Experiment: m.b. Choline Lysine 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07670 and PGA1_c07680 are separated by 168 nucleotides PGA1_c07680 and PGA1_c07690 are separated by 54 nucleotides PGA1_c07690 and PGA1_c07700 overlap by 1 nucleotides PGA1_c07700 and PGA1_c07710 overlap by 4 nucleotides
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
PGA1_c07680: PGA1_c07680 - N-acyl-L-homoserine lactone synthetase, at 796,802 to 797,410
_c07680
PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556
_c07690
PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110
_c07700
PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613
_c07710
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 796.473 kb on - strand at 796.478 kb on + strand at 796.484 kb on + strand at 796.503 kb on - strand at 796.534 kb on + strand at 796.555 kb on + strand at 796.555 kb on + strand at 796.555 kb on + strand at 796.563 kb on - strand at 796.563 kb on - strand at 796.605 kb on + strand at 796.613 kb on - strand at 796.647 kb on + strand at 796.655 kb on - strand at 796.665 kb on - strand at 796.776 kb on + strand at 796.776 kb on + strand at 796.784 kb on - strand at 796.789 kb on + strand at 796.792 kb on - strand at 796.794 kb on + strand at 796.794 kb on + strand at 796.797 kb on - strand at 796.802 kb on - strand at 796.802 kb on - strand at 796.802 kb on - strand at 796.830 kb on + strand at 796.838 kb on - strand at 796.840 kb on + strand at 796.840 kb on + strand at 796.842 kb on + strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.857 kb on - strand at 796.857 kb on - strand at 796.861 kb on + strand at 796.867 kb on - strand, within PGA1_c07680 at 796.884 kb on + strand, within PGA1_c07680 at 796.884 kb on - strand, within PGA1_c07680 at 796.910 kb on - strand, within PGA1_c07680 at 796.911 kb on + strand, within PGA1_c07680 at 796.911 kb on + strand, within PGA1_c07680 at 796.940 kb on - strand, within PGA1_c07680 at 796.950 kb on - strand, within PGA1_c07680 at 796.963 kb on + strand, within PGA1_c07680 at 796.971 kb on - strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.071 kb on - strand, within PGA1_c07680 at 797.096 kb on + strand, within PGA1_c07680 at 797.096 kb on + strand, within PGA1_c07680 at 797.114 kb on + strand, within PGA1_c07680 at 797.119 kb on - strand, within PGA1_c07680 at 797.127 kb on - strand, within PGA1_c07680 at 797.154 kb on - strand, within PGA1_c07680 at 797.163 kb on + strand, within PGA1_c07680 at 797.163 kb on + strand, within PGA1_c07680 at 797.169 kb on + strand, within PGA1_c07680 at 797.169 kb on - strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.196 kb on + strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.219 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.274 kb on - strand, within PGA1_c07680 at 797.274 kb on - strand, within PGA1_c07680 at 797.292 kb on + strand, within PGA1_c07680 at 797.300 kb on - strand, within PGA1_c07680 at 797.321 kb on - strand, within PGA1_c07680 at 797.325 kb on + strand, within PGA1_c07680 at 797.333 kb on - strand, within PGA1_c07680 at 797.370 kb on - strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.413 kb on - strand at 797.413 kb on - strand at 797.413 kb on - strand at 797.464 kb on + strand at 797.469 kb on - strand at 797.469 kb on - strand at 797.498 kb on - strand at 797.512 kb on + strand at 797.512 kb on + strand at 797.512 kb on + strand at 797.529 kb on + strand at 797.529 kb on + strand at 797.529 kb on + strand at 797.534 kb on + strand at 797.537 kb on - strand at 797.539 kb on - strand at 797.550 kb on + strand at 797.566 kb on - strand at 797.581 kb on + strand, within PGA1_c07690 at 797.605 kb on - strand, within PGA1_c07690 at 797.624 kb on - strand, within PGA1_c07690 at 797.641 kb on - strand, within PGA1_c07690 at 797.738 kb on - strand, within PGA1_c07690 at 797.781 kb on + strand, within PGA1_c07690 at 797.791 kb on + strand, within PGA1_c07690 at 797.949 kb on + strand, within PGA1_c07690 at 797.951 kb on - strand, within PGA1_c07690 at 797.957 kb on - strand, within PGA1_c07690 at 797.957 kb on - strand, within PGA1_c07690 at 797.965 kb on + strand, within PGA1_c07690 at 797.965 kb on + strand, within PGA1_c07690 at 797.965 kb on + strand, within PGA1_c07690 at 797.973 kb on - strand, within PGA1_c07690 at 797.988 kb on - strand, within PGA1_c07690 at 798.037 kb on - strand, within PGA1_c07690 at 798.038 kb on + strand, within PGA1_c07690 at 798.078 kb on + strand, within PGA1_c07690 at 798.138 kb on - strand, within PGA1_c07690 at 798.148 kb on + strand, within PGA1_c07690 at 798.182 kb on + strand, within PGA1_c07690 at 798.184 kb on - strand, within PGA1_c07690 at 798.184 kb on - strand, within PGA1_c07690 at 798.190 kb on - strand, within PGA1_c07690 at 798.305 kb on + strand, within PGA1_c07690 at 798.364 kb on + strand, within PGA1_c07690 at 798.419 kb on + strand, within PGA1_c07690 at 798.419 kb on + strand, within PGA1_c07690 at 798.427 kb on - strand, within PGA1_c07690 at 798.434 kb on + strand, within PGA1_c07690 at 798.434 kb on + strand, within PGA1_c07690 at 798.440 kb on - strand, within PGA1_c07690 at 798.450 kb on - strand at 798.452 kb on - strand at 798.495 kb on - strand at 798.497 kb on - strand at 798.562 kb on + strand at 798.567 kb on - strand at 798.659 kb on - strand, within PGA1_c07700 at 798.703 kb on - strand, within PGA1_c07700 at 798.738 kb on - strand, within PGA1_c07700 at 798.782 kb on - strand, within PGA1_c07700 at 798.786 kb on - strand, within PGA1_c07700 at 798.842 kb on - strand, within PGA1_c07700 at 798.886 kb on + strand, within PGA1_c07700 at 798.891 kb on + strand, within PGA1_c07700 at 798.946 kb on + strand, within PGA1_c07700 at 798.958 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.023 kb on + strand, within PGA1_c07700 at 799.031 kb on - strand, within PGA1_c07700 at 799.064 kb on - strand at 799.066 kb on + strand at 799.151 kb on - strand at 799.159 kb on + strand, within PGA1_c07710 at 799.376 kb on + strand, within PGA1_c07710 at 799.455 kb on + strand, within PGA1_c07710 at 799.468 kb on + strand, within PGA1_c07710
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM remove 796,473 - +0.6 796,478 + -1.0 796,484 + +0.8 796,503 - +0.0 796,534 + -1.5 796,555 + +0.0 796,555 + -0.7 796,555 + -0.5 796,563 - -0.8 796,563 - -0.8 796,605 + -1.8 796,613 - -0.2 796,647 + +0.5 796,655 - -0.2 796,665 - -1.0 796,776 + -2.4 796,776 + -1.8 796,784 - +0.9 796,789 + +0.5 796,792 - +0.2 796,794 + -0.3 796,794 + -0.5 796,797 - -1.2 796,802 - -0.8 796,802 - -0.5 796,802 - +0.3 796,830 + +0.5 796,838 - -1.2 796,840 + +1.0 796,840 + +0.6 796,842 + +1.0 796,850 - +2.6 796,850 - -0.1 796,850 - -0.5 796,850 - +0.6 796,857 - -1.5 796,857 - -0.9 796,861 + -0.5 796,867 - PGA1_c07680 0.11 +0.4 796,884 + PGA1_c07680 0.13 +0.0 796,884 - PGA1_c07680 0.13 +0.5 796,910 - PGA1_c07680 0.18 -0.8 796,911 + PGA1_c07680 0.18 +0.6 796,911 + PGA1_c07680 0.18 +0.9 796,940 - PGA1_c07680 0.23 -0.8 796,950 - PGA1_c07680 0.24 -0.2 796,963 + PGA1_c07680 0.26 -2.1 796,971 - PGA1_c07680 0.28 -0.1 797,029 + PGA1_c07680 0.37 -0.2 797,029 + PGA1_c07680 0.37 +0.9 797,029 + PGA1_c07680 0.37 +1.4 797,029 + PGA1_c07680 0.37 -0.3 797,029 + PGA1_c07680 0.37 -1.4 797,029 + PGA1_c07680 0.37 -0.2 797,029 + PGA1_c07680 0.37 +3.4 797,029 + PGA1_c07680 0.37 -1.3 797,029 + PGA1_c07680 0.37 +0.5 797,029 + PGA1_c07680 0.37 +0.3 797,037 - PGA1_c07680 0.39 +2.5 797,037 - PGA1_c07680 0.39 +0.0 797,037 - PGA1_c07680 0.39 +0.0 797,037 - PGA1_c07680 0.39 +2.4 797,037 - PGA1_c07680 0.39 +0.3 797,043 + PGA1_c07680 0.40 -1.0 797,043 + PGA1_c07680 0.40 +0.8 797,043 + PGA1_c07680 0.40 +1.0 797,043 + PGA1_c07680 0.40 -0.6 797,043 + PGA1_c07680 0.40 -2.1 797,043 + PGA1_c07680 0.40 -1.3 797,043 + PGA1_c07680 0.40 +1.6 797,051 - PGA1_c07680 0.41 +0.2 797,051 - PGA1_c07680 0.41 +0.0 797,051 - PGA1_c07680 0.41 -2.5 797,071 - PGA1_c07680 0.44 -0.3 797,096 + PGA1_c07680 0.48 -0.5 797,096 + PGA1_c07680 0.48 +0.6 797,114 + PGA1_c07680 0.51 -0.1 797,119 - PGA1_c07680 0.52 +1.4 797,127 - PGA1_c07680 0.53 -1.0 797,154 - PGA1_c07680 0.58 +1.7 797,163 + PGA1_c07680 0.59 -1.8 797,163 + PGA1_c07680 0.59 +0.5 797,169 + PGA1_c07680 0.60 -0.5 797,169 - PGA1_c07680 0.60 +1.5 797,181 + PGA1_c07680 0.62 +1.5 797,181 + PGA1_c07680 0.62 +0.0 797,181 + PGA1_c07680 0.62 -1.0 797,196 + PGA1_c07680 0.65 -1.3 797,206 - PGA1_c07680 0.66 -0.5 797,206 - PGA1_c07680 0.66 -1.0 797,206 - PGA1_c07680 0.66 +0.0 797,215 + PGA1_c07680 0.68 +0.8 797,215 + PGA1_c07680 0.68 -0.5 797,215 + PGA1_c07680 0.68 +1.4 797,215 + PGA1_c07680 0.68 -0.5 797,215 + PGA1_c07680 0.68 +1.5 797,215 + PGA1_c07680 0.68 -0.5 797,215 + PGA1_c07680 0.68 -1.0 797,215 + PGA1_c07680 0.68 -0.4 797,215 + PGA1_c07680 0.68 +1.6 797,215 + PGA1_c07680 0.68 -0.7 797,219 - PGA1_c07680 0.68 +1.0 797,223 - PGA1_c07680 0.69 -1.9 797,223 - PGA1_c07680 0.69 -1.0 797,223 - PGA1_c07680 0.69 -0.3 797,274 - PGA1_c07680 0.78 -2.0 797,274 - PGA1_c07680 0.78 +1.0 797,292 + PGA1_c07680 0.80 +0.0 797,300 - PGA1_c07680 0.82 +0.0 797,321 - PGA1_c07680 0.85 -0.7 797,325 + PGA1_c07680 0.86 -0.8 797,333 - PGA1_c07680 0.87 +1.7 797,370 - +0.3 797,405 + +0.2 797,405 + +1.0 797,405 + +1.0 797,413 - +0.9 797,413 - -0.3 797,413 - +0.3 797,464 + -1.3 797,469 - -0.5 797,469 - -1.4 797,498 - -1.4 797,512 + -0.3 797,512 + +0.9 797,512 + +0.3 797,529 + -0.7 797,529 + -1.8 797,529 + -0.2 797,534 + +0.0 797,537 - +0.2 797,539 - -0.3 797,550 + +1.0 797,566 - +1.0 797,581 + PGA1_c07690 0.11 -1.0 797,605 - PGA1_c07690 0.13 -1.0 797,624 - PGA1_c07690 0.15 -0.1 797,641 - PGA1_c07690 0.16 -1.3 797,738 - PGA1_c07690 0.25 -1.0 797,781 + PGA1_c07690 0.29 +0.6 797,791 + PGA1_c07690 0.30 +0.0 797,949 + PGA1_c07690 0.44 +2.6 797,951 - PGA1_c07690 0.45 -1.5 797,957 - PGA1_c07690 0.45 +3.0 797,957 - PGA1_c07690 0.45 -0.5 797,965 + PGA1_c07690 0.46 -0.5 797,965 + PGA1_c07690 0.46 -0.7 797,965 + PGA1_c07690 0.46 +0.0 797,973 - PGA1_c07690 0.47 +0.6 797,988 - PGA1_c07690 0.48 -1.1 798,037 - PGA1_c07690 0.52 -0.9 798,038 + PGA1_c07690 0.52 +0.7 798,078 + PGA1_c07690 0.56 +0.2 798,138 - PGA1_c07690 0.62 +1.4 798,148 + PGA1_c07690 0.63 +0.0 798,182 + PGA1_c07690 0.66 +1.0 798,184 - PGA1_c07690 0.66 +0.0 798,184 - PGA1_c07690 0.66 -0.3 798,190 - PGA1_c07690 0.66 -1.5 798,305 + PGA1_c07690 0.77 -1.8 798,364 + PGA1_c07690 0.82 +0.0 798,419 + PGA1_c07690 0.87 -0.5 798,419 + PGA1_c07690 0.87 -0.8 798,427 - PGA1_c07690 0.88 -1.0 798,434 + PGA1_c07690 0.89 -0.3 798,434 + PGA1_c07690 0.89 +0.2 798,440 - PGA1_c07690 0.89 +0.0 798,450 - -1.5 798,452 - +1.0 798,495 - +0.3 798,497 - -1.6 798,562 + +1.0 798,567 - -0.5 798,659 - PGA1_c07700 0.19 +1.8 798,703 - PGA1_c07700 0.26 +0.6 798,738 - PGA1_c07700 0.33 +0.0 798,782 - PGA1_c07700 0.41 +1.8 798,786 - PGA1_c07700 0.41 -1.0 798,842 - PGA1_c07700 0.52 -1.5 798,886 + PGA1_c07700 0.59 -0.5 798,891 + PGA1_c07700 0.60 +0.6 798,946 + PGA1_c07700 0.70 -1.5 798,958 + PGA1_c07700 0.72 +0.5 799,023 + PGA1_c07700 0.84 +2.6 799,023 + PGA1_c07700 0.84 -1.8 799,023 + PGA1_c07700 0.84 +0.7 799,023 + PGA1_c07700 0.84 +0.0 799,031 - PGA1_c07700 0.86 -2.4 799,064 - -1.0 799,066 + -0.5 799,151 - +0.9 799,159 + PGA1_c07710 0.10 -0.5 799,376 + PGA1_c07710 0.53 +0.5 799,455 + PGA1_c07710 0.69 +1.0 799,468 + PGA1_c07710 0.71 -1.0
Or see this region's nucleotide sequence