Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02150

Experiment: m.b. Choline Lysine 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotidesPGA1_262p02140 and PGA1_262p02150 are separated by 273 nucleotidesPGA1_262p02150 and PGA1_262p02160 are separated by 94 nucleotides PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741 _262p02130 PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142 _262p02140 PGA1_262p02150: PGA1_262p02150 - methyl-accepting chemotaxis protein I, at 231,416 to 233,815 _262p02150 PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914 _262p02160 Position (kb) 231 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2 3at 230.477 kb on - strand, within PGA1_262p02130at 230.533 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.552 kb on + strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.560 kb on - strand, within PGA1_262p02130at 230.597 kb on - strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.622 kb on + strand, within PGA1_262p02130at 230.630 kb on - strand, within PGA1_262p02130at 230.640 kb on + strand, within PGA1_262p02130at 230.645 kb on - strand, within PGA1_262p02130at 230.655 kb on - strand, within PGA1_262p02130at 230.672 kb on + strand, within PGA1_262p02130at 230.865 kb on - strand, within PGA1_262p02140at 230.875 kb on + strand, within PGA1_262p02140at 230.883 kb on - strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.928 kb on + strand, within PGA1_262p02140at 230.936 kb on - strand, within PGA1_262p02140at 230.952 kb on + strand, within PGA1_262p02140at 230.979 kb on - strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.982 kb on + strand, within PGA1_262p02140at 230.989 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.990 kb on - strand, within PGA1_262p02140at 230.992 kb on + strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.000 kb on - strand, within PGA1_262p02140at 231.067 kb on - strand, within PGA1_262p02140at 231.075 kb on + strand, within PGA1_262p02140at 231.213 kb on + strandat 231.245 kb on - strandat 231.250 kb on + strandat 231.252 kb on + strandat 231.272 kb on + strandat 231.279 kb on - strandat 231.282 kb on - strandat 231.371 kb on - strandat 231.371 kb on - strandat 231.381 kb on + strandat 231.389 kb on - strandat 231.402 kb on + strandat 231.402 kb on + strandat 231.455 kb on + strandat 231.458 kb on - strandat 231.478 kb on - strandat 231.505 kb on + strandat 231.518 kb on - strandat 231.570 kb on - strandat 231.585 kb on - strandat 231.632 kb on - strandat 231.632 kb on - strandat 231.638 kb on - strandat 231.643 kb on + strandat 231.669 kb on + strand, within PGA1_262p02150at 231.681 kb on + strand, within PGA1_262p02150at 231.691 kb on + strand, within PGA1_262p02150at 231.699 kb on - strand, within PGA1_262p02150at 231.699 kb on - strand, within PGA1_262p02150at 231.724 kb on + strand, within PGA1_262p02150at 231.734 kb on - strand, within PGA1_262p02150at 231.800 kb on + strand, within PGA1_262p02150at 231.808 kb on - strand, within PGA1_262p02150at 231.817 kb on + strand, within PGA1_262p02150at 231.825 kb on - strand, within PGA1_262p02150at 231.842 kb on + strand, within PGA1_262p02150at 231.850 kb on - strand, within PGA1_262p02150at 231.882 kb on - strand, within PGA1_262p02150at 231.898 kb on - strand, within PGA1_262p02150at 231.927 kb on + strand, within PGA1_262p02150at 231.935 kb on - strand, within PGA1_262p02150at 231.935 kb on - strand, within PGA1_262p02150at 231.937 kb on + strand, within PGA1_262p02150at 231.982 kb on - strand, within PGA1_262p02150at 232.181 kb on + strand, within PGA1_262p02150at 232.241 kb on - strand, within PGA1_262p02150at 232.333 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.403 kb on + strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.411 kb on - strand, within PGA1_262p02150at 232.413 kb on + strand, within PGA1_262p02150at 232.639 kb on + strand, within PGA1_262p02150at 232.639 kb on - strand, within PGA1_262p02150at 232.682 kb on - strand, within PGA1_262p02150at 232.682 kb on - strand, within PGA1_262p02150at 232.729 kb on + strand, within PGA1_262p02150at 232.729 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.734 kb on + strand, within PGA1_262p02150at 232.737 kb on - strand, within PGA1_262p02150at 232.739 kb on + strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.742 kb on - strand, within PGA1_262p02150at 232.851 kb on - strand, within PGA1_262p02150at 233.928 kb on - strandat 233.967 kb on - strandat 234.061 kb on - strand, within PGA1_262p02160at 234.065 kb on - strand, within PGA1_262p02160at 234.072 kb on + strand, within PGA1_262p02160at 234.126 kb on + strand, within PGA1_262p02160at 234.151 kb on - strand, within PGA1_262p02160at 234.339 kb on + strand, within PGA1_262p02160at 234.401 kb on - strand, within PGA1_262p02160at 234.418 kb on - strand, within PGA1_262p02160at 234.428 kb on - strand, within PGA1_262p02160at 234.515 kb on + strand, within PGA1_262p02160at 234.523 kb on - strand, within PGA1_262p02160at 234.590 kb on + strand, within PGA1_262p02160at 234.590 kb on + strand, within PGA1_262p02160at 234.599 kb on - strand, within PGA1_262p02160at 234.609 kb on - strand, within PGA1_262p02160at 234.623 kb on + strand, within PGA1_262p02160at 234.623 kb on + strand, within PGA1_262p02160at 234.631 kb on - strand, within PGA1_262p02160at 234.684 kb on + strand, within PGA1_262p02160at 234.684 kb on + strand, within PGA1_262p02160at 234.692 kb on - strand, within PGA1_262p02160at 234.692 kb on - strand, within PGA1_262p02160at 234.732 kb on + strand, within PGA1_262p02160at 234.735 kb on - strand, within PGA1_262p02160at 234.740 kb on - strand, within PGA1_262p02160at 234.752 kb on - strand, within PGA1_262p02160at 234.785 kb on - strand, within PGA1_262p02160at 234.785 kb on - strand, within PGA1_262p02160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM
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230,477 - PGA1_262p02130 0.29 -1.5
230,533 + PGA1_262p02130 0.44 -0.9
230,552 + PGA1_262p02130 0.49 -0.2
230,552 + PGA1_262p02130 0.49 +1.2
230,560 - PGA1_262p02130 0.51 +0.1
230,560 - PGA1_262p02130 0.51 -0.4
230,560 - PGA1_262p02130 0.51 +0.0
230,560 - PGA1_262p02130 0.51 -0.2
230,560 - PGA1_262p02130 0.51 -0.7
230,597 - PGA1_262p02130 0.61 -0.6
230,622 + PGA1_262p02130 0.68 +2.1
230,622 + PGA1_262p02130 0.68 -1.2
230,630 - PGA1_262p02130 0.70 +1.0
230,640 + PGA1_262p02130 0.73 -1.1
230,645 - PGA1_262p02130 0.74 -0.4
230,655 - PGA1_262p02130 0.77 -0.3
230,672 + PGA1_262p02130 0.81 -0.1
230,865 - PGA1_262p02140 0.31 +0.4
230,875 + PGA1_262p02140 0.34 +0.3
230,883 - PGA1_262p02140 0.36 +1.0
230,928 + PGA1_262p02140 0.47 -0.4
230,928 + PGA1_262p02140 0.47 +0.2
230,928 + PGA1_262p02140 0.47 +0.2
230,936 - PGA1_262p02140 0.49 +1.0
230,952 + PGA1_262p02140 0.53 +0.2
230,979 - PGA1_262p02140 0.60 +1.2
230,982 + PGA1_262p02140 0.60 +3.0
230,982 + PGA1_262p02140 0.60 -0.4
230,982 + PGA1_262p02140 0.60 +0.5
230,982 + PGA1_262p02140 0.60 +1.4
230,989 - PGA1_262p02140 0.62 +1.0
230,990 - PGA1_262p02140 0.62 +1.7
230,990 - PGA1_262p02140 0.62 +0.4
230,990 - PGA1_262p02140 0.62 +0.6
230,990 - PGA1_262p02140 0.62 +0.4
230,990 - PGA1_262p02140 0.62 -1.7
230,990 - PGA1_262p02140 0.62 -0.1
230,990 - PGA1_262p02140 0.62 +0.8
230,992 + PGA1_262p02140 0.63 -0.7
231,000 - PGA1_262p02140 0.65 +0.1
231,000 - PGA1_262p02140 0.65 +0.8
231,000 - PGA1_262p02140 0.65 -0.2
231,000 - PGA1_262p02140 0.65 -0.2
231,000 - PGA1_262p02140 0.65 +0.6
231,000 - PGA1_262p02140 0.65 -0.5
231,000 - PGA1_262p02140 0.65 -1.5
231,000 - PGA1_262p02140 0.65 -1.5
231,067 - PGA1_262p02140 0.81 -1.1
231,075 + PGA1_262p02140 0.83 +0.5
231,213 + +0.3
231,245 - +0.5
231,250 + +0.0
231,252 + +0.8
231,272 + -0.2
231,279 - -0.5
231,282 - +0.3
231,371 - -0.0
231,371 - -0.2
231,381 + +1.0
231,389 - +0.2
231,402 + +1.2
231,402 + -0.5
231,455 + +0.6
231,458 - +0.2
231,478 - +0.2
231,505 + -0.1
231,518 - -0.6
231,570 - -0.1
231,585 - +0.5
231,632 - +1.2
231,632 - +0.5
231,638 - -0.2
231,643 + +0.2
231,669 + PGA1_262p02150 0.11 +3.2
231,681 + PGA1_262p02150 0.11 +1.5
231,691 + PGA1_262p02150 0.11 +2.2
231,699 - PGA1_262p02150 0.12 +0.6
231,699 - PGA1_262p02150 0.12 -1.2
231,724 + PGA1_262p02150 0.13 +0.6
231,734 - PGA1_262p02150 0.13 +1.9
231,800 + PGA1_262p02150 0.16 +0.3
231,808 - PGA1_262p02150 0.16 -0.5
231,817 + PGA1_262p02150 0.17 -0.8
231,825 - PGA1_262p02150 0.17 +1.0
231,842 + PGA1_262p02150 0.18 +1.6
231,850 - PGA1_262p02150 0.18 +0.6
231,882 - PGA1_262p02150 0.19 -0.0
231,898 - PGA1_262p02150 0.20 -0.1
231,927 + PGA1_262p02150 0.21 -0.8
231,935 - PGA1_262p02150 0.22 +0.5
231,935 - PGA1_262p02150 0.22 +0.6
231,937 + PGA1_262p02150 0.22 -0.5
231,982 - PGA1_262p02150 0.24 -0.9
232,181 + PGA1_262p02150 0.32 -0.0
232,241 - PGA1_262p02150 0.34 -0.4
232,333 + PGA1_262p02150 0.38 +0.2
232,403 + PGA1_262p02150 0.41 +0.4
232,403 + PGA1_262p02150 0.41 -0.2
232,403 + PGA1_262p02150 0.41 +0.8
232,403 + PGA1_262p02150 0.41 +0.5
232,403 + PGA1_262p02150 0.41 +1.6
232,403 + PGA1_262p02150 0.41 +0.6
232,403 + PGA1_262p02150 0.41 +1.6
232,403 + PGA1_262p02150 0.41 -0.3
232,403 + PGA1_262p02150 0.41 -1.2
232,403 + PGA1_262p02150 0.41 +1.2
232,403 + PGA1_262p02150 0.41 -0.2
232,411 - PGA1_262p02150 0.41 +0.6
232,411 - PGA1_262p02150 0.41 -0.2
232,411 - PGA1_262p02150 0.41 -0.2
232,411 - PGA1_262p02150 0.41 +0.7
232,411 - PGA1_262p02150 0.41 +0.4
232,411 - PGA1_262p02150 0.41 +1.1
232,411 - PGA1_262p02150 0.41 +1.2
232,411 - PGA1_262p02150 0.41 +0.7
232,411 - PGA1_262p02150 0.41 -1.3
232,411 - PGA1_262p02150 0.41 +0.3
232,411 - PGA1_262p02150 0.41 -0.7
232,413 + PGA1_262p02150 0.42 +3.2
232,639 + PGA1_262p02150 0.51 -0.4
232,639 - PGA1_262p02150 0.51 -1.6
232,682 - PGA1_262p02150 0.53 -0.8
232,682 - PGA1_262p02150 0.53 -0.4
232,729 + PGA1_262p02150 0.55 +0.3
232,729 + PGA1_262p02150 0.55 +1.6
232,734 + PGA1_262p02150 0.55 +2.2
232,734 + PGA1_262p02150 0.55 +0.6
232,734 + PGA1_262p02150 0.55 +1.2
232,734 + PGA1_262p02150 0.55 +0.4
232,737 - PGA1_262p02150 0.55 +0.1
232,739 + PGA1_262p02150 0.55 +0.1
232,742 - PGA1_262p02150 0.55 +0.6
232,742 - PGA1_262p02150 0.55 -0.6
232,742 - PGA1_262p02150 0.55 +1.4
232,742 - PGA1_262p02150 0.55 -1.4
232,851 - PGA1_262p02150 0.60 +0.7
233,928 - +0.5
233,967 - +0.5
234,061 - PGA1_262p02160 0.15 +0.7
234,065 - PGA1_262p02160 0.15 -0.1
234,072 + PGA1_262p02160 0.16 +1.5
234,126 + PGA1_262p02160 0.21 +0.2
234,151 - PGA1_262p02160 0.24 -0.3
234,339 + PGA1_262p02160 0.43 -0.1
234,401 - PGA1_262p02160 0.49 +0.8
234,418 - PGA1_262p02160 0.51 -0.4
234,428 - PGA1_262p02160 0.52 -0.1
234,515 + PGA1_262p02160 0.60 +1.0
234,523 - PGA1_262p02160 0.61 +0.5
234,590 + PGA1_262p02160 0.68 -2.6
234,590 + PGA1_262p02160 0.68 +1.6
234,599 - PGA1_262p02160 0.69 +0.6
234,609 - PGA1_262p02160 0.70 -0.5
234,623 + PGA1_262p02160 0.71 +0.2
234,623 + PGA1_262p02160 0.71 -1.0
234,631 - PGA1_262p02160 0.72 +0.4
234,684 + PGA1_262p02160 0.77 -0.1
234,684 + PGA1_262p02160 0.77 +0.6
234,692 - PGA1_262p02160 0.78 +1.2
234,692 - PGA1_262p02160 0.78 +1.4
234,732 + PGA1_262p02160 0.82 +0.9
234,735 - PGA1_262p02160 0.82 +1.7
234,740 - PGA1_262p02160 0.83 +1.2
234,752 - PGA1_262p02160 0.84 +0.4
234,785 - PGA1_262p02160 0.87 +0.8
234,785 - PGA1_262p02160 0.87 +1.4

Or see this region's nucleotide sequence