Experiment: m.b. Choline Lysine 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07750 and PGA1_c07760 are separated by 12 nucleotides PGA1_c07760 and PGA1_c07770 are separated by 12 nucleotides PGA1_c07770 and PGA1_c07780 are separated by 116 nucleotides
PGA1_c07750: PGA1_c07750 - histidinol dehydrogenase HisD, at 801,821 to 803,128
_c07750
PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469
_c07760
PGA1_c07770: PGA1_c07770 - TRAP transporter, subunit DctQ, at 804,482 to 804,994
_c07770
PGA1_c07780: PGA1_c07780 - TRAP transporter, subunit DctP, at 805,111 to 806,256
_c07780
Position (kb) 803
804
805 Strain fitness (log2 ratio) -2
-1
0
1
2 at 802.142 kb on + strand, within PGA1_c07750 at 802.150 kb on - strand, within PGA1_c07750 at 802.199 kb on - strand, within PGA1_c07750 at 802.520 kb on + strand, within PGA1_c07750 at 802.535 kb on - strand, within PGA1_c07750 at 802.552 kb on + strand, within PGA1_c07750 at 802.560 kb on - strand, within PGA1_c07750 at 802.560 kb on - strand, within PGA1_c07750 at 802.569 kb on - strand, within PGA1_c07750 at 802.584 kb on - strand, within PGA1_c07750 at 802.822 kb on - strand, within PGA1_c07750 at 802.875 kb on - strand, within PGA1_c07750 at 802.911 kb on + strand, within PGA1_c07750 at 802.930 kb on - strand, within PGA1_c07750 at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.080 kb on + strand at 803.088 kb on - strand at 803.124 kb on - strand at 803.137 kb on - strand at 803.195 kb on + strand at 803.198 kb on - strand at 803.216 kb on + strand at 803.216 kb on + strand at 803.224 kb on - strand at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.334 kb on + strand, within PGA1_c07760 at 803.346 kb on + strand, within PGA1_c07760 at 803.431 kb on + strand, within PGA1_c07760 at 803.433 kb on + strand, within PGA1_c07760 at 803.439 kb on - strand, within PGA1_c07760 at 803.515 kb on + strand, within PGA1_c07760 at 803.543 kb on + strand, within PGA1_c07760 at 803.550 kb on + strand, within PGA1_c07760 at 803.551 kb on - strand, within PGA1_c07760 at 803.563 kb on + strand, within PGA1_c07760 at 803.587 kb on + strand, within PGA1_c07760 at 803.587 kb on + strand, within PGA1_c07760 at 803.595 kb on - strand, within PGA1_c07760 at 803.603 kb on - strand, within PGA1_c07760 at 803.656 kb on + strand, within PGA1_c07760 at 803.672 kb on - strand, within PGA1_c07760 at 803.683 kb on - strand, within PGA1_c07760 at 803.710 kb on + strand, within PGA1_c07760 at 803.713 kb on - strand, within PGA1_c07760 at 803.755 kb on + strand, within PGA1_c07760 at 803.788 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.823 kb on - strand, within PGA1_c07760 at 803.841 kb on + strand, within PGA1_c07760 at 803.903 kb on + strand, within PGA1_c07760 at 803.906 kb on - strand, within PGA1_c07760 at 803.947 kb on - strand, within PGA1_c07760 at 804.023 kb on + strand, within PGA1_c07760 at 804.126 kb on + strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.139 kb on - strand, within PGA1_c07760 at 804.173 kb on + strand, within PGA1_c07760 at 804.181 kb on - strand, within PGA1_c07760 at 804.260 kb on + strand, within PGA1_c07760 at 804.265 kb on + strand, within PGA1_c07760 at 804.267 kb on - strand, within PGA1_c07760 at 804.282 kb on - strand, within PGA1_c07760 at 804.345 kb on - strand at 804.436 kb on + strand at 804.442 kb on + strand at 804.531 kb on - strand at 804.552 kb on + strand, within PGA1_c07770 at 804.621 kb on - strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.659 kb on + strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.667 kb on - strand, within PGA1_c07770 at 804.711 kb on - strand, within PGA1_c07770 at 804.729 kb on + strand, within PGA1_c07770 at 804.737 kb on - strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.754 kb on + strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.762 kb on - strand, within PGA1_c07770 at 804.767 kb on - strand, within PGA1_c07770 at 804.824 kb on - strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.859 kb on + strand, within PGA1_c07770 at 804.881 kb on + strand, within PGA1_c07770 at 804.918 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.941 kb on + strand, within PGA1_c07770 at 804.950 kb on - strand at 805.007 kb on + strand at 805.031 kb on + strand at 805.039 kb on - strand at 805.070 kb on - strand at 805.108 kb on + strand at 805.137 kb on - strand at 805.137 kb on - strand at 805.145 kb on + strand at 805.196 kb on + strand at 805.196 kb on + strand at 805.204 kb on - strand at 805.237 kb on - strand, within PGA1_c07780 at 805.283 kb on + strand, within PGA1_c07780 at 805.286 kb on - strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.289 kb on + strand, within PGA1_c07780 at 805.297 kb on - strand, within PGA1_c07780 at 805.315 kb on + strand, within PGA1_c07780 at 805.342 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.381 kb on + strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.389 kb on - strand, within PGA1_c07780 at 805.392 kb on - strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.403 kb on + strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.435 kb on - strand, within PGA1_c07780 at 805.449 kb on - strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.455 kb on + strand, within PGA1_c07780 at 805.456 kb on + strand, within PGA1_c07780 at 805.464 kb on - strand, within PGA1_c07780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM remove 802,142 + PGA1_c07750 0.25 +0.5 802,150 - PGA1_c07750 0.25 -1.3 802,199 - PGA1_c07750 0.29 +1.0 802,520 + PGA1_c07750 0.53 +0.3 802,535 - PGA1_c07750 0.55 -0.5 802,552 + PGA1_c07750 0.56 -0.5 802,560 - PGA1_c07750 0.56 +1.6 802,560 - PGA1_c07750 0.56 +2.0 802,569 - PGA1_c07750 0.57 +1.0 802,584 - PGA1_c07750 0.58 -0.3 802,822 - PGA1_c07750 0.77 -1.0 802,875 - PGA1_c07750 0.81 +0.5 802,911 + PGA1_c07750 0.83 -0.4 802,930 - PGA1_c07750 0.85 -0.5 803,061 + +0.0 803,061 + -1.2 803,061 + -2.5 803,061 + -1.0 803,061 + +0.2 803,061 + +0.5 803,069 - +1.0 803,069 - -0.5 803,069 - -1.0 803,069 - -0.3 803,080 + -0.3 803,088 - +0.0 803,124 - +1.0 803,137 - +0.5 803,195 + +1.1 803,198 - +0.1 803,216 + -1.3 803,216 + -0.9 803,224 - -0.9 803,290 + PGA1_c07760 0.11 -0.9 803,290 + PGA1_c07760 0.11 -0.3 803,290 + PGA1_c07760 0.11 +0.1 803,290 + PGA1_c07760 0.11 +0.8 803,298 - PGA1_c07760 0.12 +1.1 803,298 - PGA1_c07760 0.12 +1.6 803,298 - PGA1_c07760 0.12 -0.5 803,298 - PGA1_c07760 0.12 +0.5 803,298 - PGA1_c07760 0.12 +1.1 803,334 + PGA1_c07760 0.15 +0.1 803,346 + PGA1_c07760 0.15 -1.3 803,431 + PGA1_c07760 0.22 -2.3 803,433 + PGA1_c07760 0.22 -0.5 803,439 - PGA1_c07760 0.22 -1.3 803,515 + PGA1_c07760 0.28 +0.5 803,543 + PGA1_c07760 0.30 -1.3 803,550 + PGA1_c07760 0.31 -1.1 803,551 - PGA1_c07760 0.31 -0.3 803,563 + PGA1_c07760 0.32 -1.4 803,587 + PGA1_c07760 0.34 -0.5 803,587 + PGA1_c07760 0.34 -0.8 803,595 - PGA1_c07760 0.34 -0.9 803,603 - PGA1_c07760 0.35 +0.4 803,656 + PGA1_c07760 0.39 +0.1 803,672 - PGA1_c07760 0.40 -0.1 803,683 - PGA1_c07760 0.41 +0.1 803,710 + PGA1_c07760 0.43 -0.5 803,713 - PGA1_c07760 0.43 +0.7 803,755 + PGA1_c07760 0.46 -0.5 803,788 + PGA1_c07760 0.49 -1.3 803,815 + PGA1_c07760 0.51 -0.9 803,815 + PGA1_c07760 0.51 -0.5 803,815 + PGA1_c07760 0.51 -1.3 803,823 - PGA1_c07760 0.51 +0.8 803,841 + PGA1_c07760 0.53 -2.1 803,903 + PGA1_c07760 0.57 +0.1 803,906 - PGA1_c07760 0.58 -0.5 803,947 - PGA1_c07760 0.61 +1.1 804,023 + PGA1_c07760 0.66 +0.3 804,126 + PGA1_c07760 0.74 -0.9 804,139 - PGA1_c07760 0.75 -1.2 804,139 - PGA1_c07760 0.75 +2.6 804,173 + PGA1_c07760 0.78 +0.5 804,181 - PGA1_c07760 0.78 +0.6 804,260 + PGA1_c07760 0.84 +0.9 804,265 + PGA1_c07760 0.85 -2.1 804,267 - PGA1_c07760 0.85 +0.1 804,282 - PGA1_c07760 0.86 +0.5 804,345 - -0.5 804,436 + -0.5 804,442 + +0.7 804,531 - +1.1 804,552 + PGA1_c07770 0.14 -2.3 804,621 - PGA1_c07770 0.27 +0.1 804,659 + PGA1_c07770 0.35 +0.6 804,659 + PGA1_c07770 0.35 +0.1 804,667 - PGA1_c07770 0.36 -1.3 804,667 - PGA1_c07770 0.36 +2.1 804,667 - PGA1_c07770 0.36 +1.8 804,667 - PGA1_c07770 0.36 -0.5 804,711 - PGA1_c07770 0.45 +1.1 804,729 + PGA1_c07770 0.48 +0.5 804,737 - PGA1_c07770 0.50 +1.1 804,754 + PGA1_c07770 0.53 +1.2 804,754 + PGA1_c07770 0.53 -1.4 804,754 + PGA1_c07770 0.53 +0.8 804,754 + PGA1_c07770 0.53 +2.1 804,754 + PGA1_c07770 0.53 -1.1 804,754 + PGA1_c07770 0.53 +1.1 804,762 - PGA1_c07770 0.55 +1.1 804,762 - PGA1_c07770 0.55 -0.2 804,762 - PGA1_c07770 0.55 +0.1 804,762 - PGA1_c07770 0.55 +1.6 804,762 - PGA1_c07770 0.55 +2.4 804,762 - PGA1_c07770 0.55 +0.2 804,762 - PGA1_c07770 0.55 +1.6 804,762 - PGA1_c07770 0.55 +1.1 804,762 - PGA1_c07770 0.55 -0.5 804,762 - PGA1_c07770 0.55 -0.5 804,762 - PGA1_c07770 0.55 +2.1 804,762 - PGA1_c07770 0.55 +0.6 804,762 - PGA1_c07770 0.55 +0.3 804,767 - PGA1_c07770 0.56 +0.5 804,824 - PGA1_c07770 0.67 +0.5 804,859 + PGA1_c07770 0.73 +1.4 804,859 + PGA1_c07770 0.73 +1.3 804,881 + PGA1_c07770 0.78 +0.1 804,918 + PGA1_c07770 0.85 -0.5 804,941 + PGA1_c07770 0.89 -0.3 804,941 + PGA1_c07770 0.89 +1.1 804,950 - +0.3 805,007 + +0.5 805,031 + -0.3 805,039 - +1.1 805,070 - -0.9 805,108 + -1.1 805,137 - -0.9 805,137 - +1.1 805,145 + -0.1 805,196 + -1.2 805,196 + +0.5 805,204 - -1.7 805,237 - PGA1_c07780 0.11 -0.4 805,283 + PGA1_c07780 0.15 -0.5 805,286 - PGA1_c07780 0.15 +0.5 805,289 + PGA1_c07780 0.16 +1.1 805,289 + PGA1_c07780 0.16 +1.1 805,297 - PGA1_c07780 0.16 +1.6 805,315 + PGA1_c07780 0.18 -0.9 805,342 + PGA1_c07780 0.20 +0.1 805,381 + PGA1_c07780 0.24 -1.3 805,381 + PGA1_c07780 0.24 +0.5 805,381 + PGA1_c07780 0.24 +2.1 805,381 + PGA1_c07780 0.24 -0.9 805,389 - PGA1_c07780 0.24 +0.7 805,389 - PGA1_c07780 0.24 -0.1 805,389 - PGA1_c07780 0.24 -0.5 805,392 - PGA1_c07780 0.25 +1.5 805,403 + PGA1_c07780 0.25 -1.9 805,403 + PGA1_c07780 0.25 +2.1 805,403 + PGA1_c07780 0.25 -0.8 805,435 - PGA1_c07780 0.28 -0.4 805,435 - PGA1_c07780 0.28 -0.7 805,449 - PGA1_c07780 0.29 -1.5 805,455 + PGA1_c07780 0.30 -0.7 805,455 + PGA1_c07780 0.30 -0.5 805,456 + PGA1_c07780 0.30 +0.8 805,464 - PGA1_c07780 0.31 -1.5
Or see this region's nucleotide sequence