Experiment: m.b. Choline Lysine 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06090 and PGA1_c06100 are separated by 10 nucleotides PGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides PGA1_c06110 and PGA1_c06120 are separated by 29 nucleotides
PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847
_c06090
PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826
_c06100
PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271
_c06110
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
Position (kb) 624
625
626
627 Strain fitness (log2 ratio) -1
0
1
2
3 at 623.904 kb on - strand at 623.940 kb on + strand at 624.031 kb on + strand, within PGA1_c06100 at 624.054 kb on + strand, within PGA1_c06100 at 624.079 kb on + strand, within PGA1_c06100 at 624.099 kb on + strand, within PGA1_c06100 at 624.121 kb on + strand, within PGA1_c06100 at 624.160 kb on + strand, within PGA1_c06100 at 624.168 kb on + strand, within PGA1_c06100 at 624.285 kb on + strand, within PGA1_c06100 at 624.425 kb on + strand, within PGA1_c06100 at 624.478 kb on + strand, within PGA1_c06100 at 624.569 kb on + strand, within PGA1_c06100 at 624.617 kb on - strand, within PGA1_c06100 at 624.727 kb on - strand, within PGA1_c06100 at 624.751 kb on + strand at 624.767 kb on - strand at 624.786 kb on - strand at 624.808 kb on + strand at 624.821 kb on - strand at 624.879 kb on - strand at 625.064 kb on + strand, within PGA1_c06110 at 625.184 kb on + strand, within PGA1_c06110 at 625.283 kb on - strand, within PGA1_c06110 at 625.482 kb on - strand, within PGA1_c06110 at 625.511 kb on - strand, within PGA1_c06110 at 625.559 kb on - strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.586 kb on + strand, within PGA1_c06110 at 625.597 kb on - strand, within PGA1_c06110 at 625.783 kb on + strand, within PGA1_c06110 at 625.795 kb on + strand, within PGA1_c06110 at 625.830 kb on + strand, within PGA1_c06110 at 625.851 kb on - strand, within PGA1_c06110 at 625.878 kb on + strand, within PGA1_c06110 at 625.937 kb on - strand, within PGA1_c06110 at 625.941 kb on + strand, within PGA1_c06110 at 626.016 kb on - strand, within PGA1_c06110 at 626.157 kb on - strand at 626.157 kb on - strand at 626.259 kb on + strand at 626.327 kb on - strand at 626.341 kb on + strand at 626.418 kb on + strand at 626.419 kb on - strand at 626.499 kb on + strand, within PGA1_c06120 at 626.499 kb on + strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.507 kb on - strand, within PGA1_c06120 at 626.535 kb on + strand, within PGA1_c06120 at 626.538 kb on - strand, within PGA1_c06120 at 626.538 kb on - strand, within PGA1_c06120 at 626.570 kb on - strand, within PGA1_c06120 at 626.595 kb on - strand, within PGA1_c06120 at 626.687 kb on - strand, within PGA1_c06120 at 626.687 kb on - strand, within PGA1_c06120 at 626.725 kb on + strand, within PGA1_c06120 at 626.742 kb on - strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.819 kb on + strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.969 kb on - strand, within PGA1_c06120 at 627.050 kb on - strand, within PGA1_c06120 at 627.115 kb on - strand, within PGA1_c06120 at 627.117 kb on + strand, within PGA1_c06120 at 627.178 kb on + strand, within PGA1_c06120 at 627.216 kb on + strand, within PGA1_c06120 at 627.234 kb on + strand, within PGA1_c06120 at 627.239 kb on + strand, within PGA1_c06120 at 627.242 kb on - strand, within PGA1_c06120
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM remove 623,904 - -0.4 623,940 + +1.7 624,031 + PGA1_c06100 0.18 +0.2 624,054 + PGA1_c06100 0.20 +1.7 624,079 + PGA1_c06100 0.23 +1.9 624,099 + PGA1_c06100 0.25 -0.4 624,121 + PGA1_c06100 0.27 +1.2 624,160 + PGA1_c06100 0.31 +0.2 624,168 + PGA1_c06100 0.32 -0.8 624,285 + PGA1_c06100 0.44 +0.2 624,425 + PGA1_c06100 0.59 +0.2 624,478 + PGA1_c06100 0.64 +0.2 624,569 + PGA1_c06100 0.73 -1.6 624,617 - PGA1_c06100 0.78 +1.5 624,727 - PGA1_c06100 0.90 -0.4 624,751 + +2.4 624,767 - -0.4 624,786 - -0.6 624,808 + +2.2 624,821 - +3.2 624,879 - +0.2 625,064 + PGA1_c06110 0.16 +2.2 625,184 + PGA1_c06110 0.25 +0.2 625,283 - PGA1_c06110 0.32 -0.4 625,482 - PGA1_c06110 0.45 +0.2 625,511 - PGA1_c06110 0.47 -0.4 625,559 - PGA1_c06110 0.51 +0.2 625,576 + PGA1_c06110 0.52 +0.2 625,576 + PGA1_c06110 0.52 -0.4 625,586 + PGA1_c06110 0.53 +0.2 625,597 - PGA1_c06110 0.53 +2.2 625,783 + PGA1_c06110 0.66 +1.2 625,795 + PGA1_c06110 0.67 +1.2 625,830 + PGA1_c06110 0.69 +1.2 625,851 - PGA1_c06110 0.71 +1.2 625,878 + PGA1_c06110 0.73 +1.2 625,937 - PGA1_c06110 0.77 +0.2 625,941 + PGA1_c06110 0.77 +1.2 626,016 - PGA1_c06110 0.82 -0.4 626,157 - -0.4 626,157 - +0.2 626,259 + +2.2 626,327 - +1.2 626,341 + +2.2 626,418 + +1.2 626,419 - +2.2 626,499 + PGA1_c06120 0.16 +0.6 626,499 + PGA1_c06120 0.16 +0.4 626,507 - PGA1_c06120 0.17 +2.2 626,507 - PGA1_c06120 0.17 +1.2 626,507 - PGA1_c06120 0.17 +2.2 626,535 + PGA1_c06120 0.19 +1.2 626,538 - PGA1_c06120 0.19 -0.4 626,538 - PGA1_c06120 0.19 +1.2 626,570 - PGA1_c06120 0.22 +1.2 626,595 - PGA1_c06120 0.24 +2.2 626,687 - PGA1_c06120 0.31 -0.2 626,687 - PGA1_c06120 0.31 +1.2 626,725 + PGA1_c06120 0.34 +1.2 626,742 - PGA1_c06120 0.36 -0.4 626,800 + PGA1_c06120 0.40 +2.2 626,800 + PGA1_c06120 0.40 +1.2 626,819 + PGA1_c06120 0.42 +1.7 626,917 - PGA1_c06120 0.50 +2.7 626,917 - PGA1_c06120 0.50 -0.8 626,919 + PGA1_c06120 0.50 -1.6 626,919 + PGA1_c06120 0.50 +1.2 626,969 - PGA1_c06120 0.54 +0.2 627,050 - PGA1_c06120 0.61 -1.4 627,115 - PGA1_c06120 0.66 +1.2 627,117 + PGA1_c06120 0.66 +0.6 627,178 + PGA1_c06120 0.71 -1.6 627,216 + PGA1_c06120 0.74 -0.2 627,234 + PGA1_c06120 0.76 +0.4 627,239 + PGA1_c06120 0.76 +0.7 627,242 - PGA1_c06120 0.76 +0.2
Or see this region's nucleotide sequence