Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03890

Experiment: m.b. Choline Lysine 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03880 and PGA1_c03890 are separated by 94 nucleotidesPGA1_c03890 and PGA1_c03900 are separated by 108 nucleotides PGA1_c03880: PGA1_c03880 - putative transcriptional activator protein RaiR, at 374,695 to 375,414 _c03880 PGA1_c03890: PGA1_c03890 - putative acyl-homoserine-lactone synthase RaiI, at 375,509 to 376,150 _c03890 PGA1_c03900: PGA1_c03900 - hypothetical protein, at 376,259 to 377,797 _c03900 Position (kb) 375 376 377Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 374.514 kb on + strandat 374.531 kb on + strandat 374.531 kb on + strandat 374.539 kb on - strandat 374.539 kb on - strandat 374.539 kb on - strandat 374.585 kb on - strandat 374.595 kb on - strandat 374.595 kb on - strandat 374.609 kb on + strandat 374.617 kb on - strandat 374.643 kb on + strandat 374.664 kb on + strandat 374.691 kb on + strandat 374.719 kb on - strandat 374.731 kb on - strandat 374.746 kb on + strandat 374.747 kb on + strandat 374.752 kb on + strandat 374.759 kb on + strandat 374.759 kb on + strandat 374.759 kb on + strandat 374.789 kb on - strand, within PGA1_c03880at 374.825 kb on - strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.868 kb on + strand, within PGA1_c03880at 374.870 kb on + strand, within PGA1_c03880at 374.870 kb on + strand, within PGA1_c03880at 374.870 kb on + strand, within PGA1_c03880at 374.873 kb on + strand, within PGA1_c03880at 374.873 kb on + strand, within PGA1_c03880at 374.873 kb on + strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.876 kb on - strand, within PGA1_c03880at 374.878 kb on - strand, within PGA1_c03880at 374.881 kb on - strand, within PGA1_c03880at 374.881 kb on - strand, within PGA1_c03880at 374.881 kb on - strand, within PGA1_c03880at 374.883 kb on - strand, within PGA1_c03880at 374.896 kb on + strand, within PGA1_c03880at 374.984 kb on - strand, within PGA1_c03880at 374.984 kb on - strand, within PGA1_c03880at 375.038 kb on + strand, within PGA1_c03880at 375.041 kb on - strand, within PGA1_c03880at 375.041 kb on - strand, within PGA1_c03880at 375.046 kb on - strand, within PGA1_c03880at 375.046 kb on - strand, within PGA1_c03880at 375.071 kb on - strand, within PGA1_c03880at 375.078 kb on + strand, within PGA1_c03880at 375.078 kb on + strand, within PGA1_c03880at 375.078 kb on + strand, within PGA1_c03880at 375.078 kb on + strand, within PGA1_c03880at 375.078 kb on + strand, within PGA1_c03880at 375.085 kb on + strand, within PGA1_c03880at 375.086 kb on - strand, within PGA1_c03880at 375.086 kb on - strand, within PGA1_c03880at 375.086 kb on - strand, within PGA1_c03880at 375.086 kb on - strand, within PGA1_c03880at 375.086 kb on - strand, within PGA1_c03880at 375.086 kb on - strand, within PGA1_c03880at 375.088 kb on + strand, within PGA1_c03880at 375.096 kb on - strand, within PGA1_c03880at 375.137 kb on + strand, within PGA1_c03880at 375.137 kb on + strand, within PGA1_c03880at 375.137 kb on + strand, within PGA1_c03880at 375.137 kb on + strand, within PGA1_c03880at 375.137 kb on + strand, within PGA1_c03880at 375.145 kb on - strand, within PGA1_c03880at 375.178 kb on + strand, within PGA1_c03880at 375.178 kb on + strand, within PGA1_c03880at 375.178 kb on + strand, within PGA1_c03880at 375.186 kb on - strand, within PGA1_c03880at 375.186 kb on - strand, within PGA1_c03880at 375.199 kb on - strand, within PGA1_c03880at 375.203 kb on + strand, within PGA1_c03880at 375.235 kb on - strand, within PGA1_c03880at 375.257 kb on - strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.327 kb on + strand, within PGA1_c03880at 375.342 kb on + strand, within PGA1_c03880at 375.355 kb on + strandat 375.362 kb on + strandat 375.365 kb on + strandat 375.365 kb on + strandat 375.365 kb on - strandat 375.367 kb on + strandat 375.370 kb on - strandat 375.370 kb on - strandat 375.373 kb on - strandat 375.375 kb on - strandat 375.375 kb on - strandat 375.375 kb on - strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.400 kb on - strandat 375.400 kb on - strandat 375.400 kb on - strandat 375.402 kb on + strandat 375.442 kb on + strandat 375.449 kb on - strandat 375.498 kb on - strandat 375.499 kb on + strandat 375.499 kb on + strandat 375.512 kb on - strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.547 kb on - strandat 375.587 kb on - strand, within PGA1_c03890at 375.587 kb on - strand, within PGA1_c03890at 375.587 kb on - strand, within PGA1_c03890at 375.589 kb on + strand, within PGA1_c03890at 375.606 kb on + strand, within PGA1_c03890at 375.647 kb on - strand, within PGA1_c03890at 375.648 kb on + strand, within PGA1_c03890at 375.665 kb on - strand, within PGA1_c03890at 375.737 kb on - strand, within PGA1_c03890at 375.737 kb on - strand, within PGA1_c03890at 375.767 kb on - strand, within PGA1_c03890at 375.769 kb on + strand, within PGA1_c03890at 375.777 kb on - strand, within PGA1_c03890at 375.777 kb on - strand, within PGA1_c03890at 375.828 kb on + strand, within PGA1_c03890at 375.844 kb on - strand, within PGA1_c03890at 375.862 kb on + strand, within PGA1_c03890at 375.865 kb on - strand, within PGA1_c03890at 375.865 kb on - strand, within PGA1_c03890at 375.872 kb on + strand, within PGA1_c03890at 375.874 kb on + strand, within PGA1_c03890at 375.922 kb on - strand, within PGA1_c03890at 375.957 kb on + strand, within PGA1_c03890at 375.957 kb on + strand, within PGA1_c03890at 375.993 kb on + strand, within PGA1_c03890at 376.002 kb on + strand, within PGA1_c03890at 376.026 kb on + strand, within PGA1_c03890at 376.045 kb on - strand, within PGA1_c03890at 376.057 kb on + strand, within PGA1_c03890at 376.078 kb on + strand, within PGA1_c03890at 376.086 kb on - strandat 376.123 kb on + strandat 376.123 kb on + strandat 376.174 kb on - strandat 376.180 kb on + strandat 376.183 kb on - strandat 376.188 kb on - strandat 376.188 kb on - strandat 376.188 kb on - strandat 376.368 kb on - strandat 376.441 kb on + strand, within PGA1_c03900at 376.444 kb on + strand, within PGA1_c03900at 376.452 kb on - strand, within PGA1_c03900at 376.526 kb on - strand, within PGA1_c03900at 376.532 kb on - strand, within PGA1_c03900at 376.606 kb on + strand, within PGA1_c03900at 376.618 kb on + strand, within PGA1_c03900at 376.654 kb on + strand, within PGA1_c03900at 376.654 kb on - strand, within PGA1_c03900at 376.703 kb on + strand, within PGA1_c03900at 376.703 kb on + strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.730 kb on - strand, within PGA1_c03900at 377.040 kb on + strand, within PGA1_c03900at 377.122 kb on + strand, within PGA1_c03900at 377.123 kb on + strand, within PGA1_c03900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 3 mM
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374,514 + +1.0
374,531 + -1.0
374,531 + -0.5
374,539 - -2.0
374,539 - +1.5
374,539 - -2.2
374,585 - +0.4
374,595 - +0.5
374,595 - +1.7
374,609 + +0.6
374,617 - -0.9
374,643 + -0.1
374,664 + +0.4
374,691 + +1.1
374,719 - +1.8
374,731 - +0.2
374,746 + +1.6
374,747 + +0.7
374,752 + -0.2
374,759 + +0.5
374,759 + +0.2
374,759 + +0.4
374,789 - PGA1_c03880 0.13 -0.1
374,825 - PGA1_c03880 0.18 +1.4
374,868 + PGA1_c03880 0.24 -0.2
374,868 + PGA1_c03880 0.24 +0.2
374,868 + PGA1_c03880 0.24 -0.3
374,868 + PGA1_c03880 0.24 +1.5
374,868 + PGA1_c03880 0.24 -0.7
374,868 + PGA1_c03880 0.24 -2.1
374,868 + PGA1_c03880 0.24 +0.6
374,868 + PGA1_c03880 0.24 +1.5
374,868 + PGA1_c03880 0.24 +0.9
374,868 + PGA1_c03880 0.24 -0.4
374,868 + PGA1_c03880 0.24 +0.9
374,868 + PGA1_c03880 0.24 -0.2
374,868 + PGA1_c03880 0.24 +0.5
374,868 + PGA1_c03880 0.24 +0.8
374,868 + PGA1_c03880 0.24 +0.3
374,868 + PGA1_c03880 0.24 +0.9
374,868 + PGA1_c03880 0.24 +0.9
374,868 + PGA1_c03880 0.24 -0.0
374,868 + PGA1_c03880 0.24 +0.4
374,868 + PGA1_c03880 0.24 +0.2
374,868 + PGA1_c03880 0.24 -0.8
374,868 + PGA1_c03880 0.24 +0.1
374,868 + PGA1_c03880 0.24 -0.3
374,868 + PGA1_c03880 0.24 -0.7
374,868 + PGA1_c03880 0.24 +0.9
374,870 + PGA1_c03880 0.24 +0.5
374,870 + PGA1_c03880 0.24 +0.5
374,870 + PGA1_c03880 0.24 +0.2
374,873 + PGA1_c03880 0.25 -0.1
374,873 + PGA1_c03880 0.25 -1.6
374,873 + PGA1_c03880 0.25 +1.1
374,876 - PGA1_c03880 0.25 +0.1
374,876 - PGA1_c03880 0.25 +0.7
374,876 - PGA1_c03880 0.25 -0.7
374,876 - PGA1_c03880 0.25 +1.0
374,876 - PGA1_c03880 0.25 +0.9
374,876 - PGA1_c03880 0.25 +0.8
374,876 - PGA1_c03880 0.25 +0.1
374,876 - PGA1_c03880 0.25 -0.4
374,876 - PGA1_c03880 0.25 +0.8
374,876 - PGA1_c03880 0.25 +0.6
374,876 - PGA1_c03880 0.25 +1.1
374,876 - PGA1_c03880 0.25 -0.5
374,876 - PGA1_c03880 0.25 -0.0
374,878 - PGA1_c03880 0.25 +0.4
374,881 - PGA1_c03880 0.26 -0.3
374,881 - PGA1_c03880 0.26 +0.9
374,881 - PGA1_c03880 0.26 +1.4
374,883 - PGA1_c03880 0.26 -0.4
374,896 + PGA1_c03880 0.28 +0.9
374,984 - PGA1_c03880 0.40 +0.5
374,984 - PGA1_c03880 0.40 -0.7
375,038 + PGA1_c03880 0.48 +0.7
375,041 - PGA1_c03880 0.48 +1.0
375,041 - PGA1_c03880 0.48 +0.3
375,046 - PGA1_c03880 0.49 +0.2
375,046 - PGA1_c03880 0.49 +0.2
375,071 - PGA1_c03880 0.52 +1.5
375,078 + PGA1_c03880 0.53 +0.5
375,078 + PGA1_c03880 0.53 -0.8
375,078 + PGA1_c03880 0.53 -1.6
375,078 + PGA1_c03880 0.53 +0.4
375,078 + PGA1_c03880 0.53 +1.7
375,085 + PGA1_c03880 0.54 +1.0
375,086 - PGA1_c03880 0.54 +0.9
375,086 - PGA1_c03880 0.54 +0.3
375,086 - PGA1_c03880 0.54 +0.0
375,086 - PGA1_c03880 0.54 +0.3
375,086 - PGA1_c03880 0.54 +0.9
375,086 - PGA1_c03880 0.54 +0.4
375,088 + PGA1_c03880 0.55 +0.7
375,096 - PGA1_c03880 0.56 +1.9
375,137 + PGA1_c03880 0.61 +0.6
375,137 + PGA1_c03880 0.61 +0.7
375,137 + PGA1_c03880 0.61 +0.2
375,137 + PGA1_c03880 0.61 +1.4
375,137 + PGA1_c03880 0.61 +0.6
375,145 - PGA1_c03880 0.62 +0.9
375,178 + PGA1_c03880 0.67 +0.1
375,178 + PGA1_c03880 0.67 +0.0
375,178 + PGA1_c03880 0.67 +0.0
375,186 - PGA1_c03880 0.68 +1.4
375,186 - PGA1_c03880 0.68 -0.1
375,199 - PGA1_c03880 0.70 -0.0
375,203 + PGA1_c03880 0.71 +0.6
375,235 - PGA1_c03880 0.75 +0.7
375,257 - PGA1_c03880 0.78 -1.6
375,265 + PGA1_c03880 0.79 +0.5
375,265 + PGA1_c03880 0.79 -0.2
375,265 + PGA1_c03880 0.79 -0.5
375,265 + PGA1_c03880 0.79 +0.8
375,265 + PGA1_c03880 0.79 -0.1
375,273 - PGA1_c03880 0.80 -0.4
375,273 - PGA1_c03880 0.80 -0.1
375,273 - PGA1_c03880 0.80 +1.1
375,273 - PGA1_c03880 0.80 +0.7
375,273 - PGA1_c03880 0.80 +0.0
375,273 - PGA1_c03880 0.80 +0.1
375,327 + PGA1_c03880 0.88 +0.8
375,342 + PGA1_c03880 0.90 +0.3
375,355 + +1.2
375,362 + +0.7
375,365 + +1.4
375,365 + -0.3
375,365 - +1.1
375,367 + +0.4
375,370 - +0.6
375,370 - +1.7
375,373 - -0.2
375,375 - -0.4
375,375 - -0.4
375,375 - +0.1
375,392 + +0.5
375,392 + -0.0
375,392 + +1.6
375,392 + +0.4
375,392 + -0.0
375,392 + +1.4
375,392 + +0.0
375,392 + -1.4
375,392 + +0.3
375,392 + -0.6
375,400 - +1.6
375,400 - +0.5
375,400 - +0.4
375,402 + -0.2
375,442 + -1.3
375,449 - +1.9
375,498 - +0.2
375,499 + +1.1
375,499 + +0.1
375,512 - -0.8
375,534 + -0.1
375,534 + +1.0
375,534 + -0.3
375,542 - +0.6
375,542 - -0.1
375,542 - -1.4
375,542 - -0.3
375,542 - -1.3
375,547 - -0.2
375,587 - PGA1_c03890 0.12 -0.6
375,587 - PGA1_c03890 0.12 -0.6
375,587 - PGA1_c03890 0.12 +2.0
375,589 + PGA1_c03890 0.12 -0.9
375,606 + PGA1_c03890 0.15 +0.0
375,647 - PGA1_c03890 0.21 -0.5
375,648 + PGA1_c03890 0.22 -0.6
375,665 - PGA1_c03890 0.24 -2.2
375,737 - PGA1_c03890 0.36 -2.5
375,737 - PGA1_c03890 0.36 +0.3
375,767 - PGA1_c03890 0.40 +1.0
375,769 + PGA1_c03890 0.40 +0.2
375,777 - PGA1_c03890 0.42 -0.2
375,777 - PGA1_c03890 0.42 -2.1
375,828 + PGA1_c03890 0.50 -0.7
375,844 - PGA1_c03890 0.52 -0.6
375,862 + PGA1_c03890 0.55 -0.4
375,865 - PGA1_c03890 0.55 -0.2
375,865 - PGA1_c03890 0.55 +0.9
375,872 + PGA1_c03890 0.57 -0.1
375,874 + PGA1_c03890 0.57 -1.5
375,922 - PGA1_c03890 0.64 -1.6
375,957 + PGA1_c03890 0.70 +1.1
375,957 + PGA1_c03890 0.70 -0.6
375,993 + PGA1_c03890 0.75 +0.2
376,002 + PGA1_c03890 0.77 +0.2
376,026 + PGA1_c03890 0.81 +1.5
376,045 - PGA1_c03890 0.83 -0.5
376,057 + PGA1_c03890 0.85 +0.3
376,078 + PGA1_c03890 0.89 -0.1
376,086 - -0.3
376,123 + +1.7
376,123 + -1.6
376,174 - +0.1
376,180 + +0.8
376,183 - +0.2
376,188 - +0.6
376,188 - +0.0
376,188 - +0.6
376,368 - +0.1
376,441 + PGA1_c03900 0.12 +0.4
376,444 + PGA1_c03900 0.12 -1.7
376,452 - PGA1_c03900 0.13 -1.4
376,526 - PGA1_c03900 0.17 +1.7
376,532 - PGA1_c03900 0.18 -0.7
376,606 + PGA1_c03900 0.23 +0.6
376,618 + PGA1_c03900 0.23 -1.9
376,654 + PGA1_c03900 0.26 -1.0
376,654 - PGA1_c03900 0.26 -2.9
376,703 + PGA1_c03900 0.29 -1.7
376,703 + PGA1_c03900 0.29 -0.6
376,711 - PGA1_c03900 0.29 -0.4
376,711 - PGA1_c03900 0.29 -0.6
376,711 - PGA1_c03900 0.29 +1.8
376,711 - PGA1_c03900 0.29 -3.3
376,730 - PGA1_c03900 0.31 -2.6
377,040 + PGA1_c03900 0.51 +1.2
377,122 + PGA1_c03900 0.56 -1.4
377,123 + PGA1_c03900 0.56 +0.4

Or see this region's nucleotide sequence