Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22320

Experiment: m.b. Choline Lysine 3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Choline Lysine 3 mM
2,314,459	+		PGA1_c22290	0.69	-0.5
2,314,469	+		PGA1_c22290	0.71	-1.4
2,314,482	-		PGA1_c22290	0.72	-1.2
2,314,501	+		PGA1_c22290	0.75	+0.0
2,314,501	+		PGA1_c22290	0.75	+0.2
2,314,509	-		PGA1_c22290	0.76	-1.8
2,314,509	-		PGA1_c22290	0.76	-0.2
2,314,546	-		PGA1_c22290	0.81	+1.0
2,314,609	+				+0.0
2,314,632	+				+1.4
2,314,635	-				-0.7
2,314,695	+				+0.4
2,314,701	+				+1.1
2,314,731	-		PGA1_c22300	0.15	-0.0
2,314,767	+		PGA1_c22300	0.26	+0.1
2,314,767	+		PGA1_c22300	0.26	+0.2
2,314,795	-		PGA1_c22300	0.34	+0.3
2,314,810	-		PGA1_c22300	0.38	-0.9
2,314,958	+		PGA1_c22300	0.82	+0.2
2,314,958	+		PGA1_c22300	0.82	+0.3
2,314,958	+		PGA1_c22300	0.82	-0.0
2,314,958	+		PGA1_c22300	0.82	+0.7
2,314,958	+		PGA1_c22300	0.82	+1.6
2,314,958	+		PGA1_c22300	0.82	-0.1
2,314,958	+		PGA1_c22300	0.82	+0.1
2,314,966	-		PGA1_c22300	0.85	+0.3
2,314,966	-		PGA1_c22300	0.85	-0.4
2,314,966	-		PGA1_c22300	0.85	+0.8
2,314,966	-		PGA1_c22300	0.85	+0.5
2,314,966	-		PGA1_c22300	0.85	-0.8
2,314,966	-		PGA1_c22300	0.85	+0.6
2,314,991	+				-1.0
2,315,070	+		PGA1_c22310	0.10	-0.0
2,315,070	+		PGA1_c22310	0.10	-0.0
2,315,078	-		PGA1_c22310	0.12	+0.5
2,315,089	+		PGA1_c22310	0.15	+1.6
2,315,089	+		PGA1_c22310	0.15	-0.3
2,315,096	-		PGA1_c22310	0.16	+0.3
2,315,096	-		PGA1_c22310	0.16	+0.5
2,315,097	-		PGA1_c22310	0.17	-0.7
2,315,186	+		PGA1_c22310	0.38	-3.5
2,315,225	-		PGA1_c22310	0.47	+0.6
2,315,261	-		PGA1_c22310	0.55	-0.8
2,315,409	+				-0.1
2,315,416	-				-0.8
2,315,416	-				-0.1
2,315,461	+				-0.9
2,315,495	+				-1.0
2,315,507	+				-0.4
2,315,527	+				+0.3
2,315,527	+				-1.0
2,315,640	+		PGA1_c22320	0.22	+0.7
2,315,653	-		PGA1_c22320	0.23	-0.9
2,315,653	-		PGA1_c22320	0.23	-0.0
2,315,655	+		PGA1_c22320	0.23	-0.7
2,315,740	+		PGA1_c22320	0.33	-2.8
2,315,792	+		PGA1_c22320	0.39	+0.7
2,315,792	+		PGA1_c22320	0.39	-0.4
2,315,800	-		PGA1_c22320	0.40	+0.2
2,315,800	-		PGA1_c22320	0.40	-0.8
2,315,800	-		PGA1_c22320	0.40	+0.6
2,315,800	-		PGA1_c22320	0.40	-0.5
2,315,867	+		PGA1_c22320	0.47	+0.8
2,315,963	+		PGA1_c22320	0.58	-1.3
2,315,997	+		PGA1_c22320	0.62	+0.4
2,315,997	+		PGA1_c22320	0.62	-0.8
2,315,997	+		PGA1_c22320	0.62	-1.9
2,315,997	+		PGA1_c22320	0.62	-0.6
2,316,039	+		PGA1_c22320	0.67	-0.5
2,316,039	+		PGA1_c22320	0.67	+0.1
2,316,039	-		PGA1_c22320	0.67	-1.6
2,316,046	+		PGA1_c22320	0.67	-1.0
2,316,046	+		PGA1_c22320	0.67	-0.9
2,316,047	-		PGA1_c22320	0.68	-1.5
2,316,049	-		PGA1_c22320	0.68	-0.1
2,316,127	-		PGA1_c22320	0.77	-0.6
2,316,127	-		PGA1_c22320	0.77	-0.0
2,316,211	-		PGA1_c22320	0.86	-1.1
2,316,266	+				-0.0
2,316,421	-				+0.6
2,316,447	+				+0.7
2,316,527	-				-2.2
2,316,546	+				-0.3
2,316,548	-				-1.3
2,316,573	-				-0.9
2,316,677	+				+1.6
2,316,681	-				+1.2
2,316,685	-				-1.2
2,316,695	-				-0.3
2,316,715	+				-1.0
2,316,723	-				-1.3
2,316,728	+				+0.3
2,316,736	-				-0.6
2,316,778	-				-0.0
2,316,801	-		PGA1_c22330	0.10	-0.5
2,316,846	-		PGA1_c22330	0.11	-0.7
2,316,850	+		PGA1_c22330	0.11	+0.1
2,316,858	-		PGA1_c22330	0.12	-0.2
2,317,052	-		PGA1_c22330	0.16	-0.0
2,317,097	-		PGA1_c22330	0.17	-0.1
2,317,122	-		PGA1_c22330	0.17	-0.0
2,317,132	+		PGA1_c22330	0.18	+0.3
2,317,140	+		PGA1_c22330	0.18	+0.2
2,317,151	+		PGA1_c22330	0.18	-1.2
2,317,176	+		PGA1_c22330	0.19	-0.2
2,317,199	-		PGA1_c22330	0.19	-0.3
2,317,212	+		PGA1_c22330	0.19	-0.0
2,317,249	+		PGA1_c22330	0.20	-0.0
2,317,310	+		PGA1_c22330	0.21	-0.1
2,317,310	+		PGA1_c22330	0.21	+0.0