Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07680

Experiment: m.b. Choline Lysine 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07670 and PGA1_c07680 are separated by 168 nucleotidesPGA1_c07680 and PGA1_c07690 are separated by 54 nucleotides PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633 _c07670 PGA1_c07680: PGA1_c07680 - N-acyl-L-homoserine lactone synthetase, at 796,802 to 797,410 _c07680 PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556 _c07690 Position (kb) 796 797 798Strain fitness (log2 ratio) -2 -1 0 1 2 3at 795.805 kb on + strand, within PGA1_c07670at 795.805 kb on + strand, within PGA1_c07670at 795.805 kb on + strand, within PGA1_c07670at 795.815 kb on + strand, within PGA1_c07670at 795.815 kb on + strand, within PGA1_c07670at 795.815 kb on + strand, within PGA1_c07670at 795.823 kb on - strand, within PGA1_c07670at 795.823 kb on - strand, within PGA1_c07670at 795.823 kb on - strand, within PGA1_c07670at 795.823 kb on - strand, within PGA1_c07670at 795.874 kb on + strand, within PGA1_c07670at 795.874 kb on + strand, within PGA1_c07670at 795.907 kb on + strand, within PGA1_c07670at 795.907 kb on + strand, within PGA1_c07670at 795.907 kb on + strand, within PGA1_c07670at 795.973 kb on - strand, within PGA1_c07670at 795.977 kb on + strand, within PGA1_c07670at 795.990 kb on + strand, within PGA1_c07670at 795.990 kb on + strand, within PGA1_c07670at 795.990 kb on + strand, within PGA1_c07670at 795.990 kb on + strand, within PGA1_c07670at 795.990 kb on + strand, within PGA1_c07670at 795.990 kb on + strand, within PGA1_c07670at 795.998 kb on - strand, within PGA1_c07670at 795.998 kb on - strand, within PGA1_c07670at 796.094 kb on - strand, within PGA1_c07670at 796.188 kb on + strand, within PGA1_c07670at 796.196 kb on - strand, within PGA1_c07670at 796.196 kb on - strand, within PGA1_c07670at 796.196 kb on - strand, within PGA1_c07670at 796.196 kb on - strand, within PGA1_c07670at 796.216 kb on + strand, within PGA1_c07670at 796.232 kb on - strand, within PGA1_c07670at 796.365 kb on + strand, within PGA1_c07670at 796.365 kb on + strand, within PGA1_c07670at 796.365 kb on + strand, within PGA1_c07670at 796.373 kb on - strand, within PGA1_c07670at 796.385 kb on + strand, within PGA1_c07670at 796.442 kb on - strand, within PGA1_c07670at 796.473 kb on - strandat 796.478 kb on + strandat 796.484 kb on + strandat 796.503 kb on - strandat 796.534 kb on + strandat 796.555 kb on + strandat 796.555 kb on + strandat 796.555 kb on + strandat 796.563 kb on - strandat 796.563 kb on - strandat 796.605 kb on + strandat 796.613 kb on - strandat 796.647 kb on + strandat 796.655 kb on - strandat 796.665 kb on - strandat 796.776 kb on + strandat 796.776 kb on + strandat 796.784 kb on - strandat 796.789 kb on + strandat 796.792 kb on - strandat 796.794 kb on + strandat 796.794 kb on + strandat 796.797 kb on - strandat 796.802 kb on - strandat 796.802 kb on - strandat 796.802 kb on - strandat 796.830 kb on + strandat 796.838 kb on - strandat 796.840 kb on + strandat 796.840 kb on + strandat 796.842 kb on + strandat 796.850 kb on - strandat 796.850 kb on - strandat 796.850 kb on - strandat 796.850 kb on - strandat 796.857 kb on - strandat 796.857 kb on - strandat 796.861 kb on + strandat 796.867 kb on - strand, within PGA1_c07680at 796.884 kb on + strand, within PGA1_c07680at 796.884 kb on - strand, within PGA1_c07680at 796.910 kb on - strand, within PGA1_c07680at 796.911 kb on + strand, within PGA1_c07680at 796.911 kb on + strand, within PGA1_c07680at 796.940 kb on - strand, within PGA1_c07680at 796.950 kb on - strand, within PGA1_c07680at 796.963 kb on + strand, within PGA1_c07680at 796.971 kb on - strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.029 kb on + strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.037 kb on - strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.043 kb on + strand, within PGA1_c07680at 797.051 kb on - strand, within PGA1_c07680at 797.051 kb on - strand, within PGA1_c07680at 797.051 kb on - strand, within PGA1_c07680at 797.071 kb on - strand, within PGA1_c07680at 797.096 kb on + strand, within PGA1_c07680at 797.096 kb on + strand, within PGA1_c07680at 797.114 kb on + strand, within PGA1_c07680at 797.119 kb on - strand, within PGA1_c07680at 797.127 kb on - strand, within PGA1_c07680at 797.154 kb on - strand, within PGA1_c07680at 797.163 kb on + strand, within PGA1_c07680at 797.163 kb on + strand, within PGA1_c07680at 797.169 kb on + strand, within PGA1_c07680at 797.169 kb on - strand, within PGA1_c07680at 797.181 kb on + strand, within PGA1_c07680at 797.181 kb on + strand, within PGA1_c07680at 797.181 kb on + strand, within PGA1_c07680at 797.196 kb on + strand, within PGA1_c07680at 797.206 kb on - strand, within PGA1_c07680at 797.206 kb on - strand, within PGA1_c07680at 797.206 kb on - strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.215 kb on + strand, within PGA1_c07680at 797.219 kb on - strand, within PGA1_c07680at 797.223 kb on - strand, within PGA1_c07680at 797.223 kb on - strand, within PGA1_c07680at 797.223 kb on - strand, within PGA1_c07680at 797.274 kb on - strand, within PGA1_c07680at 797.274 kb on - strand, within PGA1_c07680at 797.292 kb on + strand, within PGA1_c07680at 797.300 kb on - strand, within PGA1_c07680at 797.321 kb on - strand, within PGA1_c07680at 797.325 kb on + strand, within PGA1_c07680at 797.333 kb on - strand, within PGA1_c07680at 797.370 kb on - strandat 797.405 kb on + strandat 797.405 kb on + strandat 797.405 kb on + strandat 797.413 kb on - strandat 797.413 kb on - strandat 797.413 kb on - strandat 797.464 kb on + strandat 797.469 kb on - strandat 797.469 kb on - strandat 797.498 kb on - strandat 797.512 kb on + strandat 797.512 kb on + strandat 797.512 kb on + strandat 797.529 kb on + strandat 797.529 kb on + strandat 797.529 kb on + strandat 797.534 kb on + strandat 797.537 kb on - strandat 797.539 kb on - strandat 797.550 kb on + strandat 797.566 kb on - strandat 797.581 kb on + strand, within PGA1_c07690at 797.605 kb on - strand, within PGA1_c07690at 797.624 kb on - strand, within PGA1_c07690at 797.641 kb on - strand, within PGA1_c07690at 797.738 kb on - strand, within PGA1_c07690at 797.781 kb on + strand, within PGA1_c07690at 797.791 kb on + strand, within PGA1_c07690at 797.949 kb on + strand, within PGA1_c07690at 797.951 kb on - strand, within PGA1_c07690at 797.957 kb on - strand, within PGA1_c07690at 797.957 kb on - strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.973 kb on - strand, within PGA1_c07690at 797.988 kb on - strand, within PGA1_c07690at 798.037 kb on - strand, within PGA1_c07690at 798.038 kb on + strand, within PGA1_c07690at 798.078 kb on + strand, within PGA1_c07690at 798.138 kb on - strand, within PGA1_c07690at 798.148 kb on + strand, within PGA1_c07690at 798.182 kb on + strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.190 kb on - strand, within PGA1_c07690at 798.305 kb on + strand, within PGA1_c07690at 798.364 kb on + strand, within PGA1_c07690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM
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795,805 + PGA1_c07670 0.52 -0.8
795,805 + PGA1_c07670 0.52 -0.5
795,805 + PGA1_c07670 0.52 -0.7
795,815 + PGA1_c07670 0.53 -0.2
795,815 + PGA1_c07670 0.53 -0.0
795,815 + PGA1_c07670 0.53 +0.5
795,823 - PGA1_c07670 0.53 -0.2
795,823 - PGA1_c07670 0.53 +0.0
795,823 - PGA1_c07670 0.53 +0.0
795,823 - PGA1_c07670 0.53 -0.7
795,874 + PGA1_c07670 0.56 +1.0
795,874 + PGA1_c07670 0.56 -1.4
795,907 + PGA1_c07670 0.58 -1.7
795,907 + PGA1_c07670 0.58 +1.2
795,907 + PGA1_c07670 0.58 +0.6
795,973 - PGA1_c07670 0.62 -0.5
795,977 + PGA1_c07670 0.62 -1.2
795,990 + PGA1_c07670 0.63 -0.2
795,990 + PGA1_c07670 0.63 +1.5
795,990 + PGA1_c07670 0.63 +0.7
795,990 + PGA1_c07670 0.63 -0.7
795,990 + PGA1_c07670 0.63 -0.5
795,990 + PGA1_c07670 0.63 +2.6
795,998 - PGA1_c07670 0.64 -1.0
795,998 - PGA1_c07670 0.64 -0.1
796,094 - PGA1_c07670 0.69 +0.6
796,188 + PGA1_c07670 0.74 +2.2
796,196 - PGA1_c07670 0.75 -0.6
796,196 - PGA1_c07670 0.75 +0.0
796,196 - PGA1_c07670 0.75 +0.0
796,196 - PGA1_c07670 0.75 -0.7
796,216 + PGA1_c07670 0.76 -2.1
796,232 - PGA1_c07670 0.77 -2.4
796,365 + PGA1_c07670 0.85 -1.5
796,365 + PGA1_c07670 0.85 +0.9
796,365 + PGA1_c07670 0.85 +1.0
796,373 - PGA1_c07670 0.85 -1.3
796,385 + PGA1_c07670 0.86 -1.5
796,442 - PGA1_c07670 0.89 -1.4
796,473 - +0.6
796,478 + -1.0
796,484 + +0.8
796,503 - +0.0
796,534 + -1.5
796,555 + +0.0
796,555 + -0.7
796,555 + -0.5
796,563 - -0.8
796,563 - -0.8
796,605 + -1.8
796,613 - -0.2
796,647 + +0.5
796,655 - -0.2
796,665 - -1.0
796,776 + -2.4
796,776 + -1.8
796,784 - +0.9
796,789 + +0.5
796,792 - +0.2
796,794 + -0.3
796,794 + -0.5
796,797 - -1.2
796,802 - -0.8
796,802 - -0.5
796,802 - +0.3
796,830 + +0.5
796,838 - -1.2
796,840 + +1.0
796,840 + +0.6
796,842 + +1.0
796,850 - +2.6
796,850 - -0.1
796,850 - -0.5
796,850 - +0.6
796,857 - -1.5
796,857 - -0.9
796,861 + -0.5
796,867 - PGA1_c07680 0.11 +0.4
796,884 + PGA1_c07680 0.13 +0.0
796,884 - PGA1_c07680 0.13 +0.5
796,910 - PGA1_c07680 0.18 -0.8
796,911 + PGA1_c07680 0.18 +0.6
796,911 + PGA1_c07680 0.18 +0.9
796,940 - PGA1_c07680 0.23 -0.8
796,950 - PGA1_c07680 0.24 -0.2
796,963 + PGA1_c07680 0.26 -2.1
796,971 - PGA1_c07680 0.28 -0.1
797,029 + PGA1_c07680 0.37 -0.2
797,029 + PGA1_c07680 0.37 +0.9
797,029 + PGA1_c07680 0.37 +1.4
797,029 + PGA1_c07680 0.37 -0.3
797,029 + PGA1_c07680 0.37 -1.4
797,029 + PGA1_c07680 0.37 -0.2
797,029 + PGA1_c07680 0.37 +3.4
797,029 + PGA1_c07680 0.37 -1.3
797,029 + PGA1_c07680 0.37 +0.5
797,029 + PGA1_c07680 0.37 +0.3
797,037 - PGA1_c07680 0.39 +2.5
797,037 - PGA1_c07680 0.39 +0.0
797,037 - PGA1_c07680 0.39 +0.0
797,037 - PGA1_c07680 0.39 +2.4
797,037 - PGA1_c07680 0.39 +0.3
797,043 + PGA1_c07680 0.40 -1.0
797,043 + PGA1_c07680 0.40 +0.8
797,043 + PGA1_c07680 0.40 +1.0
797,043 + PGA1_c07680 0.40 -0.6
797,043 + PGA1_c07680 0.40 -2.1
797,043 + PGA1_c07680 0.40 -1.3
797,043 + PGA1_c07680 0.40 +1.6
797,051 - PGA1_c07680 0.41 +0.2
797,051 - PGA1_c07680 0.41 +0.0
797,051 - PGA1_c07680 0.41 -2.5
797,071 - PGA1_c07680 0.44 -0.3
797,096 + PGA1_c07680 0.48 -0.5
797,096 + PGA1_c07680 0.48 +0.6
797,114 + PGA1_c07680 0.51 -0.1
797,119 - PGA1_c07680 0.52 +1.4
797,127 - PGA1_c07680 0.53 -1.0
797,154 - PGA1_c07680 0.58 +1.7
797,163 + PGA1_c07680 0.59 -1.8
797,163 + PGA1_c07680 0.59 +0.5
797,169 + PGA1_c07680 0.60 -0.5
797,169 - PGA1_c07680 0.60 +1.5
797,181 + PGA1_c07680 0.62 +1.5
797,181 + PGA1_c07680 0.62 +0.0
797,181 + PGA1_c07680 0.62 -1.0
797,196 + PGA1_c07680 0.65 -1.3
797,206 - PGA1_c07680 0.66 -0.5
797,206 - PGA1_c07680 0.66 -1.0
797,206 - PGA1_c07680 0.66 +0.0
797,215 + PGA1_c07680 0.68 +0.8
797,215 + PGA1_c07680 0.68 -0.5
797,215 + PGA1_c07680 0.68 +1.4
797,215 + PGA1_c07680 0.68 -0.5
797,215 + PGA1_c07680 0.68 +1.5
797,215 + PGA1_c07680 0.68 -0.5
797,215 + PGA1_c07680 0.68 -1.0
797,215 + PGA1_c07680 0.68 -0.4
797,215 + PGA1_c07680 0.68 +1.6
797,215 + PGA1_c07680 0.68 -0.7
797,219 - PGA1_c07680 0.68 +1.0
797,223 - PGA1_c07680 0.69 -1.9
797,223 - PGA1_c07680 0.69 -1.0
797,223 - PGA1_c07680 0.69 -0.3
797,274 - PGA1_c07680 0.78 -2.0
797,274 - PGA1_c07680 0.78 +1.0
797,292 + PGA1_c07680 0.80 +0.0
797,300 - PGA1_c07680 0.82 +0.0
797,321 - PGA1_c07680 0.85 -0.7
797,325 + PGA1_c07680 0.86 -0.8
797,333 - PGA1_c07680 0.87 +1.7
797,370 - +0.3
797,405 + +0.2
797,405 + +1.0
797,405 + +1.0
797,413 - +0.9
797,413 - -0.3
797,413 - +0.3
797,464 + -1.3
797,469 - -0.5
797,469 - -1.4
797,498 - -1.4
797,512 + -0.3
797,512 + +0.9
797,512 + +0.3
797,529 + -0.7
797,529 + -1.8
797,529 + -0.2
797,534 + +0.0
797,537 - +0.2
797,539 - -0.3
797,550 + +1.0
797,566 - +1.0
797,581 + PGA1_c07690 0.11 -1.0
797,605 - PGA1_c07690 0.13 -1.0
797,624 - PGA1_c07690 0.15 -0.1
797,641 - PGA1_c07690 0.16 -1.3
797,738 - PGA1_c07690 0.25 -1.0
797,781 + PGA1_c07690 0.29 +0.6
797,791 + PGA1_c07690 0.30 +0.0
797,949 + PGA1_c07690 0.44 +2.6
797,951 - PGA1_c07690 0.45 -1.5
797,957 - PGA1_c07690 0.45 +3.0
797,957 - PGA1_c07690 0.45 -0.5
797,965 + PGA1_c07690 0.46 -0.5
797,965 + PGA1_c07690 0.46 -0.7
797,965 + PGA1_c07690 0.46 +0.0
797,973 - PGA1_c07690 0.47 +0.6
797,988 - PGA1_c07690 0.48 -1.1
798,037 - PGA1_c07690 0.52 -0.9
798,038 + PGA1_c07690 0.52 +0.7
798,078 + PGA1_c07690 0.56 +0.2
798,138 - PGA1_c07690 0.62 +1.4
798,148 + PGA1_c07690 0.63 +0.0
798,182 + PGA1_c07690 0.66 +1.0
798,184 - PGA1_c07690 0.66 +0.0
798,184 - PGA1_c07690 0.66 -0.3
798,190 - PGA1_c07690 0.66 -1.5
798,305 + PGA1_c07690 0.77 -1.8
798,364 + PGA1_c07690 0.82 +0.0

Or see this region's nucleotide sequence