Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c30310

Experiment: m.b. Choline Lysine 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Choline Lysine 3 mM
3,167,978	+		PGA1_c30290	0.29	-0.7
3,167,986	-		PGA1_c30290	0.30	-0.4
3,167,986	-		PGA1_c30290	0.30	+0.4
3,168,009	+		PGA1_c30290	0.34	-0.0
3,168,009	+		PGA1_c30290	0.34	-2.4
3,168,017	-		PGA1_c30290	0.36	-1.6
3,168,017	-		PGA1_c30290	0.36	-0.4
3,168,028	+		PGA1_c30290	0.38	-1.3
3,168,028	+		PGA1_c30290	0.38	-2.0
3,168,028	+		PGA1_c30290	0.38	-2.5
3,168,028	+		PGA1_c30290	0.38	+1.6
3,168,028	+		PGA1_c30290	0.38	-1.3
3,168,036	-		PGA1_c30290	0.39	-0.9
3,168,036	-		PGA1_c30290	0.39	-0.1
3,168,169	-		PGA1_c30290	0.61	-3.4
3,168,309	-		PGA1_c30290	0.84	-0.1
3,168,396	+				-0.7
3,168,423	+				-0.8
3,168,423	+				-1.4
3,168,423	+				-0.1
3,168,423	+				+0.4
3,168,423	+				-0.6
3,168,423	+				-0.0
3,168,423	+				+0.9
3,168,423	+				-0.2
3,168,431	-				-0.8
3,168,431	-				-0.4
3,168,431	-				-1.2
3,168,431	-				+0.7
3,168,443	+				+0.3
3,168,446	-				-0.4
3,168,446	-				+0.2
3,168,464	+				-0.7
3,168,464	+				-0.0
3,168,477	-				-2.7
3,168,477	-				-0.1
3,168,524	-				-0.4
3,168,727	+				-0.2
3,168,727	+				-1.0
3,168,773	-				+0.3
3,168,781	+				+0.3
3,168,783	-				-0.4
3,168,783	-				-1.4
3,168,790	-				-0.7
3,168,873	+				+0.6
3,169,060	-		PGA1_c30310	0.18	+0.1
3,169,083	+		PGA1_c30310	0.21	+0.5
3,169,084	+		PGA1_c30310	0.21	-1.4
3,169,089	-		PGA1_c30310	0.22	-1.4
3,169,091	-		PGA1_c30310	0.22	-2.9
3,169,123	+		PGA1_c30310	0.26	+2.2
3,169,131	-		PGA1_c30310	0.27	-1.7
3,169,847	+				+0.2
3,169,847	+				-0.4
3,169,851	-				-0.3
3,169,855	-				+1.5
3,169,855	-				+3.2
3,169,855	-				-0.6
3,169,888	+				-0.3
3,169,917	-		PGA1_c30320	0.12	+0.1
3,169,964	+		PGA1_c30320	0.19	-0.3
3,169,965	-		PGA1_c30320	0.19	+0.2
3,170,020	-		PGA1_c30320	0.27	-0.5
3,170,037	-		PGA1_c30320	0.30	-1.6
3,170,120	-		PGA1_c30320	0.42	-1.1
3,170,120	-		PGA1_c30320	0.42	-1.3
3,170,124	-		PGA1_c30320	0.43	-0.3
3,170,162	+		PGA1_c30320	0.48	+1.4
3,170,182	-		PGA1_c30320	0.51	-1.3
3,170,204	+		PGA1_c30320	0.55	-2.0
3,170,204	+		PGA1_c30320	0.55	+0.1
3,170,204	+		PGA1_c30320	0.55	+0.5
3,170,204	+		PGA1_c30320	0.55	+0.1
3,170,204	+		PGA1_c30320	0.55	-0.6
3,170,212	-		PGA1_c30320	0.56	+0.2
3,170,212	-		PGA1_c30320	0.56	-0.3
3,170,212	-		PGA1_c30320	0.56	+0.2
3,170,212	-		PGA1_c30320	0.56	+1.6
3,170,212	-		PGA1_c30320	0.56	+0.5
3,170,212	-		PGA1_c30320	0.56	+0.8
3,170,212	-		PGA1_c30320	0.56	+0.2
3,170,212	-		PGA1_c30320	0.56	-1.2
3,170,212	-		PGA1_c30320	0.56	-1.2
3,170,212	-		PGA1_c30320	0.56	-0.1
3,170,212	-		PGA1_c30320	0.56	-1.7
3,170,212	-		PGA1_c30320	0.56	-0.5
3,170,212	-		PGA1_c30320	0.56	-0.3
3,170,231	-		PGA1_c30320	0.59	+0.5
3,170,249	+		PGA1_c30320	0.61	-1.0
3,170,267	-		PGA1_c30320	0.64	-0.3
3,170,323	-		PGA1_c30320	0.73	+0.9
3,170,340	+		PGA1_c30320	0.75	+1.6
3,170,348	-		PGA1_c30320	0.76	-1.4
3,170,353	-		PGA1_c30320	0.77	+0.4
3,170,366	-		PGA1_c30320	0.79	-0.0
3,170,394	+		PGA1_c30320	0.83	+0.7
3,170,402	-		PGA1_c30320	0.84	-0.8
3,170,404	+		PGA1_c30320	0.85	+0.2
3,170,535	-				+0.6
3,170,550	+				-0.2
3,170,559	-				+0.7
3,170,641	+				-0.1
3,170,641	+				+0.5
3,170,689	+				+0.4
3,170,689	+				-0.1
3,170,697	-				+1.1