kb on - strandat 810.696 kb on - strand, within PGA1_c07830at 810.733 kb on + strand, within PGA1_c07830at 810.733 kb on + strand, within PGA1_c07830at 810.814 kb on - strand, within PGA1_c07830at 810.854 kb on - strand, within PGA1_c07830at 810.897 kb on - strand, within PGA1_c07830at 810.930 kb on + strand, within PGA1_c07830at 810.964 kb on + strand, within PGA1_c07830at 810.983 kb on - strand, within PGA1_c07830at 811.002 kb on + strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.010 kb on - strand, within PGA1_c07830at 811.043 kb on + strand, within PGA1_c07830at 811.048 kb on + strand, within PGA1_c07830at 811.104 kb on + strand, within PGA1_c07830at 811.113 kb on - strand, within PGA1_c07830at 811.125 kb on + strand, within PGA1_c07830at 811.133 kb on - strand, within PGA1_c07830at 811.143 kb on - strand, within PGA1_c07830at 811.150 kb on + strand, within PGA1_c07830at 811.153 kb on - strand, within PGA1_c07830at 811.158 kb on - strand, within PGA1_c07830at 811.160 kb on + strand, within PGA1_c07830at 811.229 kb on + strand, within PGA1_c07830at 811.229 kb on + strand, within PGA1_c07830at 811.255 kb on - strand, within PGA1_c07830at 811.327 kb on + strand, within PGA1_c07830at 811.362 kb on - strand, within PGA1_c07830at 811.363 kb on + strand, within PGA1_c07830at 811.372 kb on - strand, within PGA1_c07830at 811.406 kb on - strand, within PGA1_c07830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM
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808,305 - PGA1_c07810 0.33 +1.1
808,312 + PGA1_c07810 0.33 -0.2
808,312 + PGA1_c07810 0.33 +0.3
808,320 - PGA1_c07810 0.34 +1.1
808,320 - PGA1_c07810 0.34 -0.2
808,320 - PGA1_c07810 0.34 -1.5
808,320 - PGA1_c07810 0.34 -0.3
808,325 - PGA1_c07810 0.34 -0.7
808,342 + PGA1_c07810 0.36 +2.6
808,350 - PGA1_c07810 0.36 +0.8
808,396 - PGA1_c07810 0.40 +0.5
808,420 + PGA1_c07810 0.41 -0.5
808,420 + PGA1_c07810 0.41 -0.1
808,441 + PGA1_c07810 0.43 +0.3
808,458 - PGA1_c07810 0.44 +0.1
808,507 - PGA1_c07810 0.48 +0.6
808,515 + PGA1_c07810 0.48 +1.5
808,533 + PGA1_c07810 0.50 -0.1
808,543 + PGA1_c07810 0.50 +1.5
808,631 + PGA1_c07810 0.57 +1.2
808,650 - PGA1_c07810 0.58 -0.1
808,722 + PGA1_c07810 0.63 +1.8
808,732 + PGA1_c07810 0.64 -0.9
808,732 + PGA1_c07810 0.64 -0.1
808,740 + PGA1_c07810 0.65 -0.5
808,794 + PGA1_c07810 0.69 -0.4
808,797 - PGA1_c07810 0.69 -0.6
808,818 + PGA1_c07810 0.70 +0.3
808,885 + PGA1_c07810 0.75 +0.3
808,886 + PGA1_c07810 0.75 +0.5
808,894 - PGA1_c07810 0.76 -1.3
808,894 - PGA1_c07810 0.76 -0.7
808,895 + PGA1_c07810 0.76 -0.6
808,955 - PGA1_c07810 0.80 -0.2
808,961 + PGA1_c07810 0.81 -0.1
809,002 - PGA1_c07810 0.84 -1.1
809,060 - PGA1_c07810 0.88 -0.5
809,088 + +0.1
809,096 - -0.7
809,096 - +0.3
809,101 - -0.7
809,119 - +0.3
809,125 + -0.9
809,173 - +1.5
809,173 - +1.1
809,195 - -0.2
809,214 + +1.1
809,214 + +0.2
809,214 + +0.1
809,214 + -2.3
809,214 + +0.6
809,269 + -0.4
809,269 + +0.1
809,269 + -1.3
809,269 + +0.1
809,270 - +0.1
809,277 - -0.1
809,277 - -1.6
809,279 + -0.9
809,318 - +0.6
809,369 + +1.2
809,382 - PGA1_c07820 0.10 +0.4
809,444 + PGA1_c07820 0.16 +1.1
809,484 - PGA1_c07820 0.19 +1.6
809,517 - PGA1_c07820 0.22 +0.6
809,517 - PGA1_c07820 0.22 -0.4
809,623 + PGA1_c07820 0.31 +0.5
809,658 + PGA1_c07820 0.34 -0.6
809,658 + PGA1_c07820 0.34 -1.3
809,716 - PGA1_c07820 0.38 +0.5
809,766 + PGA1_c07820 0.43 -0.7
809,766 + PGA1_c07820 0.43 +0.6
809,794 - PGA1_c07820 0.45 +0.5
809,796 + PGA1_c07820 0.45 +0.6
809,825 - PGA1_c07820 0.48 -1.8
809,825 - PGA1_c07820 0.48 +0.4
809,860 - PGA1_c07820 0.51 +0.4
809,889 + PGA1_c07820 0.53 -0.9
809,889 + PGA1_c07820 0.53 -0.8
809,897 - PGA1_c07820 0.54 -0.4
809,935 - PGA1_c07820 0.57 -0.3
809,945 - PGA1_c07820 0.58 +1.1
809,953 + PGA1_c07820 0.58 +0.5
810,110 - PGA1_c07820 0.72 -0.9
810,110 - PGA1_c07820 0.72 +0.1
810,232 + PGA1_c07820 0.82 +0.1
810,237 + PGA1_c07820 0.82 -0.5
810,237 + PGA1_c07820 0.82 -1.4
810,245 - PGA1_c07820 0.83 -0.6
810,258 + PGA1_c07820 0.84 -0.9
810,259 - PGA1_c07820 0.84 -0.1
810,268 + PGA1_c07820 0.85 -1.3
810,285 + PGA1_c07820 0.86 -0.3
810,292 + PGA1_c07820 0.87 -0.9
810,293 - PGA1_c07820 0.87 -0.5
810,307 + PGA1_c07820 0.88 -0.9
810,313 - PGA1_c07820 0.89 -2.7
810,347 + -1.9
810,347 + -0.5
810,360 - -0.4
810,410 + -0.1
810,410 + +1.2
810,410 + -0.7
810,410 + +1.7
810,410 + +0.1
810,418 - +0.3
810,473 - +1.2
810,473 - +0.1
810,473 - -1.7
810,546 + -1.3
810,546 + -1.5
810,546 + +0.1
810,554 - -1.3
810,554 - -0.0
810,696 - PGA1_c07830 0.21 +0.1
810,733 + PGA1_c07830 0.25 +0.3
810,733 + PGA1_c07830 0.25 +0.1
810,814 - PGA1_c07830 0.32 +1.1
810,854 - PGA1_c07830 0.35 +0.3
810,897 - PGA1_c07830 0.39 -0.1
810,930 + PGA1_c07830 0.42 +0.8
810,964 + PGA1_c07830 0.45 -0.3
810,983 - PGA1_c07830 0.46 +1.1
811,002 + PGA1_c07830 0.48 +0.6
811,010 - PGA1_c07830 0.49 +0.4
811,010 - PGA1_c07830 0.49 -0.3
811,010 - PGA1_c07830 0.49 -0.2
811,043 + PGA1_c07830 0.51 -0.2
811,048 + PGA1_c07830 0.52 -0.5
811,104 + PGA1_c07830 0.57 +1.1
811,113 - PGA1_c07830 0.57 +1.3
811,125 + PGA1_c07830 0.59 +1.5
811,133 - PGA1_c07830 0.59 +0.5
811,143 - PGA1_c07830 0.60 -1.5
811,150 + PGA1_c07830 0.61 -0.1
811,153 - PGA1_c07830 0.61 +0.0
811,158 - PGA1_c07830 0.61 -0.5
811,160 + PGA1_c07830 0.62 +0.6
811,229 + PGA1_c07830 0.68 +2.6
811,229 + PGA1_c07830 0.68 +0.5
811,255 - PGA1_c07830 0.70 -0.5
811,327 + PGA1_c07830 0.76 +0.7
811,362 - PGA1_c07830 0.79 -0.5
811,363 + PGA1_c07830 0.79 -1.1
811,372 - PGA1_c07830 0.80 +0.1
811,406 - PGA1_c07830 0.83 +1.1

Or see this region's nucleotide sequence